Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0007723

Physical Location & Seq

Genomic Coordinates Reverse (-)

47543785 .. 47546545

Gene Structure 2761 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029720

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGCCATGGGTCGACGAAGCAAACCTCCTCTCACTAATTCTCGCTCTCCTGAAAGTTGGTCACTGATACTCCGATTGCGTCTTGATCTGAGAAGTTCCGGTTGTATTTCTTTTGCGGGTCTTCACGCATTTGAAGCCATAAAGCTACCTTCCAGTAGCAGCAAGTACACTTACTCGTGTGATGGCTACACATTTAACTTTCTCCTTGACAATGGATTTGTTTTTCTTGTTGTTGCGGATGAATCGGTTGGGAGGAGTGTGCCTTTTGTTTTCCTTGAACGAGTAAAAGCTGATTTTATGCAGCGTTATGGTGCAAGTATTAAAAATGAAGGTCCACATCCACTTGCAGATGAAGATGAAGATGACGACTTATTTGAAGACCGATTTAGCATTGCATATAATCTGGACAGAGAATTTGGGCCAAAGCTTAAGGAGCACATGCAATACTGCATGGAGCACCCAGAGGAAATAAGTAAACTTTCCAAACTAAAGGCTCAAATCACGGACGTCAAAGGCATTATGATGGACAATATTGAGAAGGTTTTGGATCGTGGGGAGAAAATTGAACTTCTCGTGGACAAATCTGAAAATCTGCAGTTCCAGGCTGACAGCTTCCAGAGGCAAGGAAGGCAATTGCGACGCAAGATGTGGCTGCAGAGTCTCCAAATGAAGCTAATGATAGGAGGAGGAATCTTTGCTCTGATCGTCATACTATGGCTTATTGCCTGTGGAGGTTTCAAATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006887 GO:0006906 GO:0006996 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0033036 GO:0033263 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0046907 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098796 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

249

Amino Acids

28.35

Weight (kDa)

6.45

Isoelectric Point (pI)

51.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Longin	PF13774	48 - 113	5.7e-18	Regulated-SNARE-like domain
Synaptobrevin	PF00957	159 - 239	2.1e-28	Synaptobrevin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54300 AT3G54300 AT3G54300
fragaria_vesca	FvH4_7g05140
malus_domestica	MD02G1261900.v1.1 MD07G1058500.v1.1
prunus_persica	Prupe.2G070100_v2.0.a1 Prupe.2G070100_v2.0.a1 Prupe.2G070100_v2.0.a1 Prupe.2G070100_v2.0.a1
pyrus_communis	pycom02g22390 pycom07g04470
rosa_chinensis	RchiOBHm_Chr1g0331711
rosa_laevigata	RLG00000029720
rosa_multiflora	Rmu_sc0005044.1_g000001 Rmu_sc0034229.1_g000001
rosa_roxburghii	Rroxscaffold_4G00318860
rosa_rugosa	Rorug01G0095900 Rorug01G0095900
rosa_samantha	Rh1AG119500 Rh1BG091100 Rh1CG114600 Rh1DG125000
rosa_wichuraiana	Rw1G009660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	510
AccI	GTMKAC	1 cut(s)	13
AciI	CCGC	2 cut(s)	116, 236
AclWI	GGATC	1 cut(s)	555
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	413
AcyI	GRCGYC	1 cut(s)	507
AfaI	GTAC	1 cut(s)	167
AflII	CTTAAG	1 cut(s)	428
AgsI	TTSAA	5 cut(s)	134, 278, 377, 566, 739
AjnI	CCWGG	1 cut(s)	600
AluBI	AGCT	5 cut(s)	145, 290, 427, 612, 673
AluI	AGCT	5 cut(s)	145, 290, 427, 612, 673
Alw21I	GWGCWC	2 cut(s)	438, 459
Alw26I	GTCTC	1 cut(s)	665
AlwI	GGATC	1 cut(s)	555
AoxI	GGCC	2 cut(s)	3, 419
ApeKI	GCWGC	3 cut(s)	159, 301, 652
ApoI	RAATTY	1 cut(s)	413
ArsI	GACNNNNNNTTYG	6 cut(s)	200, 232, 356, 388, 398, 430
AspS9I	GGNCC	2 cut(s)	332, 419
AvaII	GGWCC	1 cut(s)	332
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	2 cut(s)	175, 572
BbsI	GAAGAC	2 cut(s)	113, 384
Bbv12I	GWGCWC	2 cut(s)	438, 459
BbvI	GCAGC	3 cut(s)	171, 313, 639
BccI	CCATC	2 cut(s)	176, 517
BciT130I	CCWGG	1 cut(s)	602
BcoDI	GTCTC	1 cut(s)	665
BfmI	CTRYAG	2 cut(s)	593, 653
BfrI	CTTAAG	1 cut(s)	428
BisI	GCNGC	3 cut(s)	160, 302, 653
BlsI	GCNGC	3 cut(s)	161, 303, 654
Bme1390I	CCNGG	1 cut(s)	602
Bme18I	GGWCC	1 cut(s)	332
BmgT120I	GGNCC	2 cut(s)	332, 419
BmrFI	CCNGG	1 cut(s)	602
BpiI	GAAGAC	2 cut(s)	113, 384
BsaHI	GRCGYC	1 cut(s)	507
BsaJI	CCNNGG	1 cut(s)	6
BsaWI	WCCGGW	1 cut(s)	98
BsaXI	ACNNNNNCTCC	2 cut(s)	54, 84
Bse1I	ACTGG	1 cut(s)	153
Bse3DI	GCAATG	1 cut(s)	390
BseBI	CCWGG	1 cut(s)	602
BseDI	CCNNGG	1 cut(s)	6
BseGI	GGATG	2 cut(s)	244, 337
BseMI	GCAATG	1 cut(s)	390
BseMII	CTCAG	1 cut(s)	80
BseNI	ACTGG	1 cut(s)	153
BseRI	GAGGAG	3 cut(s)	18, 268, 699
BseXI	GCAGC	3 cut(s)	171, 313, 639
BshFI	GGCC	2 cut(s)	5, 421
BsiHKAI	GWGCWC	2 cut(s)	438, 459
BsiSI	CCGG	1 cut(s)	99
BsmAI	GTCTC	1 cut(s)	665
BsnI	GGCC	2 cut(s)	5, 421
Bsp1286I	GDGCHC	2 cut(s)	438, 459
Bsp143I	GATC	3 cut(s)	85, 547, 702
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	2 cut(s)	116, 236
BspANI	GGCC	2 cut(s)	5, 421
BspCNI	CTCAG	1 cut(s)	81
BspMAI	CTGCAG	2 cut(s)	597, 657
BspPI	GGATC	1 cut(s)	555
BspTI	CTTAAG	1 cut(s)	428
BsrDI	GCAATG	1 cut(s)	390
BsrI	ACTGG	1 cut(s)	153
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	3 cut(s)	85, 547, 702
BssNI	GRCGYC	1 cut(s)	507
BssSI	CACGAG	2 cut(s)	175, 572
BssT1I	CCWWGG	1 cut(s)	6
Bst2BI	CACGAG	2 cut(s)	175, 572
Bst2UI	CCWGG	1 cut(s)	602
BstACI	GRCGYC	1 cut(s)	507
BstAFI	CTTAAG	1 cut(s)	428
BstDEI	CTNAG	1 cut(s)	89
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	2 cut(s)	244, 337
BstKTI	GATC	3 cut(s)	88, 550, 705
BstMAI	GTCTC	1 cut(s)	665
BstMBI	GATC	3 cut(s)	85, 547, 702
BstMWI	GCNNNNNNNGC	3 cut(s)	134, 433, 628
BstNI	CCWGG	1 cut(s)	602
BstNSI	RCATGY	1 cut(s)	442
BstSCI	CCNGG	1 cut(s)	600
BstSFI	CTRYAG	2 cut(s)	593, 653
BstV1I	GCAGC	3 cut(s)	171, 313, 639
BstV2I	GAAGAC	2 cut(s)	113, 384
BsuRI	GGCC	2 cut(s)	5, 421
BtgI	CCRYGG	1 cut(s)	6
BtsCI	GGATG	2 cut(s)	244, 337
BtsIMutI	CAGTG	1 cut(s)	62
Cfr13I	GGNCC	2 cut(s)	332, 419
CseI	GACGC	2 cut(s)	68, 648
Csp6I	GTAC	1 cut(s)	166
CviAII	CATG	3 cut(s)	7, 439, 451
CviQI	GTAC	1 cut(s)	166
DdeI	CTNAG	1 cut(s)	89
DpnI	GATC	3 cut(s)	87, 549, 704
DpnII	GATC	3 cut(s)	85, 547, 702
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	6
Eco47I	GGWCC	1 cut(s)	332
EcoRII	CCWGG	1 cut(s)	600
EcoT14I	CCWWGG	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	3 cut(s)	10, 442, 454
FatI	CATG	3 cut(s)	6, 438, 450
FauI	CCCGC	1 cut(s)	109
FblI	GTMKAC	1 cut(s)	13
Fnu4HI	GCNGC	3 cut(s)	160, 302, 653
FokI	GGATG	2 cut(s)	251, 324
Fsp4HI	GCNGC	3 cut(s)	160, 302, 653
GluI	GCNGC	3 cut(s)	160, 302, 653
HaeIII	GGCC	2 cut(s)	5, 421
HapII	CCGG	1 cut(s)	99
HgaI	GACGC	2 cut(s)	68, 648
Hin1I	GRCGYC	1 cut(s)	507
Hin1II	CATG	3 cut(s)	10, 442, 454
HincII	GTYRAC	1 cut(s)	14
HindII	GTYRAC	1 cut(s)	14
HindIII	AAGCTT	1 cut(s)	425
HinfI	GANTC	3 cut(s)	242, 658, 690
HpaII	CCGG	1 cut(s)	99
Hpy166II	GTNNAC	5 cut(s)	14, 168, 335, 476, 577
Hpy188I	TCNGA	4 cut(s)	74, 90, 586, 702
Hpy188III	TCNNGA	4 cut(s)	50, 83, 404, 616
Hpy8I	GTNNAC	5 cut(s)	14, 168, 335, 476, 577
Hpy99I	CGWCG	2 cut(s)	18, 642
HpyAV	CCTTC	4 cut(s)	159, 323, 532, 621
HpyCH4IV	ACGT	1 cut(s)	507
HpyCH4V	TGCA	8 cut(s)	301, 314, 347, 395, 442, 450, 595, 655
HpyF10VI	GCNNNNNNNGC	3 cut(s)	134, 433, 628
HpyF3I	CTNAG	1 cut(s)	89
HpySE526I	ACGT	1 cut(s)	507
Hsp92I	GRCGYC	1 cut(s)	507
Hsp92II	CATG	3 cut(s)	10, 442, 454
Kzo9I	GATC	3 cut(s)	85, 547, 702
LmnI	GCTCC	2 cut(s)	433, 454
LpnPI	CCDG	9 cut(s)	63, 112, 166, 389, 474, 587, 614, 629, 739
Lsp1109I	GCAGC	3 cut(s)	171, 313, 639
MaeII	ACGT	1 cut(s)	507
MaeIII	GTNAC	1 cut(s)	60
MalI	GATC	3 cut(s)	87, 549, 704
MboI	GATC	3 cut(s)	85, 547, 702
MboII	GAAGA	4 cut(s)	113, 365, 371, 389
MfeI	CAATTG	1 cut(s)	632
MhlI	GDGCHC	2 cut(s)	438, 459
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	37, 413, 561, 632
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	667
MnlI	CCTC	8 cut(s)	36, 39, 246, 457, 612, 677, 680, 725
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	195, 321, 429
MslI	CAYNNNNRTG	1 cut(s)	521
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	428
MspI	CCGG	1 cut(s)	99
MspR9I	CCNGG	1 cut(s)	602
MunI	CAATTG	1 cut(s)	632
MvaI	CCWGG	1 cut(s)	602
MwoI	GCNNNNNNNGC	3 cut(s)	134, 433, 628
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	3 cut(s)	85, 547, 702
NlaIII	CATG	3 cut(s)	10, 442, 454
NmuCI	GTSAC	1 cut(s)	60
NspI	RCATGY	1 cut(s)	442
PfeI	GAWTC	2 cut(s)	242, 690
PkrI	GCNGC	3 cut(s)	161, 303, 654
PleI	GAGTC	1 cut(s)	666
PpsI	GAGTC	1 cut(s)	666
Psp6I	CCWGG	1 cut(s)	600
PspGI	CCWGG	1 cut(s)	600
PspPI	GGNCC	2 cut(s)	332, 419
PstI	CTGCAG	2 cut(s)	597, 657
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
RseI	CAYNNNNRTG	1 cut(s)	521
SalI	GTCGAC	1 cut(s)	12
SaqAI	TTAA	3 cut(s)	195, 321, 429
SatI	GCNGC	3 cut(s)	160, 302, 653
Sau3AI	GATC	3 cut(s)	85, 547, 702
Sau96I	GGNCC	2 cut(s)	332, 419
SchI	GAGTC	1 cut(s)	667
ScrFI	CCNGG	1 cut(s)	602
SduI	GDGCHC	2 cut(s)	438, 459
SfcI	CTRYAG	2 cut(s)	593, 653
SinI	GGWCC	1 cut(s)	332
SmiMI	CAYNNNNRTG	1 cut(s)	521
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
Sse9I	AATT	4 cut(s)	37, 413, 561, 632
SsiI	CCGC	2 cut(s)	116, 236
SspI	AATATT	1 cut(s)	532
StyD4I	CCNGG	1 cut(s)	600
StyI	CCWWGG	1 cut(s)	6
TaiI	ACGT	1 cut(s)	510
TaqI	TCGA	1 cut(s)	13
TaqII	GACCGA	1 cut(s)	396
TasI	AATT	4 cut(s)	37, 413, 561, 632
TatI	WGTACW	1 cut(s)	165
TfiI	GAWTC	2 cut(s)	242, 690
Tru1I	TTAA	3 cut(s)	195, 321, 429
Tru9I	TTAA	3 cut(s)	195, 321, 429
TscAI	CASTG	1 cut(s)	69
TseFI	GTSAC	1 cut(s)	60
TseI	GCWGC	3 cut(s)	159, 301, 652
Tsp45I	GTSAC	1 cut(s)	60
TspDTI	ATGAA	5 cut(s)	255, 342, 366, 372, 683
TspGWI	ACGGA	1 cut(s)	518
TspRI	CASTG	1 cut(s)	69
Vha464I	CTTAAG	1 cut(s)	428
VpaK11BI	GGWCC	1 cut(s)	332
XapI	RAATTY	1 cut(s)	413
XceI	RCATGY	1 cut(s)	442
XmiI	GTMKAC	1 cut(s)	13
ZraI	GACGTC	1 cut(s)	508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.