Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012365

Physical Location & Seq

Genomic Coordinates Forward (+)

20246504 .. 20248152

Gene Structure 1649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G54690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGGATCTCTTCCACCGCCATCGCTAGATTTCTCATCAATCGATCACAATTCCCTCAAAAATGGCGGATCCAGCCACCAAGAGATCTCTCATGATAATCTCCTCAACCTCTTCAAATCCCAGCAAGATCTTCTCAATCACTTCTTCAAACATCTCGATCTCTCTCAAACCCTAGATTTCTCACGCATTCTCCTTTCCACCACCGGTACCGTTTTCTTCACCGGCGTCGGTAAATCCGCTTTCGTAGCTAACAAGGTTTCACAGACGCTCGTTTCCTTAAGCTTCCGTTCCTCTTTCCTCTCCCCTCTCGATGCGCTTCATGGTGACATTGGCGCTCTTTCGCCACGCGATGTTCTCGTTTTCTTCAGCAAATCTGGCGCCACCGAGGAGCTTCTCCGTCTTGTCCCTTGCGCTAGAGCTAAAGGAGCCTTTCTGGTGTCTCTTACCTCTGTTTCTGGGAATCCACTCGCTGGTGTTTGTGATATGAATGTGCATTTACCTCTTCAGAGAGAATTGTGTCCGTTTAATCTCGCTCCGGTGACTTCTACGGCGATTCAGATGGTGTTTGGTGATACCATTGCCGTTGCTCTCATGGCGGCTAGAAATCTCTCCAAGGAAGAGTATGCAGCTAATCATCCCGCCGGTAGAATCGGCAAGAGCTTAATCTTCAAGGTGAAAGATGTTATGAAAAAGCAAGAAGAGCTTCCTGTGTGTAAAGAAGGAGACTTGATAATGGATCAATTAGTGGAGCTAACCAGCAAAGGATGTGGTTGTTTGCTTGTGGTTGATGAACATTCTCGTTTGATCGGTACATTCACAGATGGAGATCTTCGTCGGACTCTCAAGGCTAGTGGAGAAGCAATATTCAAACTCAGTGTTGGAGAAATGTGCAACAGGAAGCCGAGGACAATTGGACCGGAAACAATGGCAGTTGAAGCTATGAAGAAGATGGAATCACCGCCATCGCCTGTACAGTTTCTACCAGTGGTCAATGAAGACAACACATTGATTGGAATTGTAACATTGCATGGTTTGGTTTCAGCTGGTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003938 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006183 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009163 GO:0009165 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042278 GO:0042451 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046039 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0055086 GO:0055114 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901068 GO:1901070 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

CBS SIS

Protein Analysis

350

Amino Acids

37.75

Weight (kDa)

6.55

Isoelectric Point (pI)

36.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SIS	PF01380	65 - 195	7.4e-18	SIS domain
CBS	PF00571	225 - 281	4.7e-06	CBS domain
CBS	PF00571	293 - 348	2.3e-09	CBS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54690
fragaria_vesca	FvH4_2g21300
malus_domestica	MD05G1195500.v1.1 MD10G1182800.v1.1
prunus_persica	Prupe.8G222200_v2.0.a1
pyrus_communis	pycom05g18280 pycom10g15810
rosa_chinensis	RchiOBHm_Chr6g0287891
rosa_laevigata	RLG00000012458
rosa_multiflora	Rmu_co8244583.1_g000001 Rmu_sc0003163.1_g000003
rosa_roxburghii	Rroxscaffold_7G00180860
rosa_rugosa	Rorug06G0193300
rosa_samantha	Rh6AG302400 Rh6BG308600 Rh6CG301100 Rh6CG316300 Rh6DG301000
rosa_wichuraiana	Rw6G026130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	206
AccB1I	GGYRCC	2 cut(s)	206, 377
AccB7I	CCANNNNNTGG	1 cut(s)	470
AccII	CGCG	1 cut(s)	348
AciI	CCGC	6 cut(s)	17, 66, 237, 596, 639, 959
AclWI	GGATC	4 cut(s)	13, 63, 76, 744
AcuI	CTGAAG	2 cut(s)	349, 488
AcyI	GRCGYC	2 cut(s)	225, 378
AfaI	GTAC	3 cut(s)	208, 811, 972
AfiI	CCNNNNNNNGG	1 cut(s)	470
AflII	CTTAAG	1 cut(s)	277
AgeI	ACCGGT	1 cut(s)	203
AgsI	TTSAA	5 cut(s)	115, 148, 670, 868, 935
Alw26I	GTCTC	2 cut(s)	444, 717
AlwI	GGATC	4 cut(s)	13, 63, 76, 744
ApeKI	GCWGC	1 cut(s)	626
AsiGI	ACCGGT	1 cut(s)	203
Asp700I	GAANNNNTTC	1 cut(s)	702
Asp718I	GGTACC	1 cut(s)	206
AspLEI	GCGC	4 cut(s)	316, 335, 380, 413
AspS9I	GGNCC	1 cut(s)	914
AsuHPI	GGTGA	6 cut(s)	211, 335, 550, 581, 685, 948
AvaII	GGWCC	1 cut(s)	914
BamHI	GGATCC	1 cut(s)	68
BanI	GGYRCC	2 cut(s)	206, 377
BbsI	GAAGAC	1 cut(s)	1002
BbvI	GCAGC	1 cut(s)	638
BccI	CCATC	5 cut(s)	28, 553, 815, 943, 970
BceAI	ACGGC	2 cut(s)	564, 566
BcoDI	GTCTC	2 cut(s)	444, 717
BfaI	CTAG	5 cut(s)	26, 173, 414, 600, 849
BfoI	RGCGCY	2 cut(s)	336, 381
BfrI	CTTAAG	1 cut(s)	277
BglII	AGATCT	3 cut(s)	84, 127, 826
BisI	GCNGC	2 cut(s)	597, 627
BlsI	GCNGC	2 cut(s)	598, 628
Bme18I	GGWCC	1 cut(s)	914
BmgT120I	GGNCC	1 cut(s)	914
BmiI	GGNNCC	4 cut(s)	70, 208, 379, 427
BmsI	GCATC	1 cut(s)	301
BpiI	GAAGAC	1 cut(s)	1002
BpuEI	CTTGAG	1 cut(s)	827
Bsa29I	ATCGAT	1 cut(s)	42
BsaBI	GATNNNNATC	1 cut(s)	825
BsaHI	GRCGYC	2 cut(s)	225, 378
BsaJI	CCNNGG	3 cut(s)	384, 612, 902
BsaWI	WCCGGW	3 cut(s)	203, 535, 916
BsaXI	ACNNNNNCTCC	2 cut(s)	174, 204
Bsc4I	CCNNNNNNNGG	1 cut(s)	470
Bse118I	RCCGGY	3 cut(s)	203, 221, 641
Bse1I	ACTGG	1 cut(s)	983
Bse3DI	GCAATG	2 cut(s)	576, 1022
Bse8I	GATNNNNATC	1 cut(s)	825
BseCI	ATCGAT	1 cut(s)	42
BseDI	CCNNGG	3 cut(s)	384, 612, 902
BseGI	GGATG	2 cut(s)	634, 770
BseJI	GATNNNNATC	1 cut(s)	825
BseLI	CCNNNNNNNGG	1 cut(s)	470
BseMI	GCAATG	2 cut(s)	576, 1022
BseMII	CTCAG	1 cut(s)	886
BseNI	ACTGG	1 cut(s)	983
BseRI	GAGGAG	2 cut(s)	92, 401
BseXI	GCAGC	1 cut(s)	638
BseYI	CCCAGC	1 cut(s)	120
Bsh1236I	CGCG	1 cut(s)	348
BshNI	GGYRCC	2 cut(s)	206, 377
BshTI	ACCGGT	1 cut(s)	203
BshVI	ATCGAT	1 cut(s)	42
BsiSI	CCGG	5 cut(s)	204, 222, 536, 642, 917
BslFI	GGGAC	1 cut(s)	389
BslI	CCNNNNNNNGG	1 cut(s)	470
BsmAI	GTCTC	2 cut(s)	444, 717
BsmFI	GGGAC	1 cut(s)	389
BsmI	GAATGC	1 cut(s)	186
Bsp1407I	TGTACA	1 cut(s)	970
Bsp143I	GATC	9 cut(s)	5, 43, 68, 84, 127, 157, 736, 804, 826
BspACI	CCGC	6 cut(s)	17, 66, 237, 596, 639, 959
BspCNI	CTCAG	1 cut(s)	885
BspDI	ATCGAT	1 cut(s)	42
BspFNI	CGCG	1 cut(s)	348
BspHI	TCATGA	1 cut(s)	91
BspLI	GGNNCC	4 cut(s)	70, 208, 379, 427
BspPI	GGATC	4 cut(s)	13, 63, 76, 744
BspQI	GCTCTTC	1 cut(s)	693
BspT107I	GGYRCC	2 cut(s)	206, 377
BspTI	CTTAAG	1 cut(s)	277
BsrDI	GCAATG	2 cut(s)	576, 1022
BsrFI	RCCGGY	3 cut(s)	203, 221, 641
BsrGI	TGTACA	1 cut(s)	970
BsrI	ACTGG	1 cut(s)	983
BssAI	RCCGGY	3 cut(s)	203, 221, 641
BssECI	CCNNGG	3 cut(s)	384, 612, 902
BssMI	GATC	9 cut(s)	5, 43, 68, 84, 127, 157, 736, 804, 826
BssNI	GRCGYC	2 cut(s)	225, 378
BssT1I	CCWWGG	1 cut(s)	612
Bst4CI	ACNGT	2 cut(s)	211, 975
Bst6I	CTCTTC	5 cut(s)	15, 116, 507, 612, 693
BstACI	GRCGYC	2 cut(s)	225, 378
BstAFI	CTTAAG	1 cut(s)	277
BstAUI	TGTACA	1 cut(s)	970
BstDEI	CTNAG	1 cut(s)	872
BstF5I	GGATG	2 cut(s)	634, 770
BstFNI	CGCG	1 cut(s)	348
BstH2I	RGCGCY	2 cut(s)	336, 381
BstHHI	GCGC	4 cut(s)	316, 335, 380, 413
BstKTI	GATC	9 cut(s)	8, 46, 71, 87, 130, 160, 739, 807, 829
BstMAI	GTCTC	2 cut(s)	444, 717
BstMBI	GATC	9 cut(s)	5, 43, 68, 84, 127, 157, 736, 804, 826
BstMWI	GCNNNNNNNGC	7 cut(s)	72, 245, 375, 425, 593, 700, 935
BstUI	CGCG	1 cut(s)	348
BstV1I	GCAGC	1 cut(s)	638
BstV2I	GAAGAC	1 cut(s)	1002
BstX2I	RGATCY	5 cut(s)	5, 68, 84, 127, 826
BstYI	RGATCY	5 cut(s)	5, 68, 84, 127, 826
Bsu15I	ATCGAT	1 cut(s)	42
BsuTUI	ATCGAT	1 cut(s)	42
BtgZI	GCGATG	3 cut(s)	6, 363, 948
BtsCI	GGATG	2 cut(s)	634, 770
BtsIMutI	CAGTG	2 cut(s)	880, 990
CciI	TCATGA	1 cut(s)	91
CfoI	GCGC	4 cut(s)	316, 335, 380, 413
Cfr10I	RCCGGY	3 cut(s)	203, 221, 641
Cfr13I	GGNCC	1 cut(s)	914
ClaI	ATCGAT	1 cut(s)	42
CseI	GACGC	2 cut(s)	214, 274
Csp6I	GTAC	3 cut(s)	207, 810, 971
CspAI	ACCGGT	1 cut(s)	203
CspCI	CAANNNNNGTGG	4 cut(s)	748, 783, 832, 867
CviAII	CATG	4 cut(s)	92, 320, 592, 1028
CviQI	GTAC	3 cut(s)	207, 810, 971
DdeI	CTNAG	1 cut(s)	872
DinI	GGCGCC	1 cut(s)	379
DpnI	GATC	9 cut(s)	7, 45, 70, 86, 129, 159, 738, 806, 828
DpnII	GATC	9 cut(s)	5, 43, 68, 84, 127, 157, 736, 804, 826
Eam1104I	CTCTTC	5 cut(s)	15, 116, 507, 612, 693
EarI	CTCTTC	5 cut(s)	15, 116, 507, 612, 693
EciI	GGCGGA	1 cut(s)	81
Eco130I	CCWWGG	1 cut(s)	612
Eco47I	GGWCC	1 cut(s)	914
Eco57I	CTGAAG	2 cut(s)	349, 488
EcoT14I	CCWWGG	1 cut(s)	612
EgeI	GGCGCC	1 cut(s)	379
EheI	GGCGCC	1 cut(s)	379
ErhI	CCWWGG	1 cut(s)	612
FaeI	CATG	4 cut(s)	95, 323, 595, 1031
FaiI	YATR	8 cut(s)	93, 321, 485, 593, 624, 686, 941, 1029
FalI	AAGNNNNNCTT	2 cut(s)	687, 719
FaqI	GGGAC	1 cut(s)	389
FatI	CATG	4 cut(s)	91, 319, 591, 1027
FauI	CCCGC	1 cut(s)	646
Fnu4HI	GCNGC	2 cut(s)	597, 627
FokI	GGATG	2 cut(s)	621, 777
Fsp4HI	GCNGC	2 cut(s)	597, 627
FspBI	CTAG	5 cut(s)	26, 173, 414, 600, 849
GlaI	GCGC	4 cut(s)	315, 334, 379, 412
GluI	GCNGC	2 cut(s)	597, 627
GsaI	CCCAGC	1 cut(s)	124
HaeII	RGCGCY	2 cut(s)	336, 381
HapII	CCGG	5 cut(s)	204, 222, 536, 642, 917
HgaI	GACGC	2 cut(s)	214, 274
HhaI	GCGC	4 cut(s)	316, 335, 380, 413
Hin1I	GRCGYC	2 cut(s)	225, 378
Hin1II	CATG	4 cut(s)	95, 323, 595, 1031
Hin6I	GCGC	4 cut(s)	314, 333, 378, 411
HinP1I	GCGC	4 cut(s)	314, 333, 378, 411
HindIII	AAGCTT	1 cut(s)	280
HinfI	GANTC	5 cut(s)	460, 553, 648, 838, 953
HpaII	CCGG	5 cut(s)	204, 222, 536, 642, 917
HphI	GGTGA	6 cut(s)	211, 335, 550, 581, 685, 948
Hpy188I	TCNGA	4 cut(s)	507, 558, 837, 1052
Hpy188III	TCNNGA	3 cut(s)	92, 155, 308
Hpy99I	CGWCG	2 cut(s)	230, 837
HpyAV	CCTTC	1 cut(s)	713
HpyCH4III	ACNGT	2 cut(s)	211, 975
HpyCH4V	TGCA	4 cut(s)	493, 626, 891, 1027
HpyF10VI	GCNNNNNNNGC	7 cut(s)	72, 245, 375, 425, 593, 700, 935
HpyF3I	CTNAG	1 cut(s)	872
Hsp92I	GRCGYC	2 cut(s)	225, 378
Hsp92II	CATG	4 cut(s)	95, 323, 595, 1031
HspAI	GCGC	4 cut(s)	314, 333, 378, 411
KasI	GGCGCC	1 cut(s)	377
KpnI	GGTACC	1 cut(s)	210
Kzo9I	GATC	9 cut(s)	5, 43, 68, 84, 127, 157, 736, 804, 826
LguI	GCTCTTC	1 cut(s)	693
LmnI	GCTCC	4 cut(s)	388, 425, 538, 748
Lsp1109I	GCAGC	1 cut(s)	638
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	5 cut(s)	26, 173, 414, 600, 849
MaeIII	GTNAC	3 cut(s)	323, 538, 1018
MalI	GATC	9 cut(s)	7, 45, 70, 86, 129, 159, 738, 806, 828
MboI	GATC	9 cut(s)	5, 43, 68, 84, 127, 157, 736, 804, 826
MfeI	CAATTG	1 cut(s)	909
MflI	RGATCY	5 cut(s)	5, 68, 84, 127, 826
MluCI	AATT	5 cut(s)	49, 512, 740, 909, 1014
Mly113I	GGCGCC	1 cut(s)	378
MlyI	GAGTC	1 cut(s)	832
MmeI	TCCRAC	2 cut(s)	815, 859
MroXI	GAANNNNTTC	1 cut(s)	702
MseI	TTAA	3 cut(s)	278, 525, 662
MspA1I	CMGCKG	1 cut(s)	1043
MspCI	CTTAAG	1 cut(s)	277
MspI	CCGG	5 cut(s)	204, 222, 536, 642, 917
MunI	CAATTG	1 cut(s)	909
Mva1269I	GAATGC	1 cut(s)	186
MvnI	CGCG	1 cut(s)	348
MwoI	GCNNNNNNNGC	7 cut(s)	72, 245, 375, 425, 593, 700, 935
NarI	GGCGCC	1 cut(s)	378
NdeII	GATC	9 cut(s)	5, 43, 68, 84, 127, 157, 736, 804, 826
NlaIII	CATG	4 cut(s)	95, 323, 595, 1031
NlaIV	GGNNCC	4 cut(s)	70, 208, 379, 427
NmeAIII	GCCGAG	1 cut(s)	927
NmuCI	GTSAC	2 cut(s)	323, 538
PagI	TCATGA	1 cut(s)	91
PciSI	GCTCTTC	1 cut(s)	693
PctI	GAATGC	1 cut(s)	186
PdmI	GAANNNNTTC	1 cut(s)	702
PfeI	GAWTC	4 cut(s)	460, 553, 648, 953
PflMI	CCANNNNNTGG	1 cut(s)	470
PinAI	ACCGGT	1 cut(s)	203
PkrI	GCNGC	2 cut(s)	598, 628
PleI	GAGTC	1 cut(s)	832
PluTI	GGCGCC	1 cut(s)	381
PpsI	GAGTC	1 cut(s)	832
PspFI	CCCAGC	1 cut(s)	120
PspN4I	GGNNCC	4 cut(s)	70, 208, 379, 427
PspPI	GGNCC	1 cut(s)	914
PsuI	RGATCY	5 cut(s)	5, 68, 84, 127, 826
PvuII	CAGCTG	1 cut(s)	1043
RsaI	GTAC	3 cut(s)	208, 811, 972
RsaNI	GTAC	3 cut(s)	207, 810, 971
SapI	GCTCTTC	1 cut(s)	693
SaqAI	TTAA	3 cut(s)	278, 525, 662
SatI	GCNGC	2 cut(s)	597, 627
Sau3AI	GATC	9 cut(s)	5, 43, 68, 84, 127, 157, 736, 804, 826
Sau96I	GGNCC	1 cut(s)	914
SchI	GAGTC	1 cut(s)	832
SfaNI	GCATC	1 cut(s)	301
SfoI	GGCGCC	1 cut(s)	379
SgrAI	CRCCGGYG	1 cut(s)	221
SinI	GGWCC	1 cut(s)	914
SmlI	CTYRAG	2 cut(s)	277, 842
SmoI	CTYRAG	2 cut(s)	277, 842
Sse9I	AATT	5 cut(s)	49, 512, 740, 909, 1014
SsiI	CCGC	6 cut(s)	17, 66, 237, 596, 639, 959
SspDI	GGCGCC	1 cut(s)	377
SspI	AATATT	1 cut(s)	864
SspMI	CTAG	5 cut(s)	26, 173, 414, 600, 849
StyI	CCWWGG	1 cut(s)	612
TaaI	ACNGT	2 cut(s)	211, 975
TaqI	TCGA	3 cut(s)	42, 156, 309
TasI	AATT	5 cut(s)	49, 512, 740, 909, 1014
TatI	WGTACW	1 cut(s)	970
TauI	GCSGC	1 cut(s)	599
TfiI	GAWTC	4 cut(s)	460, 553, 648, 953
Tru1I	TTAA	3 cut(s)	278, 525, 662
Tru9I	TTAA	3 cut(s)	278, 525, 662
TscAI	CASTG	2 cut(s)	880, 990
TseFI	GTSAC	2 cut(s)	323, 538
TseI	GCWGC	1 cut(s)	626
Tsp45I	GTSAC	2 cut(s)	323, 538
TspDTI	ATGAA	6 cut(s)	308, 500, 701, 804, 956, 1008
TspGWI	ACGGA	3 cut(s)	275, 386, 510
TspRI	CASTG	2 cut(s)	880, 990
Van91I	CCANNNNNTGG	1 cut(s)	470
Vha464I	CTTAAG	1 cut(s)	277
VpaK11BI	GGWCC	1 cut(s)	914
XmnI	GAANNNNTTC	1 cut(s)	702
XspI	CTAG	5 cut(s)	26, 173, 414, 600, 849

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.