Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0007723

Physical Location & Seq

Genomic Coordinates Forward (+)

20547438 .. 20550481

Gene Structure 3044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG119500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAGTCATAAAGGATTGATATATAGCTTTGTTGCCAAAGGAGGTGTCGTCTTAGCAGAGCACACCTCTTTCTCTGGAAACTTTAGCACCATTGCTGTTCAATGCTTACAGAAGCTACCTTCCAGTAGCAGCAAGTACACGTACTCGTGTGACGGCTACACATTTAACTTCCTCCTTGACAATGGATTTGTTTTTCTTGTTGTTGCGGATGAATCGGTTGGGAGGAGTGTGCCTTTTGTTTTCCTTGAACGAGTAAAAGCTGATTTTATGCAGCGTTATGGTGCAAGTATTAAAAATGAAGGTCCACATCCGCTTGCAGATGAAGATGAAGATGATGACTTATTTGAAGACCGATTTAGCATTGCTTATAATCTGGACAGAGAATTTGGGCCAAAGCTTAAGGAGCACATGCAATACTGCATGGAGCACCCAGAGGAAATAAGTAAACTTTCCAAACTAAAGGCTCAAATCACAGACGTCAAAGGCATTATGATGGACAATATTGAGAAGGTGAAAGATAACATACTCTCAGCTCTAGCACAATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006887 GO:0006906 GO:0006996 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0033036 GO:0033263 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0046907 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098796 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

182

Amino Acids

20.5

Weight (kDa)

5.09

Isoelectric Point (pI)

30.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Longin	PF13774	32 - 103	2e-20	Regulated-SNARE-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54300 AT3G54300 AT3G54300
fragaria_vesca	FvH4_7g05140
malus_domestica	MD02G1261900.v1.1 MD07G1058500.v1.1
prunus_persica	Prupe.2G070100_v2.0.a1 Prupe.2G070100_v2.0.a1 Prupe.2G070100_v2.0.a1 Prupe.2G070100_v2.0.a1
pyrus_communis	pycom02g22390 pycom07g04470
rosa_chinensis	RchiOBHm_Chr1g0331711
rosa_laevigata	RLG00000029720
rosa_multiflora	Rmu_sc0005044.1_g000001 Rmu_sc0034229.1_g000001
rosa_roxburghii	Rroxscaffold_4G00318860
rosa_rugosa	Rorug01G0095900 Rorug01G0095900
rosa_samantha	Rh1AG119500 Rh1BG091100 Rh1CG114600 Rh1DG125000
rosa_wichuraiana	Rw1G009660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	369, 547
AatII	GACGTC	1 cut(s)	480
AciI	CCGC	2 cut(s)	206, 311
AcsI	RAATTY	1 cut(s)	383
AcyI	GRCGYC	1 cut(s)	477
AfaI	GTAC	2 cut(s)	137, 143
AflII	CTTAAG	1 cut(s)	398
AflIII	ACRYGT	1 cut(s)	138
AgsI	TTSAA	3 cut(s)	101, 248, 347
AluBI	AGCT	5 cut(s)	27, 115, 260, 397, 533
AluI	AGCT	5 cut(s)	27, 115, 260, 397, 533
Alw21I	GWGCWC	3 cut(s)	63, 408, 429
AoxI	GGCC	1 cut(s)	389
ApeKI	GCWGC	2 cut(s)	129, 271
ApoI	RAATTY	1 cut(s)	383
ArsI	GACNNNNNNTTYG	6 cut(s)	30, 62, 170, 202, 368, 400
AspS9I	GGNCC	2 cut(s)	302, 389
AsuHPI	GGTGA	1 cut(s)	523
AvaII	GGWCC	1 cut(s)	302
BauI	CACGAG	1 cut(s)	145
BbsI	GAAGAC	1 cut(s)	354
Bbv12I	GWGCWC	3 cut(s)	63, 408, 429
BbvI	GCAGC	2 cut(s)	141, 283
BccI	CCATC	1 cut(s)	487
BceAI	ACGGC	1 cut(s)	169
BfaI	CTAG	1 cut(s)	536
BfrI	CTTAAG	1 cut(s)	398
BisI	GCNGC	2 cut(s)	130, 272
BlsI	GCNGC	2 cut(s)	131, 273
Bme18I	GGWCC	1 cut(s)	302
BmgT120I	GGNCC	2 cut(s)	302, 389
BpiI	GAAGAC	1 cut(s)	354
BplI	GAGNNNNNCTC	2 cut(s)	50, 82
BsaAI	YACGTR	1 cut(s)	141
BsaHI	GRCGYC	1 cut(s)	477
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bse1I	ACTGG	1 cut(s)	123
Bse3DI	GCAATG	2 cut(s)	90, 360
BseGI	GGATG	2 cut(s)	214, 307
BseMI	GCAATG	2 cut(s)	90, 360
BseMII	CTCAG	1 cut(s)	543
BseNI	ACTGG	1 cut(s)	123
BseRI	GAGGAG	1 cut(s)	238
BseXI	GCAGC	2 cut(s)	141, 283
BshFI	GGCC	1 cut(s)	391
BsiHKAI	GWGCWC	3 cut(s)	63, 408, 429
BsnI	GGCC	1 cut(s)	391
Bsp1286I	GDGCHC	3 cut(s)	63, 408, 429
BspACI	CCGC	2 cut(s)	206, 311
BspANI	GGCC	1 cut(s)	391
BspCNI	CTCAG	1 cut(s)	542
BspTI	CTTAAG	1 cut(s)	398
BsrDI	GCAATG	2 cut(s)	90, 360
BsrI	ACTGG	1 cut(s)	123
BssNI	GRCGYC	1 cut(s)	477
BssSI	CACGAG	1 cut(s)	145
Bst2BI	CACGAG	1 cut(s)	145
BstACI	GRCGYC	1 cut(s)	477
BstAFI	CTTAAG	1 cut(s)	398
BstBAI	YACGTR	1 cut(s)	141
BstC8I	GCNNGC	1 cut(s)	315
BstDEI	CTNAG	2 cut(s)	52, 529
BstF5I	GGATG	2 cut(s)	214, 307
BstMWI	GCNNNNNNNGC	1 cut(s)	403
BstNSI	RCATGY	1 cut(s)	412
BstV1I	GCAGC	2 cut(s)	141, 283
BstV2I	GAAGAC	1 cut(s)	354
BsuRI	GGCC	1 cut(s)	391
BtsCI	GGATG	2 cut(s)	214, 307
Cac8I	GCNNGC	1 cut(s)	315
Cfr13I	GGNCC	2 cut(s)	302, 389
Csp6I	GTAC	2 cut(s)	136, 142
CviAII	CATG	2 cut(s)	409, 421
CviJI	RGCY	8 cut(s)	27, 115, 156, 260, 391, 397, 464, 533
CviKI_1	RGCY	8 cut(s)	27, 115, 156, 260, 391, 397, 464, 533
CviQI	GTAC	2 cut(s)	136, 142
DdeI	CTNAG	2 cut(s)	52, 529
Eco47I	GGWCC	1 cut(s)	302
FaeI	CATG	2 cut(s)	412, 424
FatI	CATG	2 cut(s)	408, 420
Fnu4HI	GCNGC	2 cut(s)	130, 272
FokI	GGATG	2 cut(s)	221, 294
Fsp4HI	GCNGC	2 cut(s)	130, 272
FspBI	CTAG	1 cut(s)	536
GluI	GCNGC	2 cut(s)	130, 272
HaeIII	GGCC	1 cut(s)	391
Hin1I	GRCGYC	1 cut(s)	477
Hin1II	CATG	2 cut(s)	412, 424
HindIII	AAGCTT	1 cut(s)	395
HinfI	GANTC	2 cut(s)	4, 212
HphI	GGTGA	1 cut(s)	523
Hpy166II	GTNNAC	3 cut(s)	138, 305, 446
Hpy188III	TCNNGA	2 cut(s)	75, 374
Hpy8I	GTNNAC	3 cut(s)	138, 305, 446
HpyAV	CCTTC	3 cut(s)	129, 293, 502
HpyCH4IV	ACGT	2 cut(s)	140, 477
HpyCH4V	TGCA	5 cut(s)	271, 284, 317, 412, 420
HpyF10VI	GCNNNNNNNGC	1 cut(s)	403
HpyF3I	CTNAG	2 cut(s)	52, 529
HpySE526I	ACGT	2 cut(s)	140, 477
Hsp92I	GRCGYC	1 cut(s)	477
Hsp92II	CATG	2 cut(s)	412, 424
LmnI	GCTCC	2 cut(s)	403, 424
LpnPI	CCDG	4 cut(s)	60, 136, 359, 444
Lsp1109I	GCAGC	2 cut(s)	141, 283
MaeI	CTAG	1 cut(s)	536
MaeII	ACGT	2 cut(s)	140, 477
MaeIII	GTNAC	1 cut(s)	149
MboII	GAAGA	3 cut(s)	335, 341, 359
MhlI	GDGCHC	3 cut(s)	63, 408, 429
MluCI	AATT	2 cut(s)	383, 542
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	5 cut(s)	35, 76, 182, 216, 427
MseI	TTAA	3 cut(s)	165, 291, 399
MslI	CAYNNNNRTG	1 cut(s)	491
MspCI	CTTAAG	1 cut(s)	398
MwoI	GCNNNNNNNGC	1 cut(s)	403
NlaIII	CATG	2 cut(s)	412, 424
NmuCI	GTSAC	1 cut(s)	149
NspI	RCATGY	1 cut(s)	412
PfeI	GAWTC	1 cut(s)	212
PkrI	GCNGC	2 cut(s)	131, 273
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Ppu21I	YACGTR	1 cut(s)	141
PsiI	TTATAA	2 cut(s)	369, 547
PspPI	GGNCC	2 cut(s)	302, 389
RsaI	GTAC	2 cut(s)	137, 143
RsaNI	GTAC	2 cut(s)	136, 142
RseI	CAYNNNNRTG	1 cut(s)	491
SaqAI	TTAA	3 cut(s)	165, 291, 399
SatI	GCNGC	2 cut(s)	130, 272
Sau96I	GGNCC	2 cut(s)	302, 389
SchI	GAGTC	1 cut(s)	13
SduI	GDGCHC	3 cut(s)	63, 408, 429
SinI	GGWCC	1 cut(s)	302
SmiMI	CAYNNNNRTG	1 cut(s)	491
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	2 cut(s)	383, 542
SsiI	CCGC	2 cut(s)	206, 311
SspI	AATATT	1 cut(s)	502
SspMI	CTAG	1 cut(s)	536
TaiI	ACGT	2 cut(s)	143, 480
TaqII	GACCGA	1 cut(s)	366
TasI	AATT	2 cut(s)	383, 542
TatI	WGTACW	1 cut(s)	135
TfiI	GAWTC	1 cut(s)	212
Tru1I	TTAA	3 cut(s)	165, 291, 399
Tru9I	TTAA	3 cut(s)	165, 291, 399
TseFI	GTSAC	1 cut(s)	149
TseI	GCWGC	2 cut(s)	129, 271
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	4 cut(s)	225, 312, 336, 342
Vha464I	CTTAAG	1 cut(s)	398
VpaK11BI	GGWCC	1 cut(s)	302
XapI	RAATTY	1 cut(s)	383
XceI	RCATGY	1 cut(s)	412
XspI	CTAG	1 cut(s)	536
ZraI	GACGTC	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.