RLG00000012458

Belongs to the SIS family. GutQ KpsF subfamily

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
18994458 .. 18995631
1174 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012458

Sequence Viewer

Length: 1062 bp
ATGGGGTCTCTTCCGCCGCCGCCGTCGTCGTCGTCGGACCTCCTCCTCCACCCACATTCCTCTACCAAACCAACCACCCCATCCCAATCCCCAATTGACGAAACTACCCTCCTAAACCTGTTCAAATCCCAACAGAGCCACCTCAACTTCTTCTTCCAGCACCTCGACCTCTCCCAGACCCTCTCCTTCACCCGCACCCTCCTCCGCTCCTCCGGCACCATCTTCTTCTCCGGCGTCGGCAAGTCCGGCTTCGTCGCCAACAAGATCTCCCAGACCCTCGTCTCCCTCGGCATCCGCTCCGCCTTCCTCTCCCCCCTCGACGCCCTCCACGGCGACATCGGCATTCTCGCCGCCGCCGACGTCCTCGTCCTCTTCAGCAAGTCCGGCAACACCGACGAGCTCCTCCGCCTCGTCCCCTGCGCCAAGGCCAAGGGCGCCTTCCTCATCTCCGTCACCTCCGTCGACGGCAATGCCCTCGCCTCCGTCTGCGACATGAACGTGCATTTGCCCTTGGAGAGGGAGCTCTGCCCCTTCGATTTGGCTCCGGTCACCTCCACCGCCATCCAGATGGTCTTCGGCGACACCGTCGCCATCGCCCTCATGGGCGCCAGAAACCTCACCAAGGAGCAATACGCCGCCAATCACCCCGCCGGTCGGATCGGAAAGTCCCTCATCTTCAAGGTGAGAGATGTGATGAAGAAAGAAGAGGAGTTACCGGTGTGCAAGGAAGGGGACATGATAATGGAGCAATTGGTGGAGCTAACAAGCAAGGGATGTGGCTGCTTGCTTGTGATCGACGACGAGCATCATCTGATAGGGACATTTACCGATGGAGATCTCCGGCGGACTCTCAAGGCGAGCGGAGAGGCCATCTTCAAGCTCACAGTTGGGGAAATGTGCAACAGGAACCCGAGGAGAATTGGGCCGGATGCAATGGCTGTCGACGCCATGCAGAAAATGGAAGCTCCTCCTTCCCCTGTGCAGTTTTTGCCCGTCATCGATCAGAAGAATGTAGTGATTGGCATTGTCACTCTGCATGGATTGGTTTCGGCTGGCCTTTGA

Protein Analysis

354

Amino Acids

37.9

Weight (kDa)

6.2

Isoelectric Point (pI)

37.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SIS PF01380 68 - 198 6.6e-18 SIS domain
CBS PF00571 228 - 284 5.3e-06 CBS domain
CBS PF00571 296 - 351 4.3e-06 CBS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012365)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 365
AatII GACGTC 1 cut(s) 363
AccB1I GGYRCC 3 cut(s) 215, 434, 605
AccBSI CCGCTC 3 cut(s) 207, 297, 861
AccI GTMKAC 2 cut(s) 462, 942
AclWI GGATC 1 cut(s) 665
AcuI CTGAAG 1 cut(s) 358
AcyI GRCGYC 6 cut(s) 234, 321, 360, 435, 606, 945
AfiI CCNNNNNNNGG 3 cut(s) 516, 622, 654
AgeI ACCGGT 1 cut(s) 715
AgsI TTSAA 3 cut(s) 124, 679, 877
AjuI GAANNNNNNNTTGG 2 cut(s) 422, 454
AluBI AGCT 5 cut(s) 400, 523, 760, 880, 965
AluI AGCT 5 cut(s) 400, 523, 760, 880, 965
Alw21I GWGCWC 2 cut(s) 402, 525
Alw26I GTCTC 2 cut(s) 12, 286
AlwI GGATC 1 cut(s) 665
Ama87I CYCGRG 1 cut(s) 910
AoxI GGCC 4 cut(s) 426, 867, 923, 1054
ApeKI GCWGC 1 cut(s) 780
AsiGI ACCGGT 1 cut(s) 715
AspLEI GCGC 3 cut(s) 422, 437, 608
AspS9I GGNCC 2 cut(s) 37, 923
AsuHPI GGTGA 6 cut(s) 181, 445, 541, 610, 635, 694
AvaI CYCGRG 1 cut(s) 910
AvaII GGWCC 1 cut(s) 37
BanI GGYRCC 3 cut(s) 215, 434, 605
BanII GRGCYC 2 cut(s) 402, 525
BarI GAAGNNNNNNTAC 2 cut(s) 696, 728
BbsI GAAGAC 1 cut(s) 565
Bbv12I GWGCWC 2 cut(s) 402, 525
BbvI GCAGC 1 cut(s) 767
BccI CCATC 7 cut(s) 88, 227, 562, 569, 599, 824, 878
BceAI ACGGC 3 cut(s) 7, 346, 481
BcgI CGANNNNNNTGC 4 cut(s) 452, 457, 486, 491
BcoDI GTCTC 2 cut(s) 12, 286
BfoI RGCGCY 2 cut(s) 438, 609
BglII AGATCT 2 cut(s) 264, 835
BisI GCNGC 6 cut(s) 17, 20, 351, 354, 636, 781
BlsI GCNGC 6 cut(s) 18, 21, 352, 355, 637, 782
Bme18I GGWCC 1 cut(s) 37
BmeT110I CYCGRG 1 cut(s) 910
BmgT120I GGNCC 2 cut(s) 37, 923
BmiI GGNNCC 5 cut(s) 217, 436, 543, 607, 908
BmsI GCATC 3 cut(s) 300, 814, 919
BoxI GACNNNNGTC 1 cut(s) 278
BpiI GAAGAC 1 cut(s) 565
BpuEI CTTGAG 1 cut(s) 836
Bsa29I ATCGAT 1 cut(s) 999
BsaBI GATNNNNATC 1 cut(s) 834
BsaHI GRCGYC 6 cut(s) 234, 321, 360, 435, 606, 945
BsaI GGTCTC 1 cut(s) 12
BsaJI CCNNGG 7 cut(s) 286, 328, 423, 429, 510, 621, 911
BsaWI WCCGGW 2 cut(s) 544, 715
BsaXI ACNNNNNCTCC 2 cut(s) 251, 281
Bsc4I CCNNNNNNNGG 3 cut(s) 516, 622, 654
Bse118I RCCGGY 2 cut(s) 650, 715
Bse3DI GCAATG 2 cut(s) 475, 939
Bse8I GATNNNNATC 1 cut(s) 834
BseCI ATCGAT 1 cut(s) 999
BseDI CCNNGG 7 cut(s) 286, 328, 423, 429, 510, 621, 911
BseGI GGATG 5 cut(s) 80, 291, 561, 779, 934
BseJI GATNNNNATC 1 cut(s) 834
BseLI CCNNNNNNNGG 3 cut(s) 516, 622, 654
BseMI GCAATG 2 cut(s) 475, 939
BseRI GAGGAG 8 cut(s) 32, 35, 191, 199, 392, 722, 928, 957
BseXI GCAGC 1 cut(s) 767
BsgI GTGCAG 1 cut(s) 1001
Bsh1285I CGRYCG 1 cut(s) 655
BshFI GGCC 4 cut(s) 428, 869, 925, 1056
BshNI GGYRCC 3 cut(s) 215, 434, 605
BshTI ACCGGT 1 cut(s) 715
BshVI ATCGAT 1 cut(s) 999
BsiEI CGRYCG 1 cut(s) 655
BsiHKAI GWGCWC 2 cut(s) 402, 525
BsiHKCI CYCGRG 1 cut(s) 910
BsiSI CCGG 9 cut(s) 213, 231, 246, 384, 545, 651, 716, 841, 926
BslFI GGGAC 4 cut(s) 398, 652, 746, 832
BslI CCNNNNNNNGG 3 cut(s) 516, 622, 654
BsmAI GTCTC 2 cut(s) 12, 286
BsmBI CGTCTC 1 cut(s) 286
BsmFI GGGAC 4 cut(s) 398, 652, 746, 832
BsmI GAATGC 1 cut(s) 342
BsnI GGCC 4 cut(s) 428, 869, 925, 1056
Bso31I GGTCTC 1 cut(s) 12
BsoBI CYCGRG 1 cut(s) 910
Bsp1286I GDGCHC 2 cut(s) 402, 525
Bsp143I GATC 5 cut(s) 264, 657, 792, 835, 1000
BspANI GGCC 4 cut(s) 428, 869, 925, 1056
BspDI ATCGAT 1 cut(s) 999
BspLI GGNNCC 5 cut(s) 217, 436, 543, 607, 908
BspPI GGATC 1 cut(s) 665
BspT107I GGYRCC 3 cut(s) 215, 434, 605
BspTNI GGTCTC 1 cut(s) 12
BsrBI CCGCTC 3 cut(s) 207, 297, 861
BsrDI GCAATG 2 cut(s) 475, 939
BsrFI RCCGGY 2 cut(s) 650, 715
BssAI RCCGGY 2 cut(s) 650, 715
BssECI CCNNGG 7 cut(s) 286, 328, 423, 429, 510, 621, 911
BssMI GATC 5 cut(s) 264, 657, 792, 835, 1000
BssNI GRCGYC 6 cut(s) 234, 321, 360, 435, 606, 945
BssT1I CCWWGG 4 cut(s) 423, 429, 510, 621
Bst4CI ACNGT 2 cut(s) 586, 886
Bst6I CTCTTC 3 cut(s) 15, 377, 699
BstACI GRCGYC 6 cut(s) 234, 321, 360, 435, 606, 945
BstAPI GCANNNNNTGC 1 cut(s) 988
BstC8I GCNNGC 3 cut(s) 785, 859, 1054
BstDSI CCRYGG 1 cut(s) 328
BstEII GGTNACC 1 cut(s) 547
BstENI CCTNNNNNAGG 2 cut(s) 514, 620
BstF5I GGATG 5 cut(s) 80, 291, 561, 779, 934
BstH2I RGCGCY 2 cut(s) 438, 609
BstHHI GCGC 3 cut(s) 422, 437, 608
BstKTI GATC 5 cut(s) 267, 660, 795, 838, 1003
BstMAI GTCTC 2 cut(s) 12, 286
BstMBI GATC 5 cut(s) 264, 657, 792, 835, 1000
BstMCI CGRYCG 1 cut(s) 655
BstMWI GCNNNNNNNGC 7 cut(s) 213, 246, 339, 384, 434, 944, 988
BstPAI GACNNNNGTC 1 cut(s) 278
BstPI GGTNACC 1 cut(s) 547
BstV1I GCAGC 1 cut(s) 767
BstV2I GAAGAC 1 cut(s) 565
BstX2I RGATCY 2 cut(s) 264, 835
BstXI CCANNNNNNTGG 1 cut(s) 568
BstYI RGATCY 2 cut(s) 264, 835
Bsu15I ATCGAT 1 cut(s) 999
BsuRI GGCC 4 cut(s) 428, 869, 925, 1056
BsuTUI ATCGAT 1 cut(s) 999
BtgI CCRYGG 1 cut(s) 328
BtgZI GCGATG 1 cut(s) 577
BtsCI GGATG 5 cut(s) 80, 291, 561, 779, 934
Cac8I GCNNGC 3 cut(s) 785, 859, 1054
CfoI GCGC 3 cut(s) 422, 437, 608
Cfr10I RCCGGY 2 cut(s) 650, 715
Cfr13I GGNCC 2 cut(s) 37, 923
ClaI ATCGAT 1 cut(s) 999
CseI GACGC 3 cut(s) 223, 329, 953
CspAI ACCGGT 1 cut(s) 715
CspCI CAANNNNNGTGG 2 cut(s) 757, 792
CviAII CATG 5 cut(s) 493, 601, 736, 949, 1037
DinI GGCGCC 2 cut(s) 436, 607
DpnI GATC 5 cut(s) 266, 659, 794, 837, 1002
DpnII GATC 5 cut(s) 264, 657, 792, 835, 1000
DrdI GACNNNNNNGTC 1 cut(s) 365
DseDI GACNNNNNNGTC 1 cut(s) 365
Eam1104I CTCTTC 3 cut(s) 15, 377, 699
EarI CTCTTC 3 cut(s) 15, 377, 699
EciI GGCGGA 3 cut(s) 289, 395, 859
Ecl136II GAGCTC 2 cut(s) 400, 523
Eco130I CCWWGG 4 cut(s) 423, 429, 510, 621
Eco24I GRGCYC 2 cut(s) 402, 525
Eco31I GGTCTC 1 cut(s) 12
Eco47I GGWCC 1 cut(s) 37
Eco53kI GAGCTC 2 cut(s) 400, 523
Eco57I CTGAAG 1 cut(s) 358
Eco88I CYCGRG 1 cut(s) 910
Eco91I GGTNACC 1 cut(s) 547
EcoICRI GAGCTC 2 cut(s) 400, 523
EcoNI CCTNNNNNAGG 2 cut(s) 514, 620
EcoO65I GGTNACC 1 cut(s) 547
EcoT14I CCWWGG 4 cut(s) 423, 429, 510, 621
EcoT38I GRGCYC 2 cut(s) 402, 525
EgeI GGCGCC 2 cut(s) 436, 607
EheI GGCGCC 2 cut(s) 436, 607
ErhI CCWWGG 4 cut(s) 423, 429, 510, 621
Esp3I CGTCTC 1 cut(s) 286
FaeI CATG 5 cut(s) 496, 604, 739, 952, 1040
FaiI YATR 5 cut(s) 494, 602, 737, 950, 1038
FalI AAGNNNNNCTT 4 cut(s) 233, 265, 422, 454
FaqI GGGAC 4 cut(s) 398, 652, 746, 832
FatI CATG 5 cut(s) 492, 600, 735, 948, 1036
FauI CCCGC 2 cut(s) 200, 655
FblI GTMKAC 2 cut(s) 462, 942
Fnu4HI GCNGC 6 cut(s) 17, 20, 351, 354, 636, 781
FokI GGATG 5 cut(s) 67, 278, 548, 786, 941
FriOI GRGCYC 2 cut(s) 402, 525
Fsp4HI GCNGC 6 cut(s) 17, 20, 351, 354, 636, 781
GlaI GCGC 3 cut(s) 421, 436, 607
GluI GCNGC 6 cut(s) 17, 20, 351, 354, 636, 781
HaeII RGCGCY 2 cut(s) 438, 609
HaeIII GGCC 4 cut(s) 428, 869, 925, 1056
HapII CCGG 9 cut(s) 213, 231, 246, 384, 545, 651, 716, 841, 926
HgaI GACGC 3 cut(s) 223, 329, 953
HhaI GCGC 3 cut(s) 422, 437, 608
Hin1I GRCGYC 6 cut(s) 234, 321, 360, 435, 606, 945
Hin1II CATG 5 cut(s) 496, 604, 739, 952, 1040
Hin6I GCGC 3 cut(s) 420, 435, 606
HinP1I GCGC 3 cut(s) 420, 435, 606
HincII GTYRAC 2 cut(s) 463, 943
HindII GTYRAC 2 cut(s) 463, 943
HinfI GANTC 1 cut(s) 847
HpaII CCGG 9 cut(s) 213, 231, 246, 384, 545, 651, 716, 841, 926
HphI GGTGA 6 cut(s) 181, 445, 541, 610, 635, 694
Hpy166II GTNNAC 2 cut(s) 463, 943
Hpy188I TCNGA 5 cut(s) 37, 657, 662, 813, 1005
Hpy188III TCNNGA 1 cut(s) 565
Hpy8I GTNNAC 2 cut(s) 463, 943
HpyAV CCTTC 6 cut(s) 196, 313, 448, 541, 722, 981
HpyCH4III ACNGT 2 cut(s) 586, 886
HpyCH4IV ACGT 2 cut(s) 360, 498
HpyCH4V TGCA 7 cut(s) 502, 723, 900, 932, 952, 982, 1036
HpyF10VI GCNNNNNNNGC 7 cut(s) 213, 246, 339, 384, 434, 944, 988
HpySE526I ACGT 2 cut(s) 360, 498
Hsp92I GRCGYC 6 cut(s) 234, 321, 360, 435, 606, 945
Hsp92II CATG 5 cut(s) 496, 604, 739, 952, 1040
HspAI GCGC 3 cut(s) 420, 435, 606
KasI GGCGCC 2 cut(s) 434, 605
Kzo9I GATC 5 cut(s) 264, 657, 792, 835, 1000
LmnI GCTCC 9 cut(s) 212, 302, 405, 520, 547, 625, 745, 757, 970
Lsp1109I GCAGC 1 cut(s) 767
LweI GCATC 3 cut(s) 300, 814, 919
MaeII ACGT 2 cut(s) 360, 498
MaeIII GTNAC 4 cut(s) 451, 547, 711, 1027
MalI GATC 5 cut(s) 266, 659, 794, 837, 1002
MbiI CCGCTC 3 cut(s) 207, 297, 861
MboI GATC 5 cut(s) 264, 657, 792, 835, 1000
MfeI CAATTG 2 cut(s) 93, 749
MflI RGATCY 2 cut(s) 264, 835
MhlI GDGCHC 2 cut(s) 402, 525
MluCI AATT 3 cut(s) 93, 749, 918
Mly113I GGCGCC 2 cut(s) 435, 606
MlyI GAGTC 1 cut(s) 841
MmeI TCCRAC 2 cut(s) 15, 635
MslI CAYNNNNRTG 3 cut(s) 497, 566, 740
MspI CCGG 9 cut(s) 213, 231, 246, 384, 545, 651, 716, 841, 926
MunI CAATTG 2 cut(s) 93, 749
Mva1269I GAATGC 1 cut(s) 342
MwoI GCNNNNNNNGC 7 cut(s) 213, 246, 339, 384, 434, 944, 988
NarI GGCGCC 2 cut(s) 435, 606
NdeII GATC 5 cut(s) 264, 657, 792, 835, 1000
NlaIII CATG 5 cut(s) 496, 604, 739, 952, 1040
NlaIV GGNNCC 5 cut(s) 217, 436, 543, 607, 908
NmeAIII GCCGAG 1 cut(s) 267
NmuCI GTSAC 3 cut(s) 451, 547, 1027
PcsI WCGNNNNNNNCGW 2 cut(s) 354, 582
PctI GAATGC 1 cut(s) 342
PflFI GACNNNGTC 1 cut(s) 584
PinAI ACCGGT 1 cut(s) 715
PkrI GCNGC 6 cut(s) 18, 21, 352, 355, 637, 782
PleI GAGTC 1 cut(s) 841
PluTI GGCGCC 2 cut(s) 438, 609
PpsI GAGTC 1 cut(s) 841
PshAI GACNNNNGTC 1 cut(s) 278
Psp124BI GAGCTC 2 cut(s) 402, 525
PspEI GGTNACC 1 cut(s) 547
PspN4I GGNNCC 5 cut(s) 217, 436, 543, 607, 908
PspPI GGNCC 2 cut(s) 37, 923
PsuI RGATCY 2 cut(s) 264, 835
PsyI GACNNNGTC 1 cut(s) 584
RseI CAYNNNNRTG 3 cut(s) 497, 566, 740
SacI GAGCTC 2 cut(s) 402, 525
SalI GTCGAC 2 cut(s) 461, 941
SatI GCNGC 6 cut(s) 17, 20, 351, 354, 636, 781
Sau3AI GATC 5 cut(s) 264, 657, 792, 835, 1000
Sau96I GGNCC 2 cut(s) 37, 923
SchI GAGTC 1 cut(s) 841
SduI GDGCHC 2 cut(s) 402, 525
SfaNI GCATC 3 cut(s) 300, 814, 919
SfoI GGCGCC 2 cut(s) 436, 607
SgrDI CGTCGACG 1 cut(s) 461
SinI GGWCC 1 cut(s) 37
SmiMI CAYNNNNRTG 3 cut(s) 497, 566, 740
SmlI CTYRAG 1 cut(s) 851
SmoI CTYRAG 1 cut(s) 851
Sse9I AATT 3 cut(s) 93, 749, 918
SspDI GGCGCC 2 cut(s) 434, 605
SstI GAGCTC 2 cut(s) 402, 525
StyI CCWWGG 4 cut(s) 423, 429, 510, 621
TaaI ACNGT 2 cut(s) 586, 886
TaiI ACGT 2 cut(s) 363, 501
TaqI TCGA 7 cut(s) 165, 318, 462, 534, 795, 942, 999
TasI AATT 3 cut(s) 93, 749, 918
TauI GCSGC 5 cut(s) 19, 22, 353, 356, 638
TseFI GTSAC 3 cut(s) 451, 547, 1027
TseI GCWGC 1 cut(s) 780
Tsp45I GTSAC 3 cut(s) 451, 547, 1027
TspDTI ATGAA 2 cut(s) 509, 710
TspGWI ACGGA 3 cut(s) 439, 448, 472
Tth111I GACNNNGTC 1 cut(s) 584
VpaK11BI GGWCC 1 cut(s) 37
XagI CCTNNNNNAGG 2 cut(s) 514, 620
XcmI CCANNNNNNNNNTGG 2 cut(s) 598, 955
XmiI GTMKAC 2 cut(s) 462, 942
ZraI GACGTC 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.