Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0007723

Physical Location & Seq

Genomic Coordinates Reverse (-)

10056286 .. 10062819

Gene Structure 6534 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G070100.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGAGTCACAAAGGATTGATATATAGCTTTGTTGCAAAAGGAGGTGTTGTTTTAGCTGAACACACGTCGTTCTCCGGAAACTTCAGTACCATTGCTGTTCAATGCTTACAGAAGTTACCTTCTAGTAGCAGCAAGTACACATATGCGTGTGATAGCCACACCTTCAACTTCCTACTTGACAATGGATTTGTGTTTCTTGTTGTTGCGGATGAATCGGTTGGGAGGAGTATGCCTTTTGTGTTCCTTGAACGGGTGAAAGAAGATTTCAAGCAGCGTTATGGTTCAAATAATAAGATTGAAGGCCCACATCCTCTTGCTGATGATAATGAAGACGATGACTTATTTGAAGATCGATTTAGTATTGCATACAATCTTGACAGAGAATTTGGACCAAGGCTTAAGGAGCACATGCAATATTGCATGGAGCACCCAGAAGAAATAAGTAAGCTTTCCAAATTGAAGGCCCAAATCACGGAGGTCAAAGGTGTGATGATGGACAATATTGAGAAGCAATTAGATGGATTTCAAAAACAATTGACAGCCAGCCCCATATTGGCTATTTTGGTTTTGGATCGTGGGGAGAAAATTGAACTTTTGGTGGACAAAACAGAAAACCTGCAGTTCCAGGCTGACAGCTTCCAGAGGCAAGGAAGGCAACTGCGACGTAAGATGTGGCTGCAAAGTCTCCAAATGAAACTAATGATTGGAGGAGGAATCCTTATCCTGATCATCATACTATGGCTAATTGCCTGCGGAGGTTTCAAATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006887 GO:0006906 GO:0006996 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0033036 GO:0033263 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0046907 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098796 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin MMtag Synaptobrevin

Protein Analysis

257

Amino Acids

29.16

Weight (kDa)

6.1

Isoelectric Point (pI)

53.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54300 AT3G54300 AT3G54300
fragaria_vesca	FvH4_7g05140
malus_domestica	MD02G1261900.v1.1 MD07G1058500.v1.1
prunus_persica	Prupe.2G070100_v2.0.a1 Prupe.2G070100_v2.0.a1 Prupe.2G070100_v2.0.a1 Prupe.2G070100_v2.0.a1
pyrus_communis	pycom02g22390 pycom07g04470
rosa_chinensis	RchiOBHm_Chr1g0331711
rosa_laevigata	RLG00000029720
rosa_multiflora	Rmu_sc0005044.1_g000001 Rmu_sc0034229.1_g000001
rosa_roxburghii	Rroxscaffold_4G00318860
rosa_rugosa	Rorug01G0095900 Rorug01G0095900
rosa_samantha	Rh1AG119500 Rh1BG091100 Rh1CG114600 Rh1DG125000
rosa_wichuraiana	Rw1G009660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	624
AccIII	TCCGGA	1 cut(s)	74
AciI	CCGC	2 cut(s)	206, 753
AclWI	GGATC	1 cut(s)	579
AcsI	RAATTY	1 cut(s)	383
AcuI	CTGAAG	1 cut(s)	67
AfaI	GTAC	2 cut(s)	88, 137
AfiI	CCNNNNNNNGG	3 cut(s)	250, 472, 553
AflII	CTTAAG	1 cut(s)	398
AflIII	ACRYGT	1 cut(s)	63
AjiI	CACGTC	1 cut(s)	66
AjnI	CCWGG	1 cut(s)	624
AluBI	AGCT	4 cut(s)	27, 56, 448, 636
AluI	AGCT	4 cut(s)	27, 56, 448, 636
Alw21I	GWGCWC	2 cut(s)	408, 429
Alw26I	GTCTC	1 cut(s)	689
AlwI	GGATC	1 cut(s)	579
Aor13HI	TCCGGA	1 cut(s)	74
AoxI	GGCC	2 cut(s)	301, 462
ApeKI	GCWGC	3 cut(s)	129, 271, 676
ApoI	RAATTY	1 cut(s)	383
ArsI	GACNNNNNNTTYG	4 cut(s)	170, 202, 368, 400
AspS9I	GGNCC	3 cut(s)	302, 389, 463
AsuHPI	GGTGA	1 cut(s)	265
AvaII	GGWCC	1 cut(s)	389
BaeI	ACNNNNGTAYC	2 cut(s)	70, 103
BbsI	GAAGAC	1 cut(s)	336
Bbv12I	GWGCWC	2 cut(s)	408, 429
BbvI	GCAGC	3 cut(s)	141, 283, 663
BccI	CCATC	2 cut(s)	487, 512
BciT130I	CCWGG	1 cut(s)	626
BclI	TGATCA	1 cut(s)	726
BcoDI	GTCTC	1 cut(s)	689
BfaI	CTAG	1 cut(s)	123
BfmI	CTRYAG	1 cut(s)	617
BfrI	CTTAAG	1 cut(s)	398
BfuAI	ACCTGC	1 cut(s)	624
BisI	GCNGC	3 cut(s)	130, 272, 677
BlsI	GCNGC	3 cut(s)	131, 273, 678
Bme1390I	CCNGG	1 cut(s)	626
Bme18I	GGWCC	1 cut(s)	389
BmgBI	CACGTC	1 cut(s)	66
BmgT120I	GGNCC	3 cut(s)	302, 389, 463
BmrFI	CCNGG	1 cut(s)	626
BpiI	GAAGAC	1 cut(s)	336
Bsa29I	ATCGAT	1 cut(s)	352
BsaJI	CCNNGG	1 cut(s)	392
BsaWI	WCCGGW	1 cut(s)	74
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bsc4I	CCNNNNNNNGG	3 cut(s)	250, 472, 553
Bse3DI	GCAATG	1 cut(s)	90
BseAI	TCCGGA	1 cut(s)	74
BseBI	CCWGG	1 cut(s)	626
BseCI	ATCGAT	1 cut(s)	352
BseDI	CCNNGG	1 cut(s)	392
BseGI	GGATG	2 cut(s)	214, 307
BseLI	CCNNNNNNNGG	3 cut(s)	250, 472, 553
BseMI	GCAATG	1 cut(s)	90
BseRI	GAGGAG	2 cut(s)	238, 723
BseXI	GCAGC	3 cut(s)	141, 283, 663
BshFI	GGCC	2 cut(s)	303, 464
BshVI	ATCGAT	1 cut(s)	352
BsiHKAI	GWGCWC	2 cut(s)	408, 429
BsiSI	CCGG	1 cut(s)	75
BslI	CCNNNNNNNGG	3 cut(s)	250, 472, 553
BsmAI	GTCTC	1 cut(s)	689
BsnI	GGCC	2 cut(s)	303, 464
Bsp1286I	GDGCHC	2 cut(s)	408, 429
Bsp13I	TCCGGA	1 cut(s)	74
Bsp143I	GATC	3 cut(s)	349, 571, 726
BspACI	CCGC	2 cut(s)	206, 753
BspANI	GGCC	2 cut(s)	303, 464
BspDI	ATCGAT	1 cut(s)	352
BspEI	TCCGGA	1 cut(s)	74
BspMAI	CTGCAG	1 cut(s)	621
BspMI	ACCTGC	1 cut(s)	624
BspPI	GGATC	1 cut(s)	579
BspTI	CTTAAG	1 cut(s)	398
BsrDI	GCAATG	1 cut(s)	90
BssECI	CCNNGG	1 cut(s)	392
BssMI	GATC	3 cut(s)	349, 571, 726
BssT1I	CCWWGG	1 cut(s)	392
Bst2UI	CCWGG	1 cut(s)	626
BstAFI	CTTAAG	1 cut(s)	398
BstC8I	GCNNGC	2 cut(s)	544, 751
BstF5I	GGATG	2 cut(s)	214, 307
BstKTI	GATC	3 cut(s)	352, 574, 729
BstMAI	GTCTC	1 cut(s)	689
BstMBI	GATC	3 cut(s)	349, 571, 726
BstMWI	GCNNNNNNNGC	2 cut(s)	403, 652
BstNI	CCWGG	1 cut(s)	626
BstNSI	RCATGY	1 cut(s)	412
BstSCI	CCNGG	1 cut(s)	624
BstSFI	CTRYAG	1 cut(s)	617
BstV1I	GCAGC	3 cut(s)	141, 283, 663
BstV2I	GAAGAC	1 cut(s)	336
Bsu15I	ATCGAT	1 cut(s)	352
BsuRI	GGCC	2 cut(s)	303, 464
BsuTUI	ATCGAT	1 cut(s)	352
BtrI	CACGTC	1 cut(s)	66
BtsCI	GGATG	2 cut(s)	214, 307
BveI	ACCTGC	1 cut(s)	624
Cac8I	GCNNGC	2 cut(s)	544, 751
Cfr13I	GGNCC	3 cut(s)	302, 389, 463
ClaI	ATCGAT	1 cut(s)	352
Csp6I	GTAC	2 cut(s)	87, 136
CviAII	CATG	2 cut(s)	409, 421
CviQI	GTAC	2 cut(s)	87, 136
DpnI	GATC	3 cut(s)	351, 573, 728
DpnII	GATC	3 cut(s)	349, 571, 726
Eco130I	CCWWGG	1 cut(s)	392
Eco47I	GGWCC	1 cut(s)	389
Eco57I	CTGAAG	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	624
EcoT14I	CCWWGG	1 cut(s)	392
ErhI	CCWWGG	1 cut(s)	392
FaeI	CATG	2 cut(s)	412, 424
FatI	CATG	2 cut(s)	408, 420
FauNDI	CATATG	1 cut(s)	142
FbaI	TGATCA	1 cut(s)	726
Fnu4HI	GCNGC	3 cut(s)	130, 272, 677
FokI	GGATG	2 cut(s)	221, 294
Fsp4HI	GCNGC	3 cut(s)	130, 272, 677
FspBI	CTAG	1 cut(s)	123
GluI	GCNGC	3 cut(s)	130, 272, 677
HaeIII	GGCC	2 cut(s)	303, 464
HapII	CCGG	1 cut(s)	75
Hin1II	CATG	2 cut(s)	412, 424
HindIII	AAGCTT	1 cut(s)	446
HinfI	GANTC	3 cut(s)	4, 212, 714
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	1 cut(s)	265
Hpy166II	GTNNAC	2 cut(s)	138, 601
Hpy188III	TCNNGA	4 cut(s)	75, 374, 640, 724
Hpy8I	GTNNAC	2 cut(s)	138, 601
Hpy99I	CGWCG	2 cut(s)	70, 666
HpyAV	CCTTC	5 cut(s)	129, 172, 293, 454, 645
HpyCH4IV	ACGT	2 cut(s)	65, 664
HpyCH4V	TGCA	6 cut(s)	35, 365, 412, 420, 619, 679
HpyF10VI	GCNNNNNNNGC	2 cut(s)	403, 652
HpySE526I	ACGT	2 cut(s)	65, 664
Hsp92II	CATG	2 cut(s)	412, 424
Kpn2I	TCCGGA	1 cut(s)	74
Ksp22I	TGATCA	1 cut(s)	726
Kzo9I	GATC	3 cut(s)	349, 571, 726
LmnI	GCTCC	2 cut(s)	403, 424
LpnPI	CCDG	9 cut(s)	88, 444, 556, 611, 629, 638, 653, 737, 763
Lsp1109I	GCAGC	3 cut(s)	141, 283, 663
MaeI	CTAG	1 cut(s)	123
MaeII	ACGT	2 cut(s)	65, 664
MaeIII	GTNAC	2 cut(s)	5, 114
MalI	GATC	3 cut(s)	351, 573, 728
MboI	GATC	3 cut(s)	349, 571, 726
MboII	GAAGA	4 cut(s)	272, 341, 359, 446
MfeI	CAATTG	1 cut(s)	533
MhlI	GDGCHC	2 cut(s)	408, 429
MluCI	AATT	6 cut(s)	383, 455, 512, 533, 585, 744
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	8 cut(s)	35, 216, 321, 469, 636, 701, 704, 749
MroI	TCCGGA	1 cut(s)	74
MseI	TTAA	2 cut(s)	399, 769
MslI	CAYNNNNRTG	1 cut(s)	145
MspCI	CTTAAG	1 cut(s)	398
MspI	CCGG	1 cut(s)	75
MspR9I	CCNGG	1 cut(s)	626
MunI	CAATTG	1 cut(s)	533
MvaI	CCWGG	1 cut(s)	626
MwoI	GCNNNNNNNGC	2 cut(s)	403, 652
NdeI	CATATG	1 cut(s)	142
NdeII	GATC	3 cut(s)	349, 571, 726
NlaIII	CATG	2 cut(s)	412, 424
NmuCI	GTSAC	1 cut(s)	5
NspI	RCATGY	1 cut(s)	412
PfeI	GAWTC	2 cut(s)	212, 714
PkrI	GCNGC	3 cut(s)	131, 273, 678
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	624
PspGI	CCWGG	1 cut(s)	624
PspPI	GGNCC	3 cut(s)	302, 389, 463
PstI	CTGCAG	1 cut(s)	621
RsaI	GTAC	2 cut(s)	88, 137
RsaNI	GTAC	2 cut(s)	87, 136
RseI	CAYNNNNRTG	1 cut(s)	145
SaqAI	TTAA	2 cut(s)	399, 769
SatI	GCNGC	3 cut(s)	130, 272, 677
Sau3AI	GATC	3 cut(s)	349, 571, 726
Sau96I	GGNCC	3 cut(s)	302, 389, 463
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	626
SduI	GDGCHC	2 cut(s)	408, 429
SfcI	CTRYAG	1 cut(s)	617
SinI	GGWCC	1 cut(s)	389
SmiMI	CAYNNNNRTG	1 cut(s)	145
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	6 cut(s)	383, 455, 512, 533, 585, 744
SsiI	CCGC	2 cut(s)	206, 753
SspI	AATATT	2 cut(s)	416, 502
SspMI	CTAG	1 cut(s)	123
StyD4I	CCNGG	1 cut(s)	624
StyI	CCWWGG	1 cut(s)	392
TaiI	ACGT	2 cut(s)	68, 667
TaqI	TCGA	1 cut(s)	352
TasI	AATT	6 cut(s)	383, 455, 512, 533, 585, 744
TatI	WGTACW	1 cut(s)	135
TfiI	GAWTC	2 cut(s)	212, 714
Tru1I	TTAA	2 cut(s)	399, 769
Tru9I	TTAA	2 cut(s)	399, 769
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	3 cut(s)	129, 271, 676
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	3 cut(s)	225, 342, 707
TspGWI	ACGGA	1 cut(s)	488
Vha464I	CTTAAG	1 cut(s)	398
VpaK11BI	GGWCC	1 cut(s)	389
XapI	RAATTY	1 cut(s)	383
XceI	RCATGY	1 cut(s)	412
XcmI	CCANNNNNNNNNTGG	1 cut(s)	550
XspI	CTAG	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.