Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034229.1

Orthogroup ID

OG0007723

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2833

Gene Structure 2833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034229.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ctaaaagacctggaccacgtcgccttcagttcagagacccagaacccagagcatagcataacataccaagattccaaatcttgcagacgacgcaaaccttctcttactaattctcgctctcctgaaagttggtcactgatactccgattgcgttttgatctgagaagttccggaggtgtcgtcttagcagagcacacctctttctctggaaactttagcaccattgctgttcaatgcttacagaagctaccttccagtagcagcaagtacacgtactcgtgtgatggctacacatttaacttcctccttgacaatggatttgtttttcttgttgttgcggatgaatcggttgggaggagtgtgccttttgttttccttgaacgagtaaaagctgattttatgcagcgttatggtgcaagtattaaaaatgaaggtccacatccgcttgcagatgaagatgaagatgatgacttatttgaagaccgatttagcattgcttataatctggacagagaatttgggccaaagcttaaggagcacatgcaatactgcatggagcacccagaggaaataagtaaactttccaaactaaaggctcaaatcacggacgtcaaaggcattatgatggacaatattgagaaggtgaaagataacatactctcagctctagcacaattataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006887 GO:0006906 GO:0006996 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0033036 GO:0033263 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0046907 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098796 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

226

Amino Acids

25.69

Weight (kDa)

5.42

Isoelectric Point (pI)

46.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54300 AT3G54300 AT3G54300
fragaria_vesca	FvH4_7g05140
malus_domestica	MD02G1261900.v1.1 MD07G1058500.v1.1
prunus_persica	Prupe.2G070100_v2.0.a1 Prupe.2G070100_v2.0.a1 Prupe.2G070100_v2.0.a1 Prupe.2G070100_v2.0.a1
pyrus_communis	pycom02g22390 pycom07g04470
rosa_chinensis	RchiOBHm_Chr1g0331711
rosa_laevigata	RLG00000029720
rosa_multiflora	Rmu_sc0005044.1_g000001 Rmu_sc0034229.1_g000001
rosa_roxburghii	Rroxscaffold_4G00318860
rosa_rugosa	Rorug01G0095900 Rorug01G0095900
rosa_samantha	Rh1AG119500 Rh1BG091100 Rh1CG114600 Rh1DG125000
rosa_wichuraiana	Rw1G009660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	501, 679
AatII	GACGTC	1 cut(s)	612
AccIII	TCCGGA	1 cut(s)	170
AciI	CCGC	2 cut(s)	338, 443
AcsI	RAATTY	1 cut(s)	515
AcuI	CTGAAG	1 cut(s)	10
AcyI	GRCGYC	1 cut(s)	609
AfaI	GTAC	2 cut(s)	269, 275
AflII	CTTAAG	1 cut(s)	530
AflIII	ACRYGT	1 cut(s)	270
AgsI	TTSAA	3 cut(s)	233, 380, 479
AjiI	CACGTC	1 cut(s)	19
AjnI	CCWGG	1 cut(s)	9
AluBI	AGCT	4 cut(s)	247, 392, 529, 665
AluI	AGCT	4 cut(s)	247, 392, 529, 665
Alw21I	GWGCWC	3 cut(s)	195, 540, 561
Alw26I	GTCTC	1 cut(s)	29
Aor13HI	TCCGGA	1 cut(s)	170
AoxI	GGCC	1 cut(s)	521
ApeKI	GCWGC	2 cut(s)	261, 403
ApoI	RAATTY	1 cut(s)	515
ArsI	GACNNNNNNTTYG	4 cut(s)	302, 334, 500, 532
AspS9I	GGNCC	3 cut(s)	13, 434, 521
AsuHPI	GGTGA	1 cut(s)	655
AvaII	GGWCC	2 cut(s)	13, 434
BauI	CACGAG	1 cut(s)	277
BbsI	GAAGAC	1 cut(s)	486
Bbv12I	GWGCWC	3 cut(s)	195, 540, 561
BbvI	GCAGC	2 cut(s)	273, 415
BccI	CCATC	2 cut(s)	278, 619
BciT130I	CCWGG	1 cut(s)	11
BcoDI	GTCTC	1 cut(s)	29
BfaI	CTAG	1 cut(s)	668
BfrI	CTTAAG	1 cut(s)	530
BisI	GCNGC	2 cut(s)	262, 404
BlsI	GCNGC	2 cut(s)	263, 405
Bme1390I	CCNGG	1 cut(s)	11
Bme18I	GGWCC	2 cut(s)	13, 434
BmgBI	CACGTC	1 cut(s)	19
BmgT120I	GGNCC	3 cut(s)	13, 434, 521
BmrFI	CCNGG	1 cut(s)	11
BpiI	GAAGAC	1 cut(s)	486
BplI	GAGNNNNNCTC	2 cut(s)	182, 214
BsaAI	YACGTR	1 cut(s)	273
BsaHI	GRCGYC	1 cut(s)	609
BsaI	GGTCTC	1 cut(s)	29
BsaWI	WCCGGW	1 cut(s)	170
BsaXI	ACNNNNNCTCC	4 cut(s)	126, 156, 165, 195
Bse1I	ACTGG	1 cut(s)	255
Bse3DI	GCAATG	2 cut(s)	222, 492
BseAI	TCCGGA	1 cut(s)	170
BseBI	CCWGG	1 cut(s)	11
BseGI	GGATG	2 cut(s)	346, 439
BseMI	GCAATG	2 cut(s)	222, 492
BseMII	CTCAG	2 cut(s)	152, 675
BseNI	ACTGG	1 cut(s)	255
BseRI	GAGGAG	1 cut(s)	370
BseXI	GCAGC	2 cut(s)	273, 415
BshFI	GGCC	1 cut(s)	523
BsiHKAI	GWGCWC	3 cut(s)	195, 540, 561
BsiSI	CCGG	1 cut(s)	171
BsmAI	GTCTC	1 cut(s)	29
BsnI	GGCC	1 cut(s)	523
Bso31I	GGTCTC	1 cut(s)	29
Bsp1286I	GDGCHC	3 cut(s)	195, 540, 561
Bsp13I	TCCGGA	1 cut(s)	170
Bsp143I	GATC	1 cut(s)	157
BspACI	CCGC	2 cut(s)	338, 443
BspANI	GGCC	1 cut(s)	523
BspCNI	CTCAG	2 cut(s)	153, 674
BspEI	TCCGGA	1 cut(s)	170
BspTI	CTTAAG	1 cut(s)	530
BspTNI	GGTCTC	1 cut(s)	29
BsrDI	GCAATG	2 cut(s)	222, 492
BsrI	ACTGG	1 cut(s)	255
BssMI	GATC	1 cut(s)	157
BssNI	GRCGYC	1 cut(s)	609
BssSI	CACGAG	1 cut(s)	277
Bst2BI	CACGAG	1 cut(s)	277
Bst2UI	CCWGG	1 cut(s)	11
BstACI	GRCGYC	1 cut(s)	609
BstAFI	CTTAAG	1 cut(s)	530
BstBAI	YACGTR	1 cut(s)	273
BstC8I	GCNNGC	1 cut(s)	447
BstDEI	CTNAG	3 cut(s)	161, 184, 661
BstF5I	GGATG	2 cut(s)	346, 439
BstKTI	GATC	1 cut(s)	160
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	1 cut(s)	157
BstMWI	GCNNNNNNNGC	2 cut(s)	90, 535
BstNI	CCWGG	1 cut(s)	11
BstNSI	RCATGY	1 cut(s)	544
BstSCI	CCNGG	1 cut(s)	9
BstV1I	GCAGC	2 cut(s)	273, 415
BstV2I	GAAGAC	1 cut(s)	486
BsuRI	GGCC	1 cut(s)	523
BtrI	CACGTC	1 cut(s)	19
BtsCI	GGATG	2 cut(s)	346, 439
BtsIMutI	CAGTG	1 cut(s)	134
Cac8I	GCNNGC	1 cut(s)	447
Cfr13I	GGNCC	3 cut(s)	13, 434, 521
CseI	GACGC	1 cut(s)	99
Csp6I	GTAC	2 cut(s)	268, 274
CviAII	CATG	2 cut(s)	541, 553
CviJI	RGCY	7 cut(s)	247, 288, 392, 523, 529, 596, 665
CviKI_1	RGCY	7 cut(s)	247, 288, 392, 523, 529, 596, 665
CviQI	GTAC	2 cut(s)	268, 274
DdeI	CTNAG	3 cut(s)	161, 184, 661
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
Eco31I	GGTCTC	1 cut(s)	29
Eco47I	GGWCC	2 cut(s)	13, 434
Eco57I	CTGAAG	1 cut(s)	10
EcoRII	CCWGG	1 cut(s)	9
FaeI	CATG	2 cut(s)	544, 556
FatI	CATG	2 cut(s)	540, 552
Fnu4HI	GCNGC	2 cut(s)	262, 404
FokI	GGATG	2 cut(s)	353, 426
Fsp4HI	GCNGC	2 cut(s)	262, 404
FspBI	CTAG	1 cut(s)	668
GluI	GCNGC	2 cut(s)	262, 404
HaeIII	GGCC	1 cut(s)	523
HapII	CCGG	1 cut(s)	171
HgaI	GACGC	1 cut(s)	99
Hin1I	GRCGYC	1 cut(s)	609
Hin1II	CATG	2 cut(s)	544, 556
HindIII	AAGCTT	1 cut(s)	527
HinfI	GANTC	2 cut(s)	71, 344
HpaII	CCGG	1 cut(s)	171
HphI	GGTGA	1 cut(s)	655
Hpy166II	GTNNAC	3 cut(s)	270, 437, 578
Hpy188I	TCNGA	3 cut(s)	34, 146, 162
Hpy188III	TCNNGA	4 cut(s)	122, 171, 207, 506
Hpy8I	GTNNAC	3 cut(s)	270, 437, 578
Hpy99I	CGWCG	2 cut(s)	23, 93
HpyAV	CCTTC	5 cut(s)	34, 108, 261, 425, 634
HpyCH4IV	ACGT	3 cut(s)	18, 272, 609
HpyCH4V	TGCA	6 cut(s)	84, 403, 416, 449, 544, 552
HpyF10VI	GCNNNNNNNGC	2 cut(s)	90, 535
HpyF3I	CTNAG	3 cut(s)	161, 184, 661
HpySE526I	ACGT	3 cut(s)	18, 272, 609
Hsp92I	GRCGYC	1 cut(s)	609
Hsp92II	CATG	2 cut(s)	544, 556
Kpn2I	TCCGGA	1 cut(s)	170
Kzo9I	GATC	1 cut(s)	157
LmnI	GCTCC	2 cut(s)	535, 556
LpnPI	CCDG	9 cut(s)	23, 53, 60, 135, 184, 192, 268, 491, 576
Lsp1109I	GCAGC	2 cut(s)	273, 415
MaeI	CTAG	1 cut(s)	668
MaeII	ACGT	3 cut(s)	18, 272, 609
MaeIII	GTNAC	1 cut(s)	132
MalI	GATC	1 cut(s)	159
MboI	GATC	1 cut(s)	157
MboII	GAAGA	3 cut(s)	467, 473, 491
MhlI	GDGCHC	3 cut(s)	195, 540, 561
MluCI	AATT	3 cut(s)	109, 515, 674
MnlI	CCTC	5 cut(s)	167, 208, 314, 348, 559
MroI	TCCGGA	1 cut(s)	170
MseI	TTAA	3 cut(s)	297, 423, 531
MslI	CAYNNNNRTG	1 cut(s)	623
MspCI	CTTAAG	1 cut(s)	530
MspI	CCGG	1 cut(s)	171
MspR9I	CCNGG	1 cut(s)	11
MvaI	CCWGG	1 cut(s)	11
MwoI	GCNNNNNNNGC	2 cut(s)	90, 535
NdeII	GATC	1 cut(s)	157
NlaIII	CATG	2 cut(s)	544, 556
NmuCI	GTSAC	1 cut(s)	132
NspI	RCATGY	1 cut(s)	544
PfeI	GAWTC	2 cut(s)	71, 344
PflFI	GACNNNGTC	1 cut(s)	17
PkrI	GCNGC	2 cut(s)	263, 405
Ppu21I	YACGTR	1 cut(s)	273
PsiI	TTATAA	2 cut(s)	501, 679
Psp6I	CCWGG	1 cut(s)	9
PspGI	CCWGG	1 cut(s)	9
PspPI	GGNCC	3 cut(s)	13, 434, 521
PsyI	GACNNNGTC	1 cut(s)	17
RsaI	GTAC	2 cut(s)	269, 275
RsaNI	GTAC	2 cut(s)	268, 274
RseI	CAYNNNNRTG	1 cut(s)	623
SaqAI	TTAA	3 cut(s)	297, 423, 531
SatI	GCNGC	2 cut(s)	262, 404
Sau3AI	GATC	1 cut(s)	157
Sau96I	GGNCC	3 cut(s)	13, 434, 521
ScrFI	CCNGG	1 cut(s)	11
SduI	GDGCHC	3 cut(s)	195, 540, 561
SinI	GGWCC	2 cut(s)	13, 434
SmiMI	CAYNNNNRTG	1 cut(s)	623
SmlI	CTYRAG	1 cut(s)	530
SmoI	CTYRAG	1 cut(s)	530
Sse9I	AATT	3 cut(s)	109, 515, 674
SsiI	CCGC	2 cut(s)	338, 443
SspI	AATATT	1 cut(s)	634
SspMI	CTAG	1 cut(s)	668
StyD4I	CCNGG	1 cut(s)	9
TaiI	ACGT	3 cut(s)	21, 275, 612
TaqII	GACCGA	1 cut(s)	498
TasI	AATT	3 cut(s)	109, 515, 674
TatI	WGTACW	1 cut(s)	267
TfiI	GAWTC	2 cut(s)	71, 344
Tru1I	TTAA	3 cut(s)	297, 423, 531
Tru9I	TTAA	3 cut(s)	297, 423, 531
TscAI	CASTG	1 cut(s)	141
TseFI	GTSAC	1 cut(s)	132
TseI	GCWGC	2 cut(s)	261, 403
Tsp45I	GTSAC	1 cut(s)	132
TspDTI	ATGAA	4 cut(s)	357, 444, 468, 474
TspGWI	ACGGA	1 cut(s)	620
TspRI	CASTG	1 cut(s)	141
Tth111I	GACNNNGTC	1 cut(s)	17
Vha464I	CTTAAG	1 cut(s)	530
VpaK11BI	GGWCC	2 cut(s)	13, 434
XapI	RAATTY	1 cut(s)	515
XceI	RCATGY	1 cut(s)	544
XspI	CTAG	1 cut(s)	668
ZraI	GACGTC	1 cut(s)	610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.