FvH4_2g21300

Belongs to the SIS family. GutQ KpsF subfamily

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
17724680 .. 17726371
1692 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g21300.t1

Sequence Viewer

Length: 1038 bp
ATGGGGTCTCTTCCGCCGTCGTCGTCGTCGGACCTCCACCTCCACCCACATTCTTCCTCCAAATCCGCAATTGACGAAACTACCCTCCTAAACCTCTTCAAATCCCAGCAGAGCCACCTCAACTTCTTCTTCCAGCACCTGGACCTCTCTCAGACCCTCGCCTTCACCACCACCCTCCTCCACTCCTCCGGCACCATCTTCTTCTCCGGCGTCGGCAAGTCCGGCTTCGTCGCCAACAAGATCTCCCAGACCCTCGTCTCCCTCGGCATCCGCTCCTCCTTCCTCTCCCCCCTCGACGCCCTCCACGGCGACATCGGCATCCTCGCCGCCGATGACGTCCTCGTCCTCTTCAGCAAGTCCGGCAACACCGAAGAGCTCCTCCGCCTCGTCCCCTGCGCCAAGGCCAAGCGCGCCTTCCTCATCTCCGTCACCTCCGTCGCCGGCAACGCCCTCGCCTCCGTCTGCGACATGAACGTGCATTTGCCGCTGGAGCGCGAGCTCTGCCCCTTCGATCTGGCTCCGGTCACCTCCACCGCCATCCAGATGGTCTTCGGCGACACCGTCGCCATCGCCCTCATGGGCGCCAGAAACCTCACCAAGGAGCAGTACGCCGCCAATCACCCCGCCGGCCGCATCGGCAAGTCTCTCATCTTCAAGGTGAGAGATGTGATGAAGAAAGAAGAGGAATTACCGGTGTGCAAGGAAGGGGACATGATAATGGAGCAATTGGTGGAGCTAACAAGCAAGGGATGCGGCTGCTTGCTTGTGATCGACGATGATCGTCACCTGATCGGCACATTTACCGATGGAGATCTCCGGCGCACTCTCAAGGCCAGCGGAGAGGCCATCTTCAAGCTCACTGTTGGGGAAATGTGCAACAGGAACCCAAGGACTATCGGGCCGGACGCAATGGCCGTCGACGCAATGCAGAAGATGGAAGCTCCTCCTTCCCCTGTGCAGTTCTTGCCTGTCGTCGATGAGCAGAATGTTGTGATTGGCATTGTTACTCTGCATGGATTGGTTTCGGCTGGCCTTTGA

Protein Analysis

346

Amino Acids

37.06

Weight (kDa)

5.87

Isoelectric Point (pI)

34.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SIS PF01380 60 - 190 1.3e-17 SIS domain
CBS PF00571 220 - 276 3.6e-06 CBS domain
CBS PF00571 288 - 343 1.5e-08 CBS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012365)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 341
AatII GACGTC 1 cut(s) 339
AccB1I GGYRCC 2 cut(s) 191, 581
AccB7I CCANNNNNTGG 1 cut(s) 139
AccBSI CCGCTC 1 cut(s) 273
AccI GTMKAC 1 cut(s) 918
AccII CGCG 2 cut(s) 411, 495
AcoI YGGCCR 2 cut(s) 628, 912
AcuI CTGAAG 1 cut(s) 334
AcyI GRCGYC 4 cut(s) 210, 297, 336, 582
AfaI GTAC 1 cut(s) 608
AfiI CCNNNNNNNGG 2 cut(s) 139, 598
AgeI ACCGGT 1 cut(s) 691
AgsI TTSAA 3 cut(s) 100, 655, 853
AjnI CCWGG 1 cut(s) 138
AjuI GAANNNNNNNTTGG 2 cut(s) 398, 430
AluBI AGCT 5 cut(s) 376, 499, 736, 856, 941
AluI AGCT 5 cut(s) 376, 499, 736, 856, 941
Alw21I GWGCWC 2 cut(s) 378, 501
Alw26I GTCTC 3 cut(s) 12, 262, 648
AlwNI CAGNNNCTG 1 cut(s) 139
AoxI GGCC 7 cut(s) 402, 628, 831, 843, 899, 912, 1030
ApeKI GCWGC 1 cut(s) 756
AsiGI ACCGGT 1 cut(s) 691
AspLEI GCGC 6 cut(s) 398, 411, 413, 495, 584, 822
AspS9I GGNCC 3 cut(s) 31, 142, 899
AsuHPI GGTGA 7 cut(s) 157, 421, 517, 586, 611, 670, 776
AvaII GGWCC 2 cut(s) 31, 142
BanI GGYRCC 2 cut(s) 191, 581
BanII GRGCYC 2 cut(s) 378, 501
BarI GAAGNNNNNNTAC 2 cut(s) 672, 704
BbsI GAAGAC 1 cut(s) 541
Bbv12I GWGCWC 2 cut(s) 378, 501
BbvI GCAGC 1 cut(s) 743
BccI CCATC 7 cut(s) 203, 538, 545, 575, 800, 854, 928
BceAI ACGGC 2 cut(s) 322, 899
BcgI CGANNNNNNTGC 2 cut(s) 433, 467
BciT130I CCWGG 1 cut(s) 140
BcoDI GTCTC 3 cut(s) 12, 262, 648
BfoI RGCGCY 1 cut(s) 585
BglI GCCNNNNNGGC 1 cut(s) 636
BglII AGATCT 2 cut(s) 240, 811
BisI GCNGC 6 cut(s) 327, 485, 612, 631, 754, 757
BlsI GCNGC 6 cut(s) 328, 486, 613, 632, 755, 758
Bme1390I CCNGG 1 cut(s) 140
Bme18I GGWCC 2 cut(s) 31, 142
BmgT120I GGNCC 3 cut(s) 31, 142, 899
BmiI GGNNCC 4 cut(s) 193, 519, 583, 884
BmrFI CCNGG 1 cut(s) 140
BmsI GCATC 4 cut(s) 276, 327, 642, 740
BoxI GACNNNNGTC 1 cut(s) 254
BpiI GAAGAC 1 cut(s) 541
BpmI CTGGAG 1 cut(s) 509
BpuEI CTTGAG 1 cut(s) 812
BsaBI GATNNNNATC 1 cut(s) 810
BsaHI GRCGYC 4 cut(s) 210, 297, 336, 582
BsaI GGTCTC 1 cut(s) 12
BsaJI CCNNGG 5 cut(s) 262, 304, 399, 597, 887
BsaWI WCCGGW 2 cut(s) 520, 691
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 598
Bse118I RCCGGY 3 cut(s) 440, 626, 691
Bse3DI GCAATG 2 cut(s) 915, 930
Bse8I GATNNNNATC 1 cut(s) 810
BseBI CCWGG 1 cut(s) 140
BseDI CCNNGG 5 cut(s) 262, 304, 399, 597, 887
BseGI GGATG 4 cut(s) 267, 318, 537, 755
BseJI GATNNNNATC 1 cut(s) 810
BseLI CCNNNNNNNGG 2 cut(s) 139, 598
BseMI GCAATG 2 cut(s) 915, 930
BseMII CTCAG 1 cut(s) 164
BsePI GCGCGC 1 cut(s) 409
BseRI GAGGAG 5 cut(s) 167, 175, 265, 368, 933
BseX3I CGGCCG 1 cut(s) 628
BseXI GCAGC 1 cut(s) 743
BseYI CCCAGC 1 cut(s) 105
BsgI GTGCAG 1 cut(s) 977
Bsh1236I CGCG 2 cut(s) 411, 495
Bsh1285I CGRYCG 1 cut(s) 631
BshFI GGCC 7 cut(s) 404, 630, 833, 845, 901, 914, 1032
BshNI GGYRCC 2 cut(s) 191, 581
BshTI ACCGGT 1 cut(s) 691
BsiEI CGRYCG 1 cut(s) 631
BsiHKAI GWGCWC 2 cut(s) 378, 501
BslFI GGGAC 2 cut(s) 374, 722
BslI CCNNNNNNNGG 2 cut(s) 139, 598
BsmAI GTCTC 3 cut(s) 12, 262, 648
BsmBI CGTCTC 1 cut(s) 262
BsmFI GGGAC 2 cut(s) 374, 722
BsnI GGCC 7 cut(s) 404, 630, 833, 845, 901, 914, 1032
Bso31I GGTCTC 1 cut(s) 12
Bsp1286I GDGCHC 2 cut(s) 378, 501
Bsp143I GATC 6 cut(s) 240, 511, 768, 778, 789, 811
BspANI GGCC 7 cut(s) 404, 630, 833, 845, 901, 914, 1032
BspCNI CTCAG 1 cut(s) 163
BspFNI CGCG 2 cut(s) 411, 495
BspLI GGNNCC 4 cut(s) 193, 519, 583, 884
BspQI GCTCTTC 1 cut(s) 366
BspT107I GGYRCC 2 cut(s) 191, 581
BspTNI GGTCTC 1 cut(s) 12
BsrBI CCGCTC 1 cut(s) 273
BsrDI GCAATG 2 cut(s) 915, 930
BsrFI RCCGGY 3 cut(s) 440, 626, 691
BssAI RCCGGY 3 cut(s) 440, 626, 691
BssECI CCNNGG 5 cut(s) 262, 304, 399, 597, 887
BssHII GCGCGC 1 cut(s) 409
BssMI GATC 6 cut(s) 240, 511, 768, 778, 789, 811
BssNI GRCGYC 4 cut(s) 210, 297, 336, 582
BssT1I CCWWGG 3 cut(s) 399, 597, 887
Bst2UI CCWGG 1 cut(s) 140
Bst4CI ACNGT 2 cut(s) 562, 862
Bst6I CTCTTC 5 cut(s) 15, 101, 353, 366, 675
BstACI GRCGYC 4 cut(s) 210, 297, 336, 582
BstAPI GCANNNNNTGC 2 cut(s) 750, 964
BstC8I GCNNGC 7 cut(s) 411, 442, 497, 628, 761, 835, 1030
BstDEI CTNAG 1 cut(s) 150
BstDSI CCRYGG 1 cut(s) 304
BstEII GGTNACC 1 cut(s) 523
BstENI CCTNNNNNAGG 1 cut(s) 596
BstF5I GGATG 4 cut(s) 267, 318, 537, 755
BstFNI CGCG 2 cut(s) 411, 495
BstH2I RGCGCY 1 cut(s) 585
BstHHI GCGC 6 cut(s) 398, 411, 413, 495, 584, 822
BstKTI GATC 6 cut(s) 243, 514, 771, 781, 792, 814
BstMAI GTCTC 3 cut(s) 12, 262, 648
BstMBI GATC 6 cut(s) 240, 511, 768, 778, 789, 811
BstMCI CGRYCG 1 cut(s) 631
BstNI CCWGG 1 cut(s) 140
BstPAI GACNNNNGTC 1 cut(s) 254
BstPI GGTNACC 1 cut(s) 523
BstSCI CCNGG 1 cut(s) 138
BstUI CGCG 2 cut(s) 411, 495
BstV1I GCAGC 1 cut(s) 743
BstV2I GAAGAC 1 cut(s) 541
BstX2I RGATCY 2 cut(s) 240, 811
BstXI CCANNNNNNTGG 1 cut(s) 544
BstYI RGATCY 2 cut(s) 240, 811
BstZI CGGCCG 1 cut(s) 628
BsuRI GGCC 7 cut(s) 404, 630, 833, 845, 901, 914, 1032
BtgI CCRYGG 1 cut(s) 304
BtgZI GCGATG 1 cut(s) 553
BtsCI GGATG 4 cut(s) 267, 318, 537, 755
BtsIMutI CAGTG 1 cut(s) 858
Cac8I GCNNGC 7 cut(s) 411, 442, 497, 628, 761, 835, 1030
CaiI CAGNNNCTG 1 cut(s) 139
CfoI GCGC 6 cut(s) 398, 411, 413, 495, 584, 822
Cfr10I RCCGGY 3 cut(s) 440, 626, 691
Cfr13I GGNCC 3 cut(s) 31, 142, 899
CseI GACGC 4 cut(s) 199, 305, 914, 929
Csp6I GTAC 1 cut(s) 607
CspAI ACCGGT 1 cut(s) 691
CviAII CATG 4 cut(s) 469, 577, 712, 1013
CviQI GTAC 1 cut(s) 607
DdeI CTNAG 1 cut(s) 150
DinI GGCGCC 1 cut(s) 583
DpnI GATC 6 cut(s) 242, 513, 770, 780, 791, 813
DpnII GATC 6 cut(s) 240, 511, 768, 778, 789, 811
DrdI GACNNNNNNGTC 1 cut(s) 341
DseDI GACNNNNNNGTC 1 cut(s) 341
EaeI YGGCCR 2 cut(s) 628, 912
EagI CGGCCG 1 cut(s) 628
Eam1104I CTCTTC 5 cut(s) 15, 101, 353, 366, 675
EarI CTCTTC 5 cut(s) 15, 101, 353, 366, 675
EciI GGCGGA 1 cut(s) 371
Ecl136II GAGCTC 2 cut(s) 376, 499
EclXI CGGCCG 1 cut(s) 628
Eco130I CCWWGG 3 cut(s) 399, 597, 887
Eco24I GRGCYC 2 cut(s) 378, 501
Eco31I GGTCTC 1 cut(s) 12
Eco47I GGWCC 2 cut(s) 31, 142
Eco52I CGGCCG 1 cut(s) 628
Eco53kI GAGCTC 2 cut(s) 376, 499
Eco57I CTGAAG 1 cut(s) 334
Eco91I GGTNACC 1 cut(s) 523
EcoICRI GAGCTC 2 cut(s) 376, 499
EcoNI CCTNNNNNAGG 1 cut(s) 596
EcoO65I GGTNACC 1 cut(s) 523
EcoRII CCWGG 1 cut(s) 138
EcoT14I CCWWGG 3 cut(s) 399, 597, 887
EcoT38I GRGCYC 2 cut(s) 378, 501
EgeI GGCGCC 1 cut(s) 583
EheI GGCGCC 1 cut(s) 583
ErhI CCWWGG 3 cut(s) 399, 597, 887
Esp3I CGTCTC 1 cut(s) 262
FaeI CATG 4 cut(s) 472, 580, 715, 1016
FaiI YATR 4 cut(s) 470, 578, 713, 1014
FalI AAGNNNNNCTT 4 cut(s) 209, 241, 398, 430
FaqI GGGAC 2 cut(s) 374, 722
FatI CATG 4 cut(s) 468, 576, 711, 1012
FauI CCCGC 1 cut(s) 631
FblI GTMKAC 1 cut(s) 918
Fnu4HI GCNGC 6 cut(s) 327, 485, 612, 631, 754, 757
FokI GGATG 4 cut(s) 254, 305, 524, 762
FriOI GRGCYC 2 cut(s) 378, 501
Fsp4HI GCNGC 6 cut(s) 327, 485, 612, 631, 754, 757
GlaI GCGC 6 cut(s) 397, 410, 412, 494, 583, 821
GluI GCNGC 6 cut(s) 327, 485, 612, 631, 754, 757
GsaI CCCAGC 1 cut(s) 109
GsuI CTGGAG 1 cut(s) 509
HaeII RGCGCY 1 cut(s) 585
HaeIII GGCC 7 cut(s) 404, 630, 833, 845, 901, 914, 1032
HgaI GACGC 4 cut(s) 199, 305, 914, 929
HhaI GCGC 6 cut(s) 398, 411, 413, 495, 584, 822
Hin1I GRCGYC 4 cut(s) 210, 297, 336, 582
Hin1II CATG 4 cut(s) 472, 580, 715, 1016
Hin6I GCGC 6 cut(s) 396, 409, 411, 493, 582, 820
HinP1I GCGC 6 cut(s) 396, 409, 411, 493, 582, 820
HincII GTYRAC 1 cut(s) 919
HindII GTYRAC 1 cut(s) 919
HphI GGTGA 7 cut(s) 157, 421, 517, 586, 611, 670, 776
Hpy166II GTNNAC 1 cut(s) 919
Hpy188I TCNGA 2 cut(s) 31, 153
Hpy188III TCNNGA 1 cut(s) 541
Hpy8I GTNNAC 1 cut(s) 919
HpyAV CCTTC 6 cut(s) 172, 289, 424, 517, 698, 957
HpyCH4III ACNGT 2 cut(s) 562, 862
HpyCH4IV ACGT 2 cut(s) 336, 474
HpyCH4V TGCA 6 cut(s) 478, 699, 876, 928, 958, 1012
HpyF3I CTNAG 1 cut(s) 150
HpySE526I ACGT 2 cut(s) 336, 474
Hsp92I GRCGYC 4 cut(s) 210, 297, 336, 582
Hsp92II CATG 4 cut(s) 472, 580, 715, 1016
HspAI GCGC 6 cut(s) 396, 409, 411, 493, 582, 820
KasI GGCGCC 1 cut(s) 581
KroI GCCGGC 2 cut(s) 440, 626
KroNI GCCGGC 2 cut(s) 442, 628
Kzo9I GATC 6 cut(s) 240, 511, 768, 778, 789, 811
LguI GCTCTTC 1 cut(s) 366
LmnI GCTCC 8 cut(s) 278, 381, 490, 523, 601, 721, 733, 946
Lsp1109I GCAGC 1 cut(s) 743
LweI GCATC 4 cut(s) 276, 327, 642, 740
MaeII ACGT 2 cut(s) 336, 474
MaeIII GTNAC 4 cut(s) 427, 523, 782, 1003
MalI GATC 6 cut(s) 242, 513, 770, 780, 791, 813
MbiI CCGCTC 1 cut(s) 273
MboI GATC 6 cut(s) 240, 511, 768, 778, 789, 811
MfeI CAATTG 2 cut(s) 69, 725
MflI RGATCY 2 cut(s) 240, 811
MhlI GDGCHC 2 cut(s) 378, 501
MluCI AATT 3 cut(s) 69, 686, 725
Mly113I GGCGCC 1 cut(s) 582
MmeI TCCRAC 1 cut(s) 9
MroNI GCCGGC 2 cut(s) 440, 626
MslI CAYNNNNRTG 3 cut(s) 473, 542, 716
MspA1I CMGCKG 2 cut(s) 487, 837
MspR9I CCNGG 1 cut(s) 140
MunI CAATTG 2 cut(s) 69, 725
MvaI CCWGG 1 cut(s) 140
MvnI CGCG 2 cut(s) 411, 495
NaeI GCCGGC 2 cut(s) 442, 628
NarI GGCGCC 1 cut(s) 582
NdeII GATC 6 cut(s) 240, 511, 768, 778, 789, 811
NgoMIV GCCGGC 2 cut(s) 440, 626
NlaIII CATG 4 cut(s) 472, 580, 715, 1016
NlaIV GGNNCC 4 cut(s) 193, 519, 583, 884
NmeAIII GCCGAG 1 cut(s) 243
NmuCI GTSAC 3 cut(s) 427, 523, 782
PauI GCGCGC 1 cut(s) 409
PciSI GCTCTTC 1 cut(s) 366
PcsI WCGNNNNNNNCGW 2 cut(s) 558, 912
PdiI GCCGGC 2 cut(s) 442, 628
PflFI GACNNNGTC 1 cut(s) 560
PflMI CCANNNNNTGG 1 cut(s) 139
PinAI ACCGGT 1 cut(s) 691
PkrI GCNGC 6 cut(s) 328, 486, 613, 632, 755, 758
PluTI GGCGCC 1 cut(s) 585
PshAI GACNNNNGTC 1 cut(s) 254
Psp124BI GAGCTC 2 cut(s) 378, 501
Psp6I CCWGG 1 cut(s) 138
PspEI GGTNACC 1 cut(s) 523
PspFI CCCAGC 1 cut(s) 105
PspGI CCWGG 1 cut(s) 138
PspN4I GGNNCC 4 cut(s) 193, 519, 583, 884
PspPI GGNCC 3 cut(s) 31, 142, 899
PstNI CAGNNNCTG 1 cut(s) 139
PsuI RGATCY 2 cut(s) 240, 811
PsyI GACNNNGTC 1 cut(s) 560
PteI GCGCGC 1 cut(s) 409
RsaI GTAC 1 cut(s) 608
RsaNI GTAC 1 cut(s) 607
RseI CAYNNNNRTG 3 cut(s) 473, 542, 716
SacI GAGCTC 2 cut(s) 378, 501
SalI GTCGAC 1 cut(s) 917
SapI GCTCTTC 1 cut(s) 366
SatI GCNGC 6 cut(s) 327, 485, 612, 631, 754, 757
Sau3AI GATC 6 cut(s) 240, 511, 768, 778, 789, 811
Sau96I GGNCC 3 cut(s) 31, 142, 899
ScrFI CCNGG 1 cut(s) 140
SduI GDGCHC 2 cut(s) 378, 501
SfaNI GCATC 4 cut(s) 276, 327, 642, 740
SfoI GGCGCC 1 cut(s) 583
SgrDI CGTCGACG 1 cut(s) 917
SinI GGWCC 2 cut(s) 31, 142
SmiMI CAYNNNNRTG 3 cut(s) 473, 542, 716
SmlI CTYRAG 1 cut(s) 827
SmoI CTYRAG 1 cut(s) 827
Sse9I AATT 3 cut(s) 69, 686, 725
SspDI GGCGCC 1 cut(s) 581
SstI GAGCTC 2 cut(s) 378, 501
StyD4I CCNGG 1 cut(s) 138
StyI CCWWGG 3 cut(s) 399, 597, 887
TaaI ACNGT 2 cut(s) 562, 862
TaiI ACGT 2 cut(s) 339, 477
TaqI TCGA 5 cut(s) 294, 510, 771, 918, 975
TasI AATT 3 cut(s) 69, 686, 725
TauI GCSGC 5 cut(s) 329, 487, 614, 633, 756
TscAI CASTG 1 cut(s) 865
TseFI GTSAC 3 cut(s) 427, 523, 782
TseI GCWGC 1 cut(s) 756
Tsp45I GTSAC 3 cut(s) 427, 523, 782
TspDTI ATGAA 2 cut(s) 485, 686
TspGWI ACGGA 3 cut(s) 415, 424, 448
TspRI CASTG 1 cut(s) 865
Tth111I GACNNNGTC 1 cut(s) 560
Van91I CCANNNNNTGG 1 cut(s) 139
VpaK11BI GGWCC 2 cut(s) 31, 142
XagI CCTNNNNNAGG 1 cut(s) 596
XcmI CCANNNNNNNNNTGG 1 cut(s) 574
XmiI GTMKAC 1 cut(s) 918
ZraI GACGTC 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.