Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8244583.1

Orthogroup ID

OG0012365

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 741

Gene Structure 741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8244583.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

atggggtctcttccgccgccgccctcgttgtcgtcggacctcctccacccacattcctctaccaaaccaaccaccccatcccaatccccaattgacgaaaccaccctcctaaacctgttcaaatcccaacagagccacctcaacttcttcttccagcacctcgacctctcccagaccctctccttcacccgcaccctcctccgctcctccggcaccatcttcttctccggcgtcggcaagtccggcttcgtcgccaacaagatctcccagacgctcgtctccctcggcatccgctccgccttcctctcccccctcgacgccctccacggcgacatcggcattctcgccgccgccgacgtcctcgtcctcttcagcaagtccggcaacaccgacgagctcctccgcctcgtcccctgcgccaaggccaagggcgccttcctcatctccgtcacctccgtcgacggcaatgccctcgcctccgtctgcgacatgaacgtgcatttgcccttggagagggagctctgccccttcgatttggctccggtcacctccaccgccatccagatggtcttcggcgacaccgtcgccatcgccctcatgggcgccagaaacctcaccaaggagcaatacgccgccaatcaccccgccggtcggatcggaaagtccctcatcttcaaggtccggtttccaatccctaaatccccaatttctagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003938 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006183 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009163 GO:0009165 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042278 GO:0042451 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046039 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0055086 GO:0055114 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901068 GO:1901070 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

CBS SIS

Protein Analysis

238

Amino Acids

25.44

Weight (kDa)

9.1

Isoelectric Point (pI)

37.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54690
fragaria_vesca	FvH4_2g21300
malus_domestica	MD05G1195500.v1.1 MD10G1182800.v1.1
prunus_persica	Prupe.8G222200_v2.0.a1
pyrus_communis	pycom05g18280 pycom10g15810
rosa_chinensis	RchiOBHm_Chr6g0287891
rosa_laevigata	RLG00000012458
rosa_multiflora	Rmu_co8244583.1_g000001 Rmu_sc0003163.1_g000003
rosa_roxburghii	Rroxscaffold_7G00180860
rosa_rugosa	Rorug06G0193300
rosa_samantha	Rh6AG302400 Rh6BG308600 Rh6CG301100 Rh6CG316300 Rh6DG301000
rosa_wichuraiana	Rw6G026130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	362
AatII	GACGTC	1 cut(s)	360
AccB1I	GGYRCC	3 cut(s)	212, 431, 602
AccBSI	CCGCTC	2 cut(s)	204, 294
AccI	GTMKAC	1 cut(s)	459
AclWI	GGATC	1 cut(s)	662
AcuI	CTGAAG	1 cut(s)	355
AcyI	GRCGYC	5 cut(s)	231, 318, 357, 432, 603
AfiI	CCNNNNNNNGG	3 cut(s)	513, 619, 651
AgsI	TTSAA	2 cut(s)	121, 676
AjuI	GAANNNNNNNTTGG	2 cut(s)	419, 451
AluBI	AGCT	2 cut(s)	397, 520
AluI	AGCT	2 cut(s)	397, 520
Alw21I	GWGCWC	2 cut(s)	399, 522
Alw26I	GTCTC	2 cut(s)	12, 283
AlwI	GGATC	1 cut(s)	662
AoxI	GGCC	1 cut(s)	423
AspLEI	GCGC	3 cut(s)	419, 434, 605
AspS9I	GGNCC	2 cut(s)	37, 679
AsuHPI	GGTGA	5 cut(s)	178, 442, 538, 607, 632
AvaII	GGWCC	2 cut(s)	37, 679
BanI	GGYRCC	3 cut(s)	212, 431, 602
BanII	GRGCYC	2 cut(s)	399, 522
BbsI	GAAGAC	1 cut(s)	562
Bbv12I	GWGCWC	2 cut(s)	399, 522
BccI	CCATC	5 cut(s)	85, 224, 559, 566, 596
BceAI	ACGGC	2 cut(s)	343, 478
BcgI	CGANNNNNNTGC	4 cut(s)	449, 454, 483, 488
BcoDI	GTCTC	2 cut(s)	12, 283
BfaI	CTAG	1 cut(s)	711
BfoI	RGCGCY	2 cut(s)	435, 606
BglII	AGATCT	1 cut(s)	261
BisI	GCNGC	5 cut(s)	17, 20, 348, 351, 633
BlsI	GCNGC	5 cut(s)	18, 21, 349, 352, 634
Bme18I	GGWCC	2 cut(s)	37, 679
BmgT120I	GGNCC	2 cut(s)	37, 679
BmiI	GGNNCC	4 cut(s)	214, 433, 540, 604
BmsI	GCATC	1 cut(s)	297
BoxI	GACNNNNGTC	1 cut(s)	275
BpiI	GAAGAC	1 cut(s)	562
BsaHI	GRCGYC	5 cut(s)	231, 318, 357, 432, 603
BsaI	GGTCTC	1 cut(s)	12
BsaJI	CCNNGG	6 cut(s)	283, 325, 420, 426, 507, 618
BsaWI	WCCGGW	2 cut(s)	541, 681
BsaXI	ACNNNNNCTCC	2 cut(s)	248, 278
Bsc4I	CCNNNNNNNGG	3 cut(s)	513, 619, 651
Bse118I	RCCGGY	1 cut(s)	647
Bse3DI	GCAATG	1 cut(s)	472
BseDI	CCNNGG	6 cut(s)	283, 325, 420, 426, 507, 618
BseGI	GGATG	3 cut(s)	77, 288, 558
BseLI	CCNNNNNNNGG	3 cut(s)	513, 619, 651
BseMI	GCAATG	1 cut(s)	472
BseRI	GAGGAG	4 cut(s)	32, 188, 196, 389
Bsh1285I	CGRYCG	1 cut(s)	652
BshFI	GGCC	1 cut(s)	425
BshNI	GGYRCC	3 cut(s)	212, 431, 602
BsiEI	CGRYCG	1 cut(s)	652
BsiHKAI	GWGCWC	2 cut(s)	399, 522
BsiSI	CCGG	7 cut(s)	210, 228, 243, 381, 542, 648, 682
BslFI	GGGAC	2 cut(s)	395, 649
BslI	CCNNNNNNNGG	3 cut(s)	513, 619, 651
BsmAI	GTCTC	2 cut(s)	12, 283
BsmBI	CGTCTC	1 cut(s)	283
BsmFI	GGGAC	2 cut(s)	395, 649
BsmI	GAATGC	1 cut(s)	339
BsnI	GGCC	1 cut(s)	425
Bso31I	GGTCTC	1 cut(s)	12
Bsp1286I	GDGCHC	2 cut(s)	399, 522
Bsp143I	GATC	2 cut(s)	261, 654
BspANI	GGCC	1 cut(s)	425
BspLI	GGNNCC	4 cut(s)	214, 433, 540, 604
BspPI	GGATC	1 cut(s)	662
BspT107I	GGYRCC	3 cut(s)	212, 431, 602
BspTNI	GGTCTC	1 cut(s)	12
BsrBI	CCGCTC	2 cut(s)	204, 294
BsrDI	GCAATG	1 cut(s)	472
BsrFI	RCCGGY	1 cut(s)	647
BssAI	RCCGGY	1 cut(s)	647
BssECI	CCNNGG	6 cut(s)	283, 325, 420, 426, 507, 618
BssMI	GATC	2 cut(s)	261, 654
BssNI	GRCGYC	5 cut(s)	231, 318, 357, 432, 603
BssT1I	CCWWGG	4 cut(s)	420, 426, 507, 618
Bst4CI	ACNGT	1 cut(s)	583
Bst6I	CTCTTC	2 cut(s)	15, 374
BstACI	GRCGYC	5 cut(s)	231, 318, 357, 432, 603
BstDSI	CCRYGG	1 cut(s)	325
BstEII	GGTNACC	1 cut(s)	544
BstENI	CCTNNNNNAGG	2 cut(s)	511, 617
BstF5I	GGATG	3 cut(s)	77, 288, 558
BstH2I	RGCGCY	2 cut(s)	435, 606
BstHHI	GCGC	3 cut(s)	419, 434, 605
BstKTI	GATC	2 cut(s)	264, 657
BstMAI	GTCTC	2 cut(s)	12, 283
BstMBI	GATC	2 cut(s)	261, 654
BstMCI	CGRYCG	1 cut(s)	652
BstMWI	GCNNNNNNNGC	5 cut(s)	210, 243, 336, 381, 431
BstPAI	GACNNNNGTC	1 cut(s)	275
BstPI	GGTNACC	1 cut(s)	544
BstV2I	GAAGAC	1 cut(s)	562
BstX2I	RGATCY	1 cut(s)	261
BstXI	CCANNNNNNTGG	1 cut(s)	565
BstYI	RGATCY	1 cut(s)	261
BsuRI	GGCC	1 cut(s)	425
BtgI	CCRYGG	1 cut(s)	325
BtgZI	GCGATG	1 cut(s)	574
BtsCI	GGATG	3 cut(s)	77, 288, 558
CfoI	GCGC	3 cut(s)	419, 434, 605
Cfr10I	RCCGGY	1 cut(s)	647
Cfr13I	GGNCC	2 cut(s)	37, 679
CseI	GACGC	3 cut(s)	220, 280, 326
CviAII	CATG	2 cut(s)	490, 598
CviJI	RGCY	6 cut(s)	135, 246, 397, 425, 520, 539
CviKI_1	RGCY	6 cut(s)	135, 246, 397, 425, 520, 539
DinI	GGCGCC	2 cut(s)	433, 604
DpnI	GATC	2 cut(s)	263, 656
DpnII	GATC	2 cut(s)	261, 654
DrdI	GACNNNNNNGTC	1 cut(s)	362
DseDI	GACNNNNNNGTC	1 cut(s)	362
Eam1104I	CTCTTC	2 cut(s)	15, 374
EarI	CTCTTC	2 cut(s)	15, 374
EciI	GGCGGA	2 cut(s)	286, 392
Ecl136II	GAGCTC	2 cut(s)	397, 520
Eco130I	CCWWGG	4 cut(s)	420, 426, 507, 618
Eco24I	GRGCYC	2 cut(s)	399, 522
Eco31I	GGTCTC	1 cut(s)	12
Eco47I	GGWCC	2 cut(s)	37, 679
Eco53kI	GAGCTC	2 cut(s)	397, 520
Eco57I	CTGAAG	1 cut(s)	355
Eco91I	GGTNACC	1 cut(s)	544
EcoICRI	GAGCTC	2 cut(s)	397, 520
EcoNI	CCTNNNNNAGG	2 cut(s)	511, 617
EcoO65I	GGTNACC	1 cut(s)	544
EcoT14I	CCWWGG	4 cut(s)	420, 426, 507, 618
EcoT38I	GRGCYC	2 cut(s)	399, 522
EgeI	GGCGCC	2 cut(s)	433, 604
EheI	GGCGCC	2 cut(s)	433, 604
ErhI	CCWWGG	4 cut(s)	420, 426, 507, 618
Esp3I	CGTCTC	1 cut(s)	283
FaeI	CATG	2 cut(s)	493, 601
FaiI	YATR	2 cut(s)	491, 599
FalI	AAGNNNNNCTT	4 cut(s)	230, 262, 419, 451
FaqI	GGGAC	2 cut(s)	395, 649
FatI	CATG	2 cut(s)	489, 597
FauI	CCCGC	2 cut(s)	197, 652
FblI	GTMKAC	1 cut(s)	459
Fnu4HI	GCNGC	5 cut(s)	17, 20, 348, 351, 633
FokI	GGATG	3 cut(s)	64, 275, 545
FriOI	GRGCYC	2 cut(s)	399, 522
Fsp4HI	GCNGC	5 cut(s)	17, 20, 348, 351, 633
FspBI	CTAG	1 cut(s)	711
GlaI	GCGC	3 cut(s)	418, 433, 604
GluI	GCNGC	5 cut(s)	17, 20, 348, 351, 633
HaeII	RGCGCY	2 cut(s)	435, 606
HaeIII	GGCC	1 cut(s)	425
HapII	CCGG	7 cut(s)	210, 228, 243, 381, 542, 648, 682
HgaI	GACGC	3 cut(s)	220, 280, 326
HhaI	GCGC	3 cut(s)	419, 434, 605
Hin1I	GRCGYC	5 cut(s)	231, 318, 357, 432, 603
Hin1II	CATG	2 cut(s)	493, 601
Hin6I	GCGC	3 cut(s)	417, 432, 603
HinP1I	GCGC	3 cut(s)	417, 432, 603
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HpaII	CCGG	7 cut(s)	210, 228, 243, 381, 542, 648, 682
HphI	GGTGA	5 cut(s)	178, 442, 538, 607, 632
Hpy166II	GTNNAC	1 cut(s)	460
Hpy188I	TCNGA	3 cut(s)	37, 654, 659
Hpy188III	TCNNGA	1 cut(s)	562
Hpy8I	GTNNAC	1 cut(s)	460
Hpy99I	CGWCG	9 cut(s)	37, 236, 254, 320, 359, 395, 461, 464, 587
HpyAV	CCTTC	4 cut(s)	193, 310, 445, 538
HpyCH4III	ACNGT	1 cut(s)	583
HpyCH4IV	ACGT	2 cut(s)	357, 495
HpyCH4V	TGCA	1 cut(s)	499
HpyF10VI	GCNNNNNNNGC	5 cut(s)	210, 243, 336, 381, 431
HpySE526I	ACGT	2 cut(s)	357, 495
Hsp92I	GRCGYC	5 cut(s)	231, 318, 357, 432, 603
Hsp92II	CATG	2 cut(s)	493, 601
HspAI	GCGC	3 cut(s)	417, 432, 603
KasI	GGCGCC	2 cut(s)	431, 602
Kzo9I	GATC	2 cut(s)	261, 654
LmnI	GCTCC	6 cut(s)	209, 299, 402, 517, 544, 622
LweI	GCATC	1 cut(s)	297
MaeI	CTAG	1 cut(s)	711
MaeII	ACGT	2 cut(s)	357, 495
MaeIII	GTNAC	2 cut(s)	448, 544
MalI	GATC	2 cut(s)	263, 656
MbiI	CCGCTC	2 cut(s)	204, 294
MboI	GATC	2 cut(s)	261, 654
MboII	GAAGA	7 cut(s)	139, 142, 211, 214, 361, 562, 664
MfeI	CAATTG	1 cut(s)	90
MflI	RGATCY	1 cut(s)	261
MhlI	GDGCHC	2 cut(s)	399, 522
MluCI	AATT	2 cut(s)	90, 705
Mly113I	GGCGCC	2 cut(s)	432, 603
MmeI	TCCRAC	2 cut(s)	15, 632
MslI	CAYNNNNRTG	2 cut(s)	494, 563
MspI	CCGG	7 cut(s)	210, 228, 243, 381, 542, 648, 682
MunI	CAATTG	1 cut(s)	90
Mva1269I	GAATGC	1 cut(s)	339
MwoI	GCNNNNNNNGC	5 cut(s)	210, 243, 336, 381, 431
NarI	GGCGCC	2 cut(s)	432, 603
NdeII	GATC	2 cut(s)	261, 654
NlaIII	CATG	2 cut(s)	493, 601
NlaIV	GGNNCC	4 cut(s)	214, 433, 540, 604
NmeAIII	GCCGAG	1 cut(s)	264
NmuCI	GTSAC	2 cut(s)	448, 544
PcsI	WCGNNNNNNNCGW	2 cut(s)	351, 579
PctI	GAATGC	1 cut(s)	339
PflFI	GACNNNGTC	1 cut(s)	581
PkrI	GCNGC	5 cut(s)	18, 21, 349, 352, 634
PluTI	GGCGCC	2 cut(s)	435, 606
PshAI	GACNNNNGTC	1 cut(s)	275
Psp124BI	GAGCTC	2 cut(s)	399, 522
PspEI	GGTNACC	1 cut(s)	544
PspN4I	GGNNCC	4 cut(s)	214, 433, 540, 604
PspPI	GGNCC	2 cut(s)	37, 679
PsuI	RGATCY	1 cut(s)	261
PsyI	GACNNNGTC	1 cut(s)	581
RseI	CAYNNNNRTG	2 cut(s)	494, 563
SacI	GAGCTC	2 cut(s)	399, 522
SalI	GTCGAC	1 cut(s)	458
SatI	GCNGC	5 cut(s)	17, 20, 348, 351, 633
Sau3AI	GATC	2 cut(s)	261, 654
Sau96I	GGNCC	2 cut(s)	37, 679
SduI	GDGCHC	2 cut(s)	399, 522
SfaNI	GCATC	1 cut(s)	297
SfoI	GGCGCC	2 cut(s)	433, 604
SgrDI	CGTCGACG	1 cut(s)	458
SinI	GGWCC	2 cut(s)	37, 679
SmiMI	CAYNNNNRTG	2 cut(s)	494, 563
Sse9I	AATT	2 cut(s)	90, 705
SspDI	GGCGCC	2 cut(s)	431, 602
SspMI	CTAG	1 cut(s)	711
SstI	GAGCTC	2 cut(s)	399, 522
StyI	CCWWGG	4 cut(s)	420, 426, 507, 618
TaaI	ACNGT	1 cut(s)	583
TaiI	ACGT	2 cut(s)	360, 498
TaqI	TCGA	4 cut(s)	162, 315, 459, 531
TasI	AATT	2 cut(s)	90, 705
TauI	GCSGC	5 cut(s)	19, 22, 350, 353, 635
TseFI	GTSAC	2 cut(s)	448, 544
Tsp45I	GTSAC	2 cut(s)	448, 544
TspDTI	ATGAA	1 cut(s)	506
TspGWI	ACGGA	3 cut(s)	436, 445, 469
Tth111I	GACNNNGTC	1 cut(s)	581
VpaK11BI	GGWCC	2 cut(s)	37, 679
XagI	CCTNNNNNAGG	2 cut(s)	511, 617
XcmI	CCANNNNNNNNNTGG	1 cut(s)	595
XmiI	GTMKAC	1 cut(s)	459
XspI	CTAG	1 cut(s)	711
ZraI	GACGTC	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.