Rh6DG301000

Belongs to the SIS family. GutQ KpsF subfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Reverse (-)
50182004 .. 50183935
1932 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG301000.1

Sequence Viewer

Length: 1059 bp
ATGGGGTCTCTTCCGCCGCCGCCCTCGTTGTCGTCGGACCTCCTCCACCCACATTCCTCTACCAAACCAACCACCCCATCCCAATCCCCAATTGACGAAACTACCCTCCTAAACCTGTTCAAATCCCAACAGAGCCACCTCAACTTCTTCTTCCAGCACCTCGACCTCTCCCAGACCCTCTCCTTCACCCGCACCCTCCTCCGCTCCTCCGGCACCATCTTCTTCTCCGGCGTCGGCAAGTCCGGCTTCGTCGCCAACAAGATCTCCCAGACCCTCGTCTCCCTCGGCATCCGCTCCGCCTTCCTCTCCCCCCTCGACGCCCTCCACGGCGACATCGGCATTCTCGCCGCCGCCGACGTCCTCGTCCTCTTCAGCAAGTCCGGCAACACCGACGAGCTCCTCCGCCTCGTCCCCTGCGCCAAGGCCAAGGGCGCCTTCCTCATCTCCGTCACCTCCGTCGACGGCAATGCCCTCGCCTCCGTCTGCGACATGAACGTGCATTTGCCCTTGGAGAGGGAGCTCTGCCCCTTCGATTTGGCTCCGGTCACCTCCACCGCCATCCAGATGGTCTTCGGCGACACCGTCGCCATCGCCCTCATGGGCGCCAGAAACCTCACCAAGGAGCAATACGCCGCCAATCACCCCGCCGGTCGGATCGGAAAGTCCCTCATCTTCAAGGTGAGAGATGTGATGAAGAAAGAAGAGGAGTTACCGGTGTGCAAGGAAGGGGACATGATAATGGAGCAATTGGTGGAGCTAACAAGCAAGGGATGTGGCTGCTTGCTTGTGATCGACGACGAGCATCATCTGATAGGGACATTTACCGATGGAGATCTCCGGCGGACTCTCAAGGCGAGCGGAGAGGCCATCTTCAAGCTCACAGTTGGGGAAATGTGCAACAGGAACCCGAGGACTATTGGGCCGGACGCAATGGCTGTCGACGCCATGCAGAAAATGGAAGCTCCTCCTTCCCCTGTGCAGTTCTTGCCTGTCATCGATGAGAAGAATGTAGTGATTGGCATTGTCACTCTGCATGGATTGGTTTCGGCTGGCCTTTGA

Protein Analysis

352

Amino Acids

37.76

Weight (kDa)

5.93

Isoelectric Point (pI)

34.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SIS PF01380 67 - 197 6.6e-18 SIS domain
CBS PF00571 227 - 283 5.3e-06 CBS domain
CBS PF00571 295 - 350 4.4e-08 CBS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012365)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 362
AatII GACGTC 1 cut(s) 360
AccB1I GGYRCC 3 cut(s) 212, 431, 602
AccBSI CCGCTC 3 cut(s) 204, 294, 858
AccI GTMKAC 2 cut(s) 459, 939
AclWI GGATC 1 cut(s) 662
AcuI CTGAAG 1 cut(s) 355
AcyI GRCGYC 6 cut(s) 231, 318, 357, 432, 603, 942
AfiI CCNNNNNNNGG 3 cut(s) 513, 619, 651
AgeI ACCGGT 1 cut(s) 712
AgsI TTSAA 3 cut(s) 121, 676, 874
AjuI GAANNNNNNNTTGG 2 cut(s) 419, 451
AluBI AGCT 5 cut(s) 397, 520, 757, 877, 962
AluI AGCT 5 cut(s) 397, 520, 757, 877, 962
Alw21I GWGCWC 2 cut(s) 399, 522
Alw26I GTCTC 2 cut(s) 12, 283
AlwI GGATC 1 cut(s) 662
Ama87I CYCGRG 1 cut(s) 907
AoxI GGCC 4 cut(s) 423, 864, 920, 1051
ApeKI GCWGC 1 cut(s) 777
AsiGI ACCGGT 1 cut(s) 712
AspLEI GCGC 3 cut(s) 419, 434, 605
AspS9I GGNCC 2 cut(s) 37, 920
AsuHPI GGTGA 6 cut(s) 178, 442, 538, 607, 632, 691
AvaI CYCGRG 1 cut(s) 907
AvaII GGWCC 1 cut(s) 37
BanI GGYRCC 3 cut(s) 212, 431, 602
BanII GRGCYC 2 cut(s) 399, 522
BarI GAAGNNNNNNTAC 2 cut(s) 693, 725
BbsI GAAGAC 1 cut(s) 562
Bbv12I GWGCWC 2 cut(s) 399, 522
BbvI GCAGC 1 cut(s) 764
BccI CCATC 7 cut(s) 85, 224, 559, 566, 596, 821, 875
BceAI ACGGC 2 cut(s) 343, 478
BcgI CGANNNNNNTGC 4 cut(s) 449, 454, 483, 488
BcoDI GTCTC 2 cut(s) 12, 283
BfoI RGCGCY 2 cut(s) 435, 606
BglII AGATCT 2 cut(s) 261, 832
BisI GCNGC 6 cut(s) 17, 20, 348, 351, 633, 778
BlsI GCNGC 6 cut(s) 18, 21, 349, 352, 634, 779
Bme18I GGWCC 1 cut(s) 37
BmeT110I CYCGRG 1 cut(s) 907
BmgT120I GGNCC 2 cut(s) 37, 920
BmiI GGNNCC 5 cut(s) 214, 433, 540, 604, 905
BmsI GCATC 2 cut(s) 297, 811
BoxI GACNNNNGTC 1 cut(s) 275
BpiI GAAGAC 1 cut(s) 562
BpuEI CTTGAG 1 cut(s) 833
Bsa29I ATCGAT 1 cut(s) 996
BsaBI GATNNNNATC 1 cut(s) 831
BsaHI GRCGYC 6 cut(s) 231, 318, 357, 432, 603, 942
BsaI GGTCTC 1 cut(s) 12
BsaJI CCNNGG 7 cut(s) 283, 325, 420, 426, 507, 618, 908
BsaWI WCCGGW 2 cut(s) 541, 712
BsaXI ACNNNNNCTCC 2 cut(s) 248, 278
Bsc4I CCNNNNNNNGG 3 cut(s) 513, 619, 651
Bse118I RCCGGY 2 cut(s) 647, 712
Bse3DI GCAATG 2 cut(s) 472, 936
Bse8I GATNNNNATC 1 cut(s) 831
BseCI ATCGAT 1 cut(s) 996
BseDI CCNNGG 7 cut(s) 283, 325, 420, 426, 507, 618, 908
BseGI GGATG 4 cut(s) 77, 288, 558, 776
BseJI GATNNNNATC 1 cut(s) 831
BseLI CCNNNNNNNGG 3 cut(s) 513, 619, 651
BseMI GCAATG 2 cut(s) 472, 936
BseRI GAGGAG 6 cut(s) 32, 188, 196, 389, 719, 954
BseXI GCAGC 1 cut(s) 764
BsgI GTGCAG 1 cut(s) 998
Bsh1285I CGRYCG 1 cut(s) 652
BshFI GGCC 4 cut(s) 425, 866, 922, 1053
BshNI GGYRCC 3 cut(s) 212, 431, 602
BshTI ACCGGT 1 cut(s) 712
BshVI ATCGAT 1 cut(s) 996
BsiEI CGRYCG 1 cut(s) 652
BsiHKAI GWGCWC 2 cut(s) 399, 522
BsiHKCI CYCGRG 1 cut(s) 907
BsiSI CCGG 9 cut(s) 210, 228, 243, 381, 542, 648, 713, 838, 923
BslFI GGGAC 4 cut(s) 395, 649, 743, 829
BslI CCNNNNNNNGG 3 cut(s) 513, 619, 651
BsmAI GTCTC 2 cut(s) 12, 283
BsmBI CGTCTC 1 cut(s) 283
BsmFI GGGAC 4 cut(s) 395, 649, 743, 829
BsmI GAATGC 1 cut(s) 339
BsnI GGCC 4 cut(s) 425, 866, 922, 1053
Bso31I GGTCTC 1 cut(s) 12
BsoBI CYCGRG 1 cut(s) 907
Bsp1286I GDGCHC 2 cut(s) 399, 522
Bsp143I GATC 4 cut(s) 261, 654, 789, 832
BspANI GGCC 4 cut(s) 425, 866, 922, 1053
BspDI ATCGAT 1 cut(s) 996
BspLI GGNNCC 5 cut(s) 214, 433, 540, 604, 905
BspPI GGATC 1 cut(s) 662
BspT107I GGYRCC 3 cut(s) 212, 431, 602
BspTNI GGTCTC 1 cut(s) 12
BsrBI CCGCTC 3 cut(s) 204, 294, 858
BsrDI GCAATG 2 cut(s) 472, 936
BsrFI RCCGGY 2 cut(s) 647, 712
BssAI RCCGGY 2 cut(s) 647, 712
BssECI CCNNGG 7 cut(s) 283, 325, 420, 426, 507, 618, 908
BssMI GATC 4 cut(s) 261, 654, 789, 832
BssNI GRCGYC 6 cut(s) 231, 318, 357, 432, 603, 942
BssT1I CCWWGG 4 cut(s) 420, 426, 507, 618
Bst4CI ACNGT 2 cut(s) 583, 883
Bst6I CTCTTC 3 cut(s) 15, 374, 696
BstACI GRCGYC 6 cut(s) 231, 318, 357, 432, 603, 942
BstAPI GCANNNNNTGC 1 cut(s) 985
BstC8I GCNNGC 3 cut(s) 782, 856, 1051
BstDSI CCRYGG 1 cut(s) 325
BstEII GGTNACC 1 cut(s) 544
BstENI CCTNNNNNAGG 2 cut(s) 511, 617
BstF5I GGATG 4 cut(s) 77, 288, 558, 776
BstH2I RGCGCY 2 cut(s) 435, 606
BstHHI GCGC 3 cut(s) 419, 434, 605
BstKTI GATC 4 cut(s) 264, 657, 792, 835
BstMAI GTCTC 2 cut(s) 12, 283
BstMBI GATC 4 cut(s) 261, 654, 789, 832
BstMCI CGRYCG 1 cut(s) 652
BstMWI GCNNNNNNNGC 7 cut(s) 210, 243, 336, 381, 431, 941, 985
BstPAI GACNNNNGTC 1 cut(s) 275
BstPI GGTNACC 1 cut(s) 544
BstV1I GCAGC 1 cut(s) 764
BstV2I GAAGAC 1 cut(s) 562
BstX2I RGATCY 2 cut(s) 261, 832
BstXI CCANNNNNNTGG 1 cut(s) 565
BstYI RGATCY 2 cut(s) 261, 832
Bsu15I ATCGAT 1 cut(s) 996
BsuRI GGCC 4 cut(s) 425, 866, 922, 1053
BsuTUI ATCGAT 1 cut(s) 996
BtgI CCRYGG 1 cut(s) 325
BtgZI GCGATG 1 cut(s) 574
BtsCI GGATG 4 cut(s) 77, 288, 558, 776
Cac8I GCNNGC 3 cut(s) 782, 856, 1051
CfoI GCGC 3 cut(s) 419, 434, 605
Cfr10I RCCGGY 2 cut(s) 647, 712
Cfr13I GGNCC 2 cut(s) 37, 920
ClaI ATCGAT 1 cut(s) 996
CseI GACGC 4 cut(s) 220, 326, 935, 950
CspAI ACCGGT 1 cut(s) 712
CspCI CAANNNNNGTGG 2 cut(s) 754, 789
CviAII CATG 5 cut(s) 490, 598, 733, 946, 1034
DinI GGCGCC 2 cut(s) 433, 604
DpnI GATC 4 cut(s) 263, 656, 791, 834
DpnII GATC 4 cut(s) 261, 654, 789, 832
DrdI GACNNNNNNGTC 1 cut(s) 362
DseDI GACNNNNNNGTC 1 cut(s) 362
Eam1104I CTCTTC 3 cut(s) 15, 374, 696
EarI CTCTTC 3 cut(s) 15, 374, 696
EciI GGCGGA 3 cut(s) 286, 392, 856
Ecl136II GAGCTC 2 cut(s) 397, 520
Eco130I CCWWGG 4 cut(s) 420, 426, 507, 618
Eco24I GRGCYC 2 cut(s) 399, 522
Eco31I GGTCTC 1 cut(s) 12
Eco47I GGWCC 1 cut(s) 37
Eco53kI GAGCTC 2 cut(s) 397, 520
Eco57I CTGAAG 1 cut(s) 355
Eco88I CYCGRG 1 cut(s) 907
Eco91I GGTNACC 1 cut(s) 544
EcoICRI GAGCTC 2 cut(s) 397, 520
EcoNI CCTNNNNNAGG 2 cut(s) 511, 617
EcoO65I GGTNACC 1 cut(s) 544
EcoT14I CCWWGG 4 cut(s) 420, 426, 507, 618
EcoT38I GRGCYC 2 cut(s) 399, 522
EgeI GGCGCC 2 cut(s) 433, 604
EheI GGCGCC 2 cut(s) 433, 604
ErhI CCWWGG 4 cut(s) 420, 426, 507, 618
Esp3I CGTCTC 1 cut(s) 283
FaeI CATG 5 cut(s) 493, 601, 736, 949, 1037
FaiI YATR 5 cut(s) 491, 599, 734, 947, 1035
FalI AAGNNNNNCTT 4 cut(s) 230, 262, 419, 451
FaqI GGGAC 4 cut(s) 395, 649, 743, 829
FatI CATG 5 cut(s) 489, 597, 732, 945, 1033
FauI CCCGC 2 cut(s) 197, 652
FblI GTMKAC 2 cut(s) 459, 939
Fnu4HI GCNGC 6 cut(s) 17, 20, 348, 351, 633, 778
FokI GGATG 4 cut(s) 64, 275, 545, 783
FriOI GRGCYC 2 cut(s) 399, 522
Fsp4HI GCNGC 6 cut(s) 17, 20, 348, 351, 633, 778
GlaI GCGC 3 cut(s) 418, 433, 604
GluI GCNGC 6 cut(s) 17, 20, 348, 351, 633, 778
HaeII RGCGCY 2 cut(s) 435, 606
HaeIII GGCC 4 cut(s) 425, 866, 922, 1053
HapII CCGG 9 cut(s) 210, 228, 243, 381, 542, 648, 713, 838, 923
HgaI GACGC 4 cut(s) 220, 326, 935, 950
HhaI GCGC 3 cut(s) 419, 434, 605
Hin1I GRCGYC 6 cut(s) 231, 318, 357, 432, 603, 942
Hin1II CATG 5 cut(s) 493, 601, 736, 949, 1037
Hin6I GCGC 3 cut(s) 417, 432, 603
HinP1I GCGC 3 cut(s) 417, 432, 603
HincII GTYRAC 2 cut(s) 460, 940
HindII GTYRAC 2 cut(s) 460, 940
HinfI GANTC 1 cut(s) 844
HpaII CCGG 9 cut(s) 210, 228, 243, 381, 542, 648, 713, 838, 923
HphI GGTGA 6 cut(s) 178, 442, 538, 607, 632, 691
Hpy166II GTNNAC 2 cut(s) 460, 940
Hpy188I TCNGA 4 cut(s) 37, 654, 659, 810
Hpy188III TCNNGA 1 cut(s) 562
Hpy8I GTNNAC 2 cut(s) 460, 940
HpyAV CCTTC 6 cut(s) 193, 310, 445, 538, 719, 978
HpyCH4III ACNGT 2 cut(s) 583, 883
HpyCH4IV ACGT 2 cut(s) 357, 495
HpyCH4V TGCA 6 cut(s) 499, 720, 897, 949, 979, 1033
HpyF10VI GCNNNNNNNGC 7 cut(s) 210, 243, 336, 381, 431, 941, 985
HpySE526I ACGT 2 cut(s) 357, 495
Hsp92I GRCGYC 6 cut(s) 231, 318, 357, 432, 603, 942
Hsp92II CATG 5 cut(s) 493, 601, 736, 949, 1037
HspAI GCGC 3 cut(s) 417, 432, 603
KasI GGCGCC 2 cut(s) 431, 602
Kzo9I GATC 4 cut(s) 261, 654, 789, 832
LmnI GCTCC 9 cut(s) 209, 299, 402, 517, 544, 622, 742, 754, 967
Lsp1109I GCAGC 1 cut(s) 764
LweI GCATC 2 cut(s) 297, 811
MaeII ACGT 2 cut(s) 357, 495
MaeIII GTNAC 4 cut(s) 448, 544, 708, 1024
MalI GATC 4 cut(s) 263, 656, 791, 834
MbiI CCGCTC 3 cut(s) 204, 294, 858
MboI GATC 4 cut(s) 261, 654, 789, 832
MfeI CAATTG 2 cut(s) 90, 746
MflI RGATCY 2 cut(s) 261, 832
MhlI GDGCHC 2 cut(s) 399, 522
MluCI AATT 2 cut(s) 90, 746
Mly113I GGCGCC 2 cut(s) 432, 603
MlyI GAGTC 1 cut(s) 838
MmeI TCCRAC 2 cut(s) 15, 632
MslI CAYNNNNRTG 3 cut(s) 494, 563, 737
MspI CCGG 9 cut(s) 210, 228, 243, 381, 542, 648, 713, 838, 923
MunI CAATTG 2 cut(s) 90, 746
Mva1269I GAATGC 1 cut(s) 339
MwoI GCNNNNNNNGC 7 cut(s) 210, 243, 336, 381, 431, 941, 985
NarI GGCGCC 2 cut(s) 432, 603
NdeII GATC 4 cut(s) 261, 654, 789, 832
NlaIII CATG 5 cut(s) 493, 601, 736, 949, 1037
NlaIV GGNNCC 5 cut(s) 214, 433, 540, 604, 905
NmeAIII GCCGAG 1 cut(s) 264
NmuCI GTSAC 3 cut(s) 448, 544, 1024
PcsI WCGNNNNNNNCGW 2 cut(s) 351, 579
PctI GAATGC 1 cut(s) 339
PflFI GACNNNGTC 1 cut(s) 581
PinAI ACCGGT 1 cut(s) 712
PkrI GCNGC 6 cut(s) 18, 21, 349, 352, 634, 779
PleI GAGTC 1 cut(s) 838
PluTI GGCGCC 2 cut(s) 435, 606
PpsI GAGTC 1 cut(s) 838
PshAI GACNNNNGTC 1 cut(s) 275
Psp124BI GAGCTC 2 cut(s) 399, 522
PspEI GGTNACC 1 cut(s) 544
PspN4I GGNNCC 5 cut(s) 214, 433, 540, 604, 905
PspPI GGNCC 2 cut(s) 37, 920
PsuI RGATCY 2 cut(s) 261, 832
PsyI GACNNNGTC 1 cut(s) 581
RseI CAYNNNNRTG 3 cut(s) 494, 563, 737
SacI GAGCTC 2 cut(s) 399, 522
SalI GTCGAC 2 cut(s) 458, 938
SatI GCNGC 6 cut(s) 17, 20, 348, 351, 633, 778
Sau3AI GATC 4 cut(s) 261, 654, 789, 832
Sau96I GGNCC 2 cut(s) 37, 920
SchI GAGTC 1 cut(s) 838
SduI GDGCHC 2 cut(s) 399, 522
SfaNI GCATC 2 cut(s) 297, 811
SfoI GGCGCC 2 cut(s) 433, 604
SgrDI CGTCGACG 1 cut(s) 458
SinI GGWCC 1 cut(s) 37
SmiMI CAYNNNNRTG 3 cut(s) 494, 563, 737
SmlI CTYRAG 1 cut(s) 848
SmoI CTYRAG 1 cut(s) 848
Sse9I AATT 2 cut(s) 90, 746
SspDI GGCGCC 2 cut(s) 431, 602
SstI GAGCTC 2 cut(s) 399, 522
StyI CCWWGG 4 cut(s) 420, 426, 507, 618
TaaI ACNGT 2 cut(s) 583, 883
TaiI ACGT 2 cut(s) 360, 498
TaqI TCGA 7 cut(s) 162, 315, 459, 531, 792, 939, 996
TasI AATT 2 cut(s) 90, 746
TauI GCSGC 5 cut(s) 19, 22, 350, 353, 635
TseFI GTSAC 3 cut(s) 448, 544, 1024
TseI GCWGC 1 cut(s) 777
Tsp45I GTSAC 3 cut(s) 448, 544, 1024
TspDTI ATGAA 2 cut(s) 506, 707
TspGWI ACGGA 3 cut(s) 436, 445, 469
Tth111I GACNNNGTC 1 cut(s) 581
VpaK11BI GGWCC 1 cut(s) 37
XagI CCTNNNNNAGG 2 cut(s) 511, 617
XcmI CCANNNNNNNNNTGG 2 cut(s) 595, 952
XmiI GTMKAC 2 cut(s) 459, 939
ZraI GACGTC 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.