Rroxscaffold_7G00180860

Belongs to the SIS family. GutQ KpsF subfamily

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
20183369 .. 20184553
1185 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00180860.1

Sequence Viewer

Length: 1047 bp
ATGGGGTCTCTTCCGCCGCCGCCGTCGTTGTCGTCGGACCTCCTCCACCCACATTCCTCTACCAAACCAACCACCCCATCCCAATCCCCAATTGACGAAACTACCCTCCTAAACCTGTTCAAATCCCAACAGAGCCACCTCAACTTCTTCTTCCAGCACCTCGACCTCTCCCAGACCCTCTCCTTCACCCGCACCCTCCTCCGCTCCTCCGGCACCATCTTCTTCTCCGGCGTCGGCAAGTCCGGCTTCGTCGCCAACAAGATCTCCCAGACCCTCGTCTCCCTCGGCATCCGCTCCGCCTTCCTCTCCCCCTCGACGCCCTCCACGGCGACATCGGCATTCTCGCCGCCGCCGACGTCCTCCAAGTCCGGCAACACCGACGAGCTCCTCCGCCTCGTCCCCTGCGCCAAGGCCAAGGGCGCCTTCCTCATCTCCGTCACCTCCGTCGACGGCAATGCCCTCGCCTCCGTCTGCGACATGAACGTGCATTTGCCCTTGGAGAGGGAGCTCTGCCCTTTCGATTTGGCTCCGGTCACCTCCACCGCCATCCAGATGGTCTTCGGCGACACCGTCGCCATCGCCCTCATGGGCGCCAGAAACCTCACCAAGGAGCAATACGCCGCCAATCACCCCGCCGGTCGGATCGGAAAGTCCCTCATCTTCAAGGTGAGAGATGTGATGAAGAAAGAAGAGGAGTTACCGGTGTGCAAGGAAGGGGACATGATAATGGAGCAATTGGTGGAGCTAACAAGCAAGGGATGTGGCTGCTTGCTTGTGATTGACGACGAGCGTCATCTGATAGGGACATTTACCGATGGAGATCTCCGGCGGACTCTCAAGGCGAGCGGAGAGGCCATCTTCAAGCTCACAGTTGGGGAAATGTGCAACAGGAACCCGAGGACGATTGGGCCGGATGCAATGGCTGTCGACGCCATGCAGAAAATGGAAGCTCCTCCTTCCCCTGTGCAGTTCTTGCCTGTCATCGATGACAAGAATGTAGTGATTGGCATTGTCACTCTGCATGGATTGGTTTCGGCTGGCCTTTGA

Protein Analysis

348

Amino Acids

37.27

Weight (kDa)

6.45

Isoelectric Point (pI)

39.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SIS PF01380 121 - 193 2.3e-06 SIS domain
CBS PF00571 223 - 279 7.2e-06 CBS domain
CBS PF00571 291 - 346 4.3e-08 CBS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012365)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 359
AccB1I GGYRCC 3 cut(s) 212, 419, 590
AccBSI CCGCTC 3 cut(s) 204, 294, 846
AccI GTMKAC 2 cut(s) 447, 927
AclWI GGATC 1 cut(s) 650
AcyI GRCGYC 6 cut(s) 231, 317, 356, 420, 591, 930
AfiI CCNNNNNNNGG 3 cut(s) 501, 607, 639
AgeI ACCGGT 1 cut(s) 700
AgsI TTSAA 3 cut(s) 121, 664, 862
AjuI GAANNNNNNNTTGG 2 cut(s) 407, 439
AluBI AGCT 5 cut(s) 385, 508, 745, 865, 950
AluI AGCT 5 cut(s) 385, 508, 745, 865, 950
Alw21I GWGCWC 2 cut(s) 387, 510
Alw26I GTCTC 2 cut(s) 12, 283
AlwI GGATC 1 cut(s) 650
Ama87I CYCGRG 1 cut(s) 895
AoxI GGCC 4 cut(s) 411, 852, 908, 1039
ApeKI GCWGC 1 cut(s) 765
AsiGI ACCGGT 1 cut(s) 700
AspLEI GCGC 3 cut(s) 407, 422, 593
AspS9I GGNCC 2 cut(s) 37, 908
AsuHPI GGTGA 6 cut(s) 178, 430, 526, 595, 620, 679
AvaI CYCGRG 1 cut(s) 895
AvaII GGWCC 1 cut(s) 37
BanI GGYRCC 3 cut(s) 212, 419, 590
BanII GRGCYC 2 cut(s) 387, 510
BarI GAAGNNNNNNTAC 2 cut(s) 681, 713
BbsI GAAGAC 1 cut(s) 550
Bbv12I GWGCWC 2 cut(s) 387, 510
BbvI GCAGC 1 cut(s) 752
BccI CCATC 7 cut(s) 85, 224, 547, 554, 584, 809, 863
BceAI ACGGC 3 cut(s) 7, 342, 466
BcgI CGANNNNNNTGC 4 cut(s) 437, 442, 471, 476
BcoDI GTCTC 2 cut(s) 12, 283
BfoI RGCGCY 2 cut(s) 423, 594
BglII AGATCT 2 cut(s) 261, 820
BisI GCNGC 6 cut(s) 17, 20, 347, 350, 621, 766
BlsI GCNGC 6 cut(s) 18, 21, 348, 351, 622, 767
Bme18I GGWCC 1 cut(s) 37
BmeT110I CYCGRG 1 cut(s) 895
BmgT120I GGNCC 2 cut(s) 37, 908
BmiI GGNNCC 5 cut(s) 214, 421, 528, 592, 893
BmsI GCATC 2 cut(s) 297, 904
BoxI GACNNNNGTC 2 cut(s) 275, 789
BpiI GAAGAC 1 cut(s) 550
BpuEI CTTGAG 1 cut(s) 821
Bsa29I ATCGAT 1 cut(s) 984
BsaBI GATNNNNATC 1 cut(s) 819
BsaHI GRCGYC 6 cut(s) 231, 317, 356, 420, 591, 930
BsaI GGTCTC 1 cut(s) 12
BsaJI CCNNGG 7 cut(s) 283, 324, 408, 414, 495, 606, 896
BsaWI WCCGGW 2 cut(s) 529, 700
BsaXI ACNNNNNCTCC 2 cut(s) 248, 278
Bsc4I CCNNNNNNNGG 3 cut(s) 501, 607, 639
Bse118I RCCGGY 2 cut(s) 635, 700
Bse3DI GCAATG 2 cut(s) 460, 924
Bse8I GATNNNNATC 1 cut(s) 819
BseCI ATCGAT 1 cut(s) 984
BseDI CCNNGG 7 cut(s) 283, 324, 408, 414, 495, 606, 896
BseGI GGATG 5 cut(s) 77, 288, 546, 764, 919
BseJI GATNNNNATC 1 cut(s) 819
BseLI CCNNNNNNNGG 3 cut(s) 501, 607, 639
BseMI GCAATG 2 cut(s) 460, 924
BseRI GAGGAG 6 cut(s) 32, 188, 196, 377, 707, 942
BseXI GCAGC 1 cut(s) 752
BsgI GTGCAG 1 cut(s) 986
Bsh1285I CGRYCG 1 cut(s) 640
BshFI GGCC 4 cut(s) 413, 854, 910, 1041
BshNI GGYRCC 3 cut(s) 212, 419, 590
BshTI ACCGGT 1 cut(s) 700
BshVI ATCGAT 1 cut(s) 984
BsiEI CGRYCG 1 cut(s) 640
BsiHKAI GWGCWC 2 cut(s) 387, 510
BsiHKCI CYCGRG 1 cut(s) 895
BsiSI CCGG 9 cut(s) 210, 228, 243, 369, 530, 636, 701, 826, 911
BslFI GGGAC 4 cut(s) 383, 637, 731, 817
BslI CCNNNNNNNGG 3 cut(s) 501, 607, 639
BsmAI GTCTC 2 cut(s) 12, 283
BsmBI CGTCTC 1 cut(s) 283
BsmFI GGGAC 4 cut(s) 383, 637, 731, 817
BsmI GAATGC 1 cut(s) 338
BsnI GGCC 4 cut(s) 413, 854, 910, 1041
Bso31I GGTCTC 1 cut(s) 12
BsoBI CYCGRG 1 cut(s) 895
Bsp1286I GDGCHC 2 cut(s) 387, 510
Bsp143I GATC 3 cut(s) 261, 642, 820
BspANI GGCC 4 cut(s) 413, 854, 910, 1041
BspDI ATCGAT 1 cut(s) 984
BspLI GGNNCC 5 cut(s) 214, 421, 528, 592, 893
BspPI GGATC 1 cut(s) 650
BspT107I GGYRCC 3 cut(s) 212, 419, 590
BspTNI GGTCTC 1 cut(s) 12
BsrBI CCGCTC 3 cut(s) 204, 294, 846
BsrDI GCAATG 2 cut(s) 460, 924
BsrFI RCCGGY 2 cut(s) 635, 700
BssAI RCCGGY 2 cut(s) 635, 700
BssECI CCNNGG 7 cut(s) 283, 324, 408, 414, 495, 606, 896
BssMI GATC 3 cut(s) 261, 642, 820
BssNI GRCGYC 6 cut(s) 231, 317, 356, 420, 591, 930
BssT1I CCWWGG 4 cut(s) 408, 414, 495, 606
Bst4CI ACNGT 2 cut(s) 571, 871
Bst6I CTCTTC 2 cut(s) 15, 684
BstACI GRCGYC 6 cut(s) 231, 317, 356, 420, 591, 930
BstAPI GCANNNNNTGC 1 cut(s) 973
BstC8I GCNNGC 3 cut(s) 770, 844, 1039
BstDSI CCRYGG 1 cut(s) 324
BstEII GGTNACC 1 cut(s) 532
BstENI CCTNNNNNAGG 2 cut(s) 499, 605
BstF5I GGATG 5 cut(s) 77, 288, 546, 764, 919
BstH2I RGCGCY 2 cut(s) 423, 594
BstHHI GCGC 3 cut(s) 407, 422, 593
BstKTI GATC 3 cut(s) 264, 645, 823
BstMAI GTCTC 2 cut(s) 12, 283
BstMBI GATC 3 cut(s) 261, 642, 820
BstMCI CGRYCG 1 cut(s) 640
BstMWI GCNNNNNNNGC 6 cut(s) 210, 243, 335, 419, 929, 973
BstPAI GACNNNNGTC 2 cut(s) 275, 789
BstPI GGTNACC 1 cut(s) 532
BstV1I GCAGC 1 cut(s) 752
BstV2I GAAGAC 1 cut(s) 550
BstX2I RGATCY 2 cut(s) 261, 820
BstXI CCANNNNNNTGG 1 cut(s) 553
BstYI RGATCY 2 cut(s) 261, 820
Bsu15I ATCGAT 1 cut(s) 984
BsuRI GGCC 4 cut(s) 413, 854, 910, 1041
BsuTUI ATCGAT 1 cut(s) 984
BtgI CCRYGG 1 cut(s) 324
BtgZI GCGATG 1 cut(s) 562
BtsCI GGATG 5 cut(s) 77, 288, 546, 764, 919
Cac8I GCNNGC 3 cut(s) 770, 844, 1039
CfoI GCGC 3 cut(s) 407, 422, 593
Cfr10I RCCGGY 2 cut(s) 635, 700
Cfr13I GGNCC 2 cut(s) 37, 908
ClaI ATCGAT 1 cut(s) 984
CseI GACGC 4 cut(s) 220, 325, 779, 938
CspAI ACCGGT 1 cut(s) 700
CspCI CAANNNNNGTGG 2 cut(s) 742, 777
CviAII CATG 5 cut(s) 478, 586, 721, 934, 1022
DinI GGCGCC 2 cut(s) 421, 592
DpnI GATC 3 cut(s) 263, 644, 822
DpnII GATC 3 cut(s) 261, 642, 820
Eam1104I CTCTTC 2 cut(s) 15, 684
EarI CTCTTC 2 cut(s) 15, 684
EciI GGCGGA 3 cut(s) 286, 380, 844
Ecl136II GAGCTC 2 cut(s) 385, 508
Eco130I CCWWGG 4 cut(s) 408, 414, 495, 606
Eco24I GRGCYC 2 cut(s) 387, 510
Eco31I GGTCTC 1 cut(s) 12
Eco47I GGWCC 1 cut(s) 37
Eco53kI GAGCTC 2 cut(s) 385, 508
Eco88I CYCGRG 1 cut(s) 895
Eco91I GGTNACC 1 cut(s) 532
EcoICRI GAGCTC 2 cut(s) 385, 508
EcoNI CCTNNNNNAGG 2 cut(s) 499, 605
EcoO65I GGTNACC 1 cut(s) 532
EcoT14I CCWWGG 4 cut(s) 408, 414, 495, 606
EcoT38I GRGCYC 2 cut(s) 387, 510
EgeI GGCGCC 2 cut(s) 421, 592
EheI GGCGCC 2 cut(s) 421, 592
ErhI CCWWGG 4 cut(s) 408, 414, 495, 606
Esp3I CGTCTC 1 cut(s) 283
FaeI CATG 5 cut(s) 481, 589, 724, 937, 1025
FaiI YATR 5 cut(s) 479, 587, 722, 935, 1023
FalI AAGNNNNNCTT 4 cut(s) 230, 262, 407, 439
FaqI GGGAC 4 cut(s) 383, 637, 731, 817
FatI CATG 5 cut(s) 477, 585, 720, 933, 1021
FauI CCCGC 2 cut(s) 197, 640
FblI GTMKAC 2 cut(s) 447, 927
Fnu4HI GCNGC 6 cut(s) 17, 20, 347, 350, 621, 766
FokI GGATG 5 cut(s) 64, 275, 533, 771, 926
FriOI GRGCYC 2 cut(s) 387, 510
Fsp4HI GCNGC 6 cut(s) 17, 20, 347, 350, 621, 766
GlaI GCGC 3 cut(s) 406, 421, 592
GluI GCNGC 6 cut(s) 17, 20, 347, 350, 621, 766
HaeII RGCGCY 2 cut(s) 423, 594
HaeIII GGCC 4 cut(s) 413, 854, 910, 1041
HapII CCGG 9 cut(s) 210, 228, 243, 369, 530, 636, 701, 826, 911
HgaI GACGC 4 cut(s) 220, 325, 779, 938
HhaI GCGC 3 cut(s) 407, 422, 593
Hin1I GRCGYC 6 cut(s) 231, 317, 356, 420, 591, 930
Hin1II CATG 5 cut(s) 481, 589, 724, 937, 1025
Hin6I GCGC 3 cut(s) 405, 420, 591
HinP1I GCGC 3 cut(s) 405, 420, 591
HincII GTYRAC 2 cut(s) 448, 928
HindII GTYRAC 2 cut(s) 448, 928
HinfI GANTC 1 cut(s) 832
HpaII CCGG 9 cut(s) 210, 228, 243, 369, 530, 636, 701, 826, 911
HphI GGTGA 6 cut(s) 178, 430, 526, 595, 620, 679
Hpy166II GTNNAC 2 cut(s) 448, 928
Hpy188I TCNGA 4 cut(s) 37, 642, 647, 798
Hpy188III TCNNGA 1 cut(s) 550
Hpy8I GTNNAC 2 cut(s) 448, 928
HpyAV CCTTC 5 cut(s) 193, 310, 433, 707, 966
HpyCH4III ACNGT 2 cut(s) 571, 871
HpyCH4IV ACGT 2 cut(s) 356, 483
HpyCH4V TGCA 7 cut(s) 487, 708, 885, 917, 937, 967, 1021
HpyF10VI GCNNNNNNNGC 6 cut(s) 210, 243, 335, 419, 929, 973
HpySE526I ACGT 2 cut(s) 356, 483
Hsp92I GRCGYC 6 cut(s) 231, 317, 356, 420, 591, 930
Hsp92II CATG 5 cut(s) 481, 589, 724, 937, 1025
HspAI GCGC 3 cut(s) 405, 420, 591
KasI GGCGCC 2 cut(s) 419, 590
Kzo9I GATC 3 cut(s) 261, 642, 820
LmnI GCTCC 9 cut(s) 209, 299, 390, 505, 532, 610, 730, 742, 955
Lsp1109I GCAGC 1 cut(s) 752
LweI GCATC 2 cut(s) 297, 904
MaeII ACGT 2 cut(s) 356, 483
MaeIII GTNAC 4 cut(s) 436, 532, 696, 1012
MalI GATC 3 cut(s) 263, 644, 822
MbiI CCGCTC 3 cut(s) 204, 294, 846
MboI GATC 3 cut(s) 261, 642, 820
MboII GAAGA 9 cut(s) 139, 142, 211, 214, 550, 652, 694, 701, 850
MfeI CAATTG 2 cut(s) 90, 734
MflI RGATCY 2 cut(s) 261, 820
MhlI GDGCHC 2 cut(s) 387, 510
MluCI AATT 2 cut(s) 90, 734
Mly113I GGCGCC 2 cut(s) 420, 591
MlyI GAGTC 1 cut(s) 826
MmeI TCCRAC 2 cut(s) 15, 620
MslI CAYNNNNRTG 3 cut(s) 482, 551, 725
MspI CCGG 9 cut(s) 210, 228, 243, 369, 530, 636, 701, 826, 911
MunI CAATTG 2 cut(s) 90, 734
Mva1269I GAATGC 1 cut(s) 338
MwoI GCNNNNNNNGC 6 cut(s) 210, 243, 335, 419, 929, 973
NarI GGCGCC 2 cut(s) 420, 591
NdeII GATC 3 cut(s) 261, 642, 820
NlaIII CATG 5 cut(s) 481, 589, 724, 937, 1025
NlaIV GGNNCC 5 cut(s) 214, 421, 528, 592, 893
NmeAIII GCCGAG 1 cut(s) 264
NmuCI GTSAC 3 cut(s) 436, 532, 1012
PcsI WCGNNNNNNNCGW 2 cut(s) 350, 567
PctI GAATGC 1 cut(s) 338
PflFI GACNNNGTC 1 cut(s) 569
PinAI ACCGGT 1 cut(s) 700
PkrI GCNGC 6 cut(s) 18, 21, 348, 351, 622, 767
PleI GAGTC 1 cut(s) 826
PluTI GGCGCC 2 cut(s) 423, 594
PpsI GAGTC 1 cut(s) 826
PshAI GACNNNNGTC 2 cut(s) 275, 789
Psp124BI GAGCTC 2 cut(s) 387, 510
PspEI GGTNACC 1 cut(s) 532
PspN4I GGNNCC 5 cut(s) 214, 421, 528, 592, 893
PspPI GGNCC 2 cut(s) 37, 908
PsuI RGATCY 2 cut(s) 261, 820
PsyI GACNNNGTC 1 cut(s) 569
RseI CAYNNNNRTG 3 cut(s) 482, 551, 725
SacI GAGCTC 2 cut(s) 387, 510
SalI GTCGAC 2 cut(s) 446, 926
SatI GCNGC 6 cut(s) 17, 20, 347, 350, 621, 766
Sau3AI GATC 3 cut(s) 261, 642, 820
Sau96I GGNCC 2 cut(s) 37, 908
SchI GAGTC 1 cut(s) 826
SduI GDGCHC 2 cut(s) 387, 510
SfaNI GCATC 2 cut(s) 297, 904
SfoI GGCGCC 2 cut(s) 421, 592
SgrDI CGTCGACG 1 cut(s) 446
SinI GGWCC 1 cut(s) 37
SmiMI CAYNNNNRTG 3 cut(s) 482, 551, 725
SmlI CTYRAG 1 cut(s) 836
SmoI CTYRAG 1 cut(s) 836
Sse9I AATT 2 cut(s) 90, 734
SspDI GGCGCC 2 cut(s) 419, 590
SstI GAGCTC 2 cut(s) 387, 510
StyI CCWWGG 4 cut(s) 408, 414, 495, 606
TaaI ACNGT 2 cut(s) 571, 871
TaiI ACGT 2 cut(s) 359, 486
TaqI TCGA 6 cut(s) 162, 314, 447, 519, 927, 984
TasI AATT 2 cut(s) 90, 734
TauI GCSGC 5 cut(s) 19, 22, 349, 352, 623
TseFI GTSAC 3 cut(s) 436, 532, 1012
TseI GCWGC 1 cut(s) 765
Tsp45I GTSAC 3 cut(s) 436, 532, 1012
TspDTI ATGAA 2 cut(s) 494, 695
TspGWI ACGGA 3 cut(s) 424, 433, 457
Tth111I GACNNNGTC 1 cut(s) 569
VpaK11BI GGWCC 1 cut(s) 37
XagI CCTNNNNNAGG 2 cut(s) 499, 605
XcmI CCANNNNNNNNNTGG 2 cut(s) 583, 940
XmiI GTMKAC 2 cut(s) 447, 927
ZraI GACGTC 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.