Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013166

Physical Location & Seq

Genomic Coordinates Reverse (-)

20520930 .. 20523098

Gene Structure 2169 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G55360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGAAGGTCACCGTCGTCTCCCGCAGCGGCAGAGAAGTCCTCAAAGCTCCCCTTGACCTCCCCGATTCGGCGACTGTTGCTGATCTGCAAGAAGCGTTTCATAAGAGAGCTAAGAAGTTTTACCCGTCGAGGCAAAGACTGACTCTTCCCGTGACTCCTGGATCGAAGGACAAACCTGTTGTCCTCAATAGCAAGAAATCACTGAAGGAGTACTGTGATGGAAACAACAACTCCTTAACTGTAGTCTTCAAAGACCTGGGGGCACAAGTTTCCTACCGCACACTCTTCTTCTTCGAGTATCTTGGCCCTCTCCTTATCTACCCTGTCTTTTACTACTTCCCTGTTTACAAGTTTCTTGGTTATGGAGAGGACTGTGTGATCCATCCGGTCCAGACGTACGCTATGTACTACTGGTGCTTTCACTACTTCAAACGGATCTTAGAAACGTTTTTCGTACATCGGTTCAGCCACGCAACCTCCCCAATCGGGAATGTGTTCAGGAACTGTGCTTATTACTGGAGCTTTGGTGCTTACATTGCTTATTACGTCAACCATCCCTTGTACACTCCAGTTAGTGACCTTCAGATGAAGATTGGTTTCGGGTTTGGTTTGGTTTGCCAAGTCGCAAACTTTTACTGTCACATATTGCTGAAGAATCTGAGGGACCCCAGTGGGGCTGGAGGCTACCAGATTCCACGCGGTTTCCTCTTCAACATTGTTACATGTGCCAATTACACTACCGAGATTTACCAATGGCTAGGATTCAACATCGCTACTCAGACCATTGCAGGATATGTTTTCCTCGCTGTTGCTGCTCTAATCATGACTAATTGGGCTCTTGGAAAGCACAGCCGTCTGAGAAAGATATTTGATGGAAAAGATGGAAAGCCAAAGTATCCAAGAAGATGGGTGATACTTCCTCCATTCCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009653 GO:0009888 GO:0009922 GO:0009923 GO:0009987 GO:0010025 GO:0010026 GO:0010090 GO:0010091 GO:0010166 GO:0010927 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016053 GO:0016491 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0022607 GO:0030030 GO:0030031 GO:0030154 GO:0030176 GO:0030497 GO:0031224 GO:0031227 GO:0031984 GO:0032501 GO:0032502 GO:0032787 GO:0032989 GO:0032991 GO:0042175 GO:0042335 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048468 GO:0048646 GO:0048856 GO:0048869 GO:0055114 GO:0071704 GO:0071840 GO:0071944 GO:0072330 GO:0090558 GO:0090626 GO:0098796 GO:0098827 GO:1901564 GO:1901568 GO:1901570 GO:1901576 GO:1902494 GO:1905499 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00062 ko01040 ko01110 ko01212 map00062 map01040 map01110 map01212

Pfam Domains

Protein Families

Steroid_dh

Protein Analysis

310

Amino Acids

35.72

Weight (kDa)

9.49

Isoelectric Point (pI)

41.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Steroid_dh	PF02544	159 - 309	2.2e-25	3-oxo-5-alpha-steroid 4-dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55360
fragaria_vesca	FvH4_7g22400
malus_domestica	MD01G1133600.v1.1 MD07G1197900.v1.1
prunus_persica	Prupe.2G234700_v2.0.a1
pyrus_communis	pycom01g15440 pycom07g18510
rosa_chinensis	RchiOBHm_Chr1g0367031
rosa_laevigata	RLG00000027305
rosa_multiflora	Rmu_sc0013700.1_g000003
rosa_roxburghii	Rroxscaffold_4G00289690
rosa_rugosa	Rorug01G0334100
rosa_samantha	Rh1AG340800 Rh1BG301300 Rh1CG317500 Rh1DG333700
rosa_wichuraiana	Rw0G023880 Rw1G030270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	699
AciI	CCGC	4 cut(s)	22, 27, 277, 699
AclI	AACGTT	1 cut(s)	446
AclWI	GGATC	3 cut(s)	169, 373, 443
AcuI	CTGAAG	3 cut(s)	224, 566, 671
AfaI	GTAC	5 cut(s)	212, 398, 407, 456, 563
AfiI	CCNNNNNNNGG	3 cut(s)	67, 486, 673
AflIII	ACRYGT	1 cut(s)	722
AgsI	TTSAA	4 cut(s)	250, 430, 712, 766
AjnI	CCWGG	2 cut(s)	157, 255
AluBI	AGCT	3 cut(s)	47, 110, 522
AluI	AGCT	3 cut(s)	47, 110, 522
Alw26I	GTCTC	1 cut(s)	22
AlwI	GGATC	3 cut(s)	169, 373, 443
AlwNI	CAGNNNCTG	1 cut(s)	504
AoxI	GGCC	1 cut(s)	304
ApeKI	GCWGC	2 cut(s)	24, 812
ArsI	GACNNNNNNTTYG	2 cut(s)	165, 197
Asp700I	GAANNNNTTC	2 cut(s)	96, 494
AspS9I	GGNCC	3 cut(s)	305, 388, 664
AsuHPI	GGTGA	1 cut(s)	922
AvaII	GGWCC	2 cut(s)	388, 664
BaeGI	GKGCMC	1 cut(s)	265
BanII	GRGCYC	1 cut(s)	838
BbsI	GAAGAC	1 cut(s)	238
BbvI	GCAGC	2 cut(s)	36, 799
BccI	CCATC	6 cut(s)	212, 390, 561, 866, 875, 900
BceAI	ACGGC	1 cut(s)	837
BciT130I	CCWGG	2 cut(s)	159, 257
BciVI	GTATCC	1 cut(s)	906
BcoDI	GTCTC	1 cut(s)	22
BfaI	CTAG	1 cut(s)	758
BfmI	CTRYAG	1 cut(s)	240
BfuI	GTATCC	1 cut(s)	906
BisI	GCNGC	3 cut(s)	25, 28, 813
BlsI	GCNGC	3 cut(s)	26, 29, 814
BmcAI	AGTACT	1 cut(s)	212
Bme1390I	CCNGG	2 cut(s)	159, 257
Bme18I	GGWCC	2 cut(s)	388, 664
BmgT120I	GGNCC	3 cut(s)	305, 388, 664
BmiI	GGNNCC	2 cut(s)	665, 666
BmrFI	CCNGG	2 cut(s)	159, 257
BmrI	ACTGGG	1 cut(s)	663
BmuI	ACTGGG	1 cut(s)	663
BpiI	GAAGAC	1 cut(s)	238
BplI	GAGNNNNNCTC	2 cut(s)	24, 56
BpmI	CTGGAG	3 cut(s)	538, 552, 699
BsaJI	CCNNGG	1 cut(s)	256
BsaWI	WCCGGW	1 cut(s)	385
BsaXI	ACNNNNNCTCC	6 cut(s)	215, 245, 461, 491, 511, 541
Bsc4I	CCNNNNNNNGG	3 cut(s)	67, 486, 673
Bse1I	ACTGG	4 cut(s)	416, 521, 569, 669
Bse3DI	GCAATG	2 cut(s)	534, 783
BseBI	CCWGG	2 cut(s)	159, 257
BseDI	CCNNGG	1 cut(s)	256
BseGI	GGATG	2 cut(s)	382, 553
BseLI	CCNNNNNNNGG	3 cut(s)	67, 486, 673
BseMI	GCAATG	2 cut(s)	534, 783
BseMII	CTCAG	3 cut(s)	650, 791, 848
BseNI	ACTGG	4 cut(s)	416, 521, 569, 669
BseSI	GKGCMC	1 cut(s)	265
BseXI	GCAGC	2 cut(s)	36, 799
Bsh1236I	CGCG	1 cut(s)	699
BshFI	GGCC	1 cut(s)	306
BsiSI	CCGG	1 cut(s)	386
BsiWI	CGTACG	1 cut(s)	396
BslFI	GGGAC	1 cut(s)	677
BslI	CCNNNNNNNGG	3 cut(s)	67, 486, 673
BsmAI	GTCTC	1 cut(s)	22
BsmBI	CGTCTC	1 cut(s)	22
BsmFI	GGGAC	1 cut(s)	677
BsnI	GGCC	1 cut(s)	306
Bsp1286I	GDGCHC	2 cut(s)	265, 838
Bsp1407I	TGTACA	1 cut(s)	561
Bsp143I	GATC	4 cut(s)	82, 161, 378, 435
BspACI	CCGC	4 cut(s)	22, 27, 277, 699
BspANI	GGCC	1 cut(s)	306
BspCNI	CTCAG	3 cut(s)	651, 790, 849
BspFNI	CGCG	1 cut(s)	699
BspHI	TCATGA	1 cut(s)	822
BspLI	GGNNCC	2 cut(s)	665, 666
BspPI	GGATC	3 cut(s)	169, 373, 443
BsrDI	GCAATG	2 cut(s)	534, 783
BsrGI	TGTACA	1 cut(s)	561
BsrI	ACTGG	4 cut(s)	416, 521, 569, 669
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	4 cut(s)	82, 161, 378, 435
Bst2UI	CCWGG	2 cut(s)	159, 257
Bst4CI	ACNGT	7 cut(s)	13, 76, 215, 241, 374, 506, 638
Bst6I	CTCTTC	3 cut(s)	150, 290, 713
BstAUI	TGTACA	1 cut(s)	561
BstDEI	CTNAG	5 cut(s)	111, 439, 659, 777, 857
BstEII	GGTNACC	1 cut(s)	7
BstF5I	GGATG	2 cut(s)	382, 553
BstFNI	CGCG	1 cut(s)	699
BstKTI	GATC	4 cut(s)	85, 164, 381, 438
BstMAI	GTCTC	1 cut(s)	22
BstMBI	GATC	4 cut(s)	82, 161, 378, 435
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 536, 812
BstNI	CCWGG	2 cut(s)	159, 257
BstNSI	RCATGY	1 cut(s)	726
BstPI	GGTNACC	1 cut(s)	7
BstSCI	CCNGG	2 cut(s)	157, 255
BstSFI	CTRYAG	1 cut(s)	240
BstSLI	GKGCMC	1 cut(s)	265
BstUI	CGCG	1 cut(s)	699
BstV1I	GCAGC	2 cut(s)	36, 799
BstV2I	GAAGAC	1 cut(s)	238
BstX2I	RGATCY	1 cut(s)	435
BstXI	CCANNNNNNTGG	1 cut(s)	906
BstYI	RGATCY	1 cut(s)	435
BsuI	GTATCC	1 cut(s)	906
BsuRI	GGCC	1 cut(s)	306
BtgZI	GCGATG	1 cut(s)	754
BtsCI	GGATG	2 cut(s)	382, 553
BtsIMutI	CAGTG	2 cut(s)	200, 676
CaiI	CAGNNNCTG	1 cut(s)	504
CciI	TCATGA	1 cut(s)	822
Cfr13I	GGNCC	3 cut(s)	305, 388, 664
Csp6I	GTAC	5 cut(s)	211, 397, 406, 455, 562
CviAII	CATG	2 cut(s)	723, 823
CviQI	GTAC	5 cut(s)	211, 397, 406, 455, 562
DdeI	CTNAG	5 cut(s)	111, 439, 659, 777, 857
DpnI	GATC	4 cut(s)	84, 163, 380, 437
DpnII	GATC	4 cut(s)	82, 161, 378, 435
Eam1104I	CTCTTC	3 cut(s)	150, 290, 713
EarI	CTCTTC	3 cut(s)	150, 290, 713
Eco24I	GRGCYC	1 cut(s)	838
Eco47I	GGWCC	2 cut(s)	388, 664
Eco57I	CTGAAG	3 cut(s)	224, 566, 671
Eco91I	GGTNACC	1 cut(s)	7
EcoO109I	RGGNCCY	1 cut(s)	664
EcoO65I	GGTNACC	1 cut(s)	7
EcoRII	CCWGG	2 cut(s)	157, 255
EcoT38I	GRGCYC	1 cut(s)	838
Esp3I	CGTCTC	1 cut(s)	22
FaeI	CATG	2 cut(s)	726, 826
FaiI	YATR	7 cut(s)	102, 363, 404, 644, 724, 795, 824
FalI	AAGNNNNNCTT	2 cut(s)	36, 68
FaqI	GGGAC	1 cut(s)	677
FatI	CATG	2 cut(s)	722, 822
FauI	CCCGC	1 cut(s)	29
Fnu4HI	GCNGC	3 cut(s)	25, 28, 813
FokI	GGATG	2 cut(s)	369, 540
FriOI	GRGCYC	1 cut(s)	838
Fsp4HI	GCNGC	3 cut(s)	25, 28, 813
FspBI	CTAG	1 cut(s)	758
GluI	GCNGC	3 cut(s)	25, 28, 813
GsuI	CTGGAG	3 cut(s)	538, 552, 699
HaeIII	GGCC	1 cut(s)	306
HapII	CCGG	1 cut(s)	386
Hin1II	CATG	2 cut(s)	726, 826
HincII	GTYRAC	1 cut(s)	550
HindII	GTYRAC	1 cut(s)	550
HinfI	GANTC	6 cut(s)	65, 142, 154, 655, 691, 762
HpaII	CCGG	1 cut(s)	386
HphI	GGTGA	1 cut(s)	922
Hpy166II	GTNNAC	3 cut(s)	346, 550, 564
Hpy188I	TCNGA	4 cut(s)	585, 660, 780, 858
Hpy188III	TCNNGA	4 cut(s)	391, 487, 499, 823
Hpy8I	GTNNAC	3 cut(s)	346, 550, 564
Hpy99I	CGWCG	2 cut(s)	17, 130
HpyAV	CCTTC	3 cut(s)	160, 199, 590
HpyCH4III	ACNGT	7 cut(s)	13, 76, 215, 241, 374, 506, 638
HpyCH4IV	ACGT	3 cut(s)	395, 446, 546
HpyCH4V	TGCA	2 cut(s)	88, 788
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 536, 812
HpyF3I	CTNAG	5 cut(s)	111, 439, 659, 777, 857
HpySE526I	ACGT	3 cut(s)	395, 446, 546
Hsp92II	CATG	2 cut(s)	726, 826
KflI	GGGWCCC	1 cut(s)	664
Kzo9I	GATC	4 cut(s)	82, 161, 378, 435
LmnI	GCTCC	2 cut(s)	52, 519
Lsp1109I	GCAGC	2 cut(s)	36, 799
MaeI	CTAG	1 cut(s)	758
MaeII	ACGT	3 cut(s)	395, 446, 546
MaeIII	GTNAC	5 cut(s)	7, 151, 575, 638, 718
MalI	GATC	4 cut(s)	84, 163, 380, 437
MboI	GATC	4 cut(s)	82, 161, 378, 435
MboII	GAAGA	9 cut(s)	137, 238, 277, 280, 283, 601, 664, 700, 915
MflI	RGATCY	1 cut(s)	435
MhlI	GDGCHC	2 cut(s)	265, 838
MluCI	AATT	2 cut(s)	730, 829
MlyI	GAGTC	2 cut(s)	136, 148
MroXI	GAANNNNTTC	2 cut(s)	96, 494
MseI	TTAA	1 cut(s)	236
MspA1I	CMGCKG	1 cut(s)	27
MspI	CCGG	1 cut(s)	386
MspR9I	CCNGG	2 cut(s)	159, 257
MvaI	CCWGG	2 cut(s)	159, 257
MvnI	CGCG	1 cut(s)	699
MwoI	GCNNNNNNNGC	3 cut(s)	77, 536, 812
NdeII	GATC	4 cut(s)	82, 161, 378, 435
NlaIII	CATG	2 cut(s)	726, 826
NlaIV	GGNNCC	2 cut(s)	665, 666
NmuCI	GTSAC	4 cut(s)	7, 151, 575, 638
NspI	RCATGY	1 cut(s)	726
PagI	TCATGA	1 cut(s)	822
PciI	ACATGT	1 cut(s)	722
PdmI	GAANNNNTTC	2 cut(s)	96, 494
PfeI	GAWTC	4 cut(s)	65, 655, 691, 762
Pfl23II	CGTACG	1 cut(s)	396
PfoI	TCCNGGA	1 cut(s)	157
PkrI	GCNGC	3 cut(s)	26, 29, 814
PleI	GAGTC	2 cut(s)	136, 148
PpsI	GAGTC	2 cut(s)	136, 148
PpuMI	RGGWCCY	1 cut(s)	664
PscI	ACATGT	1 cut(s)	722
Psp1406I	AACGTT	1 cut(s)	446
Psp5II	RGGWCCY	1 cut(s)	664
Psp6I	CCWGG	2 cut(s)	157, 255
PspEI	GGTNACC	1 cut(s)	7
PspGI	CCWGG	2 cut(s)	157, 255
PspLI	CGTACG	1 cut(s)	396
PspN4I	GGNNCC	2 cut(s)	665, 666
PspPI	GGNCC	3 cut(s)	305, 388, 664
PspPPI	RGGWCCY	1 cut(s)	664
PstNI	CAGNNNCTG	1 cut(s)	504
PsuI	RGATCY	1 cut(s)	435
RsaI	GTAC	5 cut(s)	212, 398, 407, 456, 563
RsaNI	GTAC	5 cut(s)	211, 397, 406, 455, 562
SaqAI	TTAA	1 cut(s)	236
SatI	GCNGC	3 cut(s)	25, 28, 813
Sau3AI	GATC	4 cut(s)	82, 161, 378, 435
Sau96I	GGNCC	3 cut(s)	305, 388, 664
ScaI	AGTACT	1 cut(s)	212
SchI	GAGTC	2 cut(s)	136, 148
ScrFI	CCNGG	2 cut(s)	159, 257
SduI	GDGCHC	2 cut(s)	265, 838
SfcI	CTRYAG	1 cut(s)	240
SinI	GGWCC	2 cut(s)	388, 664
Sse9I	AATT	2 cut(s)	730, 829
SsiI	CCGC	4 cut(s)	22, 27, 277, 699
SspMI	CTAG	1 cut(s)	758
StyD4I	CCNGG	2 cut(s)	157, 255
TaaI	ACNGT	7 cut(s)	13, 76, 215, 241, 374, 506, 638
TaiI	ACGT	3 cut(s)	398, 449, 549
TaqI	TCGA	3 cut(s)	128, 164, 294
TasI	AATT	2 cut(s)	730, 829
TatI	WGTACW	3 cut(s)	210, 405, 561
TauI	GCSGC	1 cut(s)	30
TfiI	GAWTC	4 cut(s)	65, 655, 691, 762
Tru1I	TTAA	1 cut(s)	236
Tru9I	TTAA	1 cut(s)	236
TscAI	CASTG	2 cut(s)	207, 676
TseFI	GTSAC	4 cut(s)	7, 151, 575, 638
TseI	GCWGC	2 cut(s)	24, 812
Tsp45I	GTSAC	4 cut(s)	7, 151, 575, 638
TspDTI	ATGAA	3 cut(s)	17, 89, 602
TspGWI	ACGGA	1 cut(s)	448
TspRI	CASTG	2 cut(s)	207, 676
VpaK11BI	GGWCC	2 cut(s)	388, 664
XceI	RCATGY	1 cut(s)	726
XmnI	GAANNNNTTC	2 cut(s)	96, 494
XspI	CTAG	1 cut(s)	758
ZrmI	AGTACT	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.