Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0013166

Physical Location & Seq

Genomic Coordinates Forward (+)

17667951 .. 17671391

Gene Structure 3441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g22400.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGAAGGTCACCGTAGTCACAAGGAGTGGCAGAGAGCTTTTCAAGGGTGGCCTTGAGCTCAGTGACTCTGCCACAGTTGCTGATCTGCAGGAGGAGATCCATAAGAGATCCAAAAAGTTCTATCCTTCAAGGCAGCGACTTACTCTTCCCGTCCAACCTGGATCAAAAGAGAAGGCAGTTGTCCTCACCTCCAAGAAGAGTCTCAAAGATTATTACAGTGGAAACTCAGACAACTTAACCGTGGTGTTCAAGGACTTGGGCCCACAAGTTGAATACAGAACACTCTTCTTCTTTGAGTATATTGGTCCTCTGCTCATTTATCCCATATTTTACTTCTTCCCTGTTTACCAGTACTTGGGCTTCAAAGGAGACCGTGTCATCCACCCAGTCCAGACATATGCTCTATATTACTATTGCTTCCACTACTTTAAACGTATTATGGAAACATTTTTCATACATAGGTTCAGTCATGCAACCTCACCTGTCTCCTATGTAACCCGGAACTGTGCATATTATTGGAGCTTTGCAGCACTCATGTCTTACTATGTGAATCACCCACTTTACACCCCTGTCAGCGACCTCCAAATGAAGATTGGGTTTGGTTTTGGGATAATAAATCAAATTGCGAACTTCTATTGCCATATTCTACTGAGGAATCTGCGAAGTCCTGATGGAAGTGGAGGCTATCAAATACCACGTGGTTTTCTATTCAATATTGTGACATGTGCAAATTACACGACTGAGATTTATCAGTGGTTGGGTTTTAATATTGCAACACAGACGGTTGCTGGTTATCTTTTTGCTGTAGTTGCTGCTTCTATCATGACCAATTGGGCCCTAGGAAAACACCGCCGTTTAAAGAAGCTATTTGATGGGAAGGACGGAAGACCCAAGTATCCACGTCGATGGGTGATTCTACCCCCATTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009653 GO:0009888 GO:0009922 GO:0009923 GO:0009987 GO:0010025 GO:0010026 GO:0010090 GO:0010091 GO:0010166 GO:0010927 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016053 GO:0016491 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0022607 GO:0030030 GO:0030031 GO:0030154 GO:0030176 GO:0030497 GO:0031224 GO:0031227 GO:0031984 GO:0032501 GO:0032502 GO:0032787 GO:0032989 GO:0032991 GO:0042175 GO:0042335 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048468 GO:0048646 GO:0048856 GO:0048869 GO:0055114 GO:0071704 GO:0071840 GO:0071944 GO:0072330 GO:0090558 GO:0090626 GO:0098796 GO:0098827 GO:1901564 GO:1901568 GO:1901570 GO:1901576 GO:1902494 GO:1905499 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00062 ko01040 ko01110 ko01212 map00062 map01040 map01110 map01212

Pfam Domains

Protein Families

Steroid_dh

Protein Analysis

311

Amino Acids

36.03

Weight (kDa)

9.64

Isoelectric Point (pI)

49.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Steroid_dh	PF02544	159 - 309	1.6e-26	3-oxo-5-alpha-steroid 4-dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55360
fragaria_vesca	FvH4_7g22400
malus_domestica	MD01G1133600.v1.1 MD07G1197900.v1.1
prunus_persica	Prupe.2G234700_v2.0.a1
pyrus_communis	pycom01g15440 pycom07g18510
rosa_chinensis	RchiOBHm_Chr1g0367031
rosa_laevigata	RLG00000027305
rosa_multiflora	Rmu_sc0013700.1_g000003
rosa_roxburghii	Rroxscaffold_4G00289690
rosa_rugosa	Rorug01G0334100
rosa_samantha	Rh1AG340800 Rh1BG301300 Rh1CG317500 Rh1DG333700
rosa_wichuraiana	Rw0G023880 Rw1G030270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	355
AciI	CCGC	1 cut(s)	850
AclWI	GGATC	3 cut(s)	91, 102, 169
AcvI	CACGTG	1 cut(s)	698
AfaI	GTAC	1 cut(s)	353
AfiI	CCNNNNNNNGG	1 cut(s)	355
AflIII	ACRYGT	1 cut(s)	722
AgsI	TTSAA	6 cut(s)	43, 129, 250, 272, 364, 712
AjiI	CACGTC	1 cut(s)	902
AjnI	CCWGG	1 cut(s)	157
AluBI	AGCT	4 cut(s)	37, 58, 522, 865
AluI	AGCT	4 cut(s)	37, 58, 522, 865
Alw21I	GWGCWC	1 cut(s)	60
Alw26I	GTCTC	3 cut(s)	206, 363, 490
AlwI	GGATC	3 cut(s)	91, 102, 169
AlwNI	CAGNNNCTG	1 cut(s)	80
AoxI	GGCC	3 cut(s)	49, 259, 834
ApaI	GGGCCC	2 cut(s)	263, 838
ApeKI	GCWGC	3 cut(s)	133, 527, 812
AspA2I	CCTAGG	1 cut(s)	838
AspS9I	GGNCC	5 cut(s)	259, 260, 305, 834, 835
AsuC2I	CCSGG	1 cut(s)	499
AsuHPI	GGTGA	4 cut(s)	178, 471, 545, 922
AvaII	GGWCC	1 cut(s)	305
AvrII	CCTAGG	1 cut(s)	838
BaeGI	GKGCMC	2 cut(s)	263, 838
BaeI	ACNNNNGTAYC	2 cut(s)	878, 911
BanII	GRGCYC	3 cut(s)	60, 263, 838
BarI	GAAGNNNNNNTAC	2 cut(s)	344, 376
BbrPI	CACGTG	1 cut(s)	698
BbsI	GAAGAC	1 cut(s)	892
Bbv12I	GWGCWC	1 cut(s)	60
BbvI	GCAGC	3 cut(s)	145, 539, 799
BccI	CCATC	3 cut(s)	665, 866, 900
BceAI	ACGGC	1 cut(s)	837
BciT130I	CCWGG	1 cut(s)	159
BciVI	GTATCC	1 cut(s)	906
BcnI	CCSGG	1 cut(s)	499
BcoDI	GTCTC	3 cut(s)	206, 363, 490
BfaI	CTAG	1 cut(s)	839
BfmI	CTRYAG	2 cut(s)	86, 804
BfuI	GTATCC	1 cut(s)	906
BisI	GCNGC	3 cut(s)	134, 528, 813
BlnI	CCTAGG	1 cut(s)	838
BlsI	GCNGC	3 cut(s)	135, 529, 814
BmcAI	AGTACT	1 cut(s)	353
Bme1390I	CCNGG	2 cut(s)	159, 499
Bme18I	GGWCC	1 cut(s)	305
BmgBI	CACGTC	1 cut(s)	902
BmgT120I	GGNCC	5 cut(s)	259, 260, 305, 834, 835
BmiI	GGNNCC	2 cut(s)	261, 836
BmrFI	CCNGG	2 cut(s)	159, 499
BmrI	ACTGGG	1 cut(s)	380
BmuI	ACTGGG	1 cut(s)	380
BpiI	GAAGAC	1 cut(s)	892
BpuEI	CTTGAG	1 cut(s)	74
BpuMI	CCSGG	1 cut(s)	499
BsaAI	YACGTR	1 cut(s)	698
BsaI	GGTCTC	1 cut(s)	363
BsaJI	CCNNGG	2 cut(s)	240, 838
BsaXI	ACNNNNNCTCC	2 cut(s)	360, 390
Bsc4I	CCNNNNNNNGG	1 cut(s)	355
Bse1I	ACTGG	2 cut(s)	349, 386
BseBI	CCWGG	1 cut(s)	159
BseDI	CCNNGG	2 cut(s)	240, 838
BseGI	GGATG	1 cut(s)	378
BseLI	CCNNNNNNNGG	1 cut(s)	355
BseMII	CTCAG	4 cut(s)	73, 240, 641, 732
BseNI	ACTGG	2 cut(s)	349, 386
BseRI	GAGGAG	1 cut(s)	107
BseSI	GKGCMC	2 cut(s)	263, 838
BseXI	GCAGC	3 cut(s)	145, 539, 799
BshFI	GGCC	3 cut(s)	51, 261, 836
BsiHKAI	GWGCWC	1 cut(s)	60
BsiSI	CCGG	1 cut(s)	499
BslI	CCNNNNNNNGG	1 cut(s)	355
BsmAI	GTCTC	3 cut(s)	206, 363, 490
BsnI	GGCC	3 cut(s)	51, 261, 836
Bso31I	GGTCTC	1 cut(s)	363
Bsp120I	GGGCCC	2 cut(s)	259, 834
Bsp1286I	GDGCHC	3 cut(s)	60, 263, 838
Bsp143I	GATC	4 cut(s)	82, 96, 107, 161
BspACI	CCGC	1 cut(s)	850
BspANI	GGCC	3 cut(s)	51, 261, 836
BspCNI	CTCAG	4 cut(s)	72, 239, 642, 733
BspHI	TCATGA	1 cut(s)	822
BspLI	GGNNCC	2 cut(s)	261, 836
BspMAI	CTGCAG	1 cut(s)	90
BspPI	GGATC	3 cut(s)	91, 102, 169
BspTNI	GGTCTC	1 cut(s)	363
BsrI	ACTGG	2 cut(s)	349, 386
BssECI	CCNNGG	2 cut(s)	240, 838
BssMI	GATC	4 cut(s)	82, 96, 107, 161
BssT1I	CCWWGG	1 cut(s)	838
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	7 cut(s)	13, 76, 218, 241, 374, 506, 784
Bst6I	CTCTTC	3 cut(s)	150, 191, 290
BstBAI	YACGTR	1 cut(s)	698
BstDEI	CTNAG	4 cut(s)	59, 226, 650, 741
BstDSI	CCRYGG	1 cut(s)	240
BstEII	GGTNACC	1 cut(s)	7
BstF5I	GGATG	1 cut(s)	378
BstKTI	GATC	4 cut(s)	85, 99, 110, 164
BstMAI	GTCTC	3 cut(s)	206, 363, 490
BstMBI	GATC	4 cut(s)	82, 96, 107, 161
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 809
BstNI	CCWGG	1 cut(s)	159
BstNSI	RCATGY	1 cut(s)	726
BstPI	GGTNACC	1 cut(s)	7
BstSCI	CCNGG	2 cut(s)	157, 497
BstSFI	CTRYAG	2 cut(s)	86, 804
BstSLI	GKGCMC	2 cut(s)	263, 838
BstV1I	GCAGC	3 cut(s)	145, 539, 799
BstV2I	GAAGAC	1 cut(s)	892
BstX2I	RGATCY	2 cut(s)	96, 107
BstXI	CCANNNNNNTGG	1 cut(s)	906
BstYI	RGATCY	2 cut(s)	96, 107
BsuI	GTATCC	1 cut(s)	906
BsuRI	GGCC	3 cut(s)	51, 261, 836
BtgI	CCRYGG	1 cut(s)	240
BtrI	CACGTC	1 cut(s)	902
BtsCI	GGATG	1 cut(s)	378
BtsIMutI	CAGTG	3 cut(s)	67, 223, 758
CaiI	CAGNNNCTG	1 cut(s)	80
CciI	TCATGA	1 cut(s)	822
Cfr13I	GGNCC	5 cut(s)	259, 260, 305, 834, 835
Csp6I	GTAC	1 cut(s)	352
CviAII	CATG	4 cut(s)	470, 535, 723, 823
CviJI	RGCY	9 cut(s)	37, 51, 58, 261, 360, 522, 684, 836, 865
CviKI_1	RGCY	9 cut(s)	37, 51, 58, 261, 360, 522, 684, 836, 865
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	4 cut(s)	59, 226, 650, 741
DpnI	GATC	4 cut(s)	84, 98, 109, 163
DpnII	GATC	4 cut(s)	82, 96, 107, 161
DraI	TTTAAA	2 cut(s)	430, 858
Eam1104I	CTCTTC	3 cut(s)	150, 191, 290
EarI	CTCTTC	3 cut(s)	150, 191, 290
Ecl136II	GAGCTC	1 cut(s)	58
Eco130I	CCWWGG	1 cut(s)	838
Eco24I	GRGCYC	3 cut(s)	60, 263, 838
Eco31I	GGTCTC	1 cut(s)	363
Eco47I	GGWCC	1 cut(s)	305
Eco53kI	GAGCTC	1 cut(s)	58
Eco72I	CACGTG	1 cut(s)	698
Eco91I	GGTNACC	1 cut(s)	7
EcoICRI	GAGCTC	1 cut(s)	58
EcoO109I	RGGNCCY	1 cut(s)	835
EcoO65I	GGTNACC	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	157
EcoT14I	CCWWGG	1 cut(s)	838
EcoT38I	GRGCYC	3 cut(s)	60, 263, 838
ErhI	CCWWGG	1 cut(s)	838
FaeI	CATG	4 cut(s)	473, 538, 726, 826
FatI	CATG	4 cut(s)	469, 534, 722, 822
FauNDI	CATATG	1 cut(s)	397
Fnu4HI	GCNGC	3 cut(s)	134, 528, 813
FokI	GGATG	1 cut(s)	365
FriOI	GRGCYC	3 cut(s)	60, 263, 838
Fsp4HI	GCNGC	3 cut(s)	134, 528, 813
FspBI	CTAG	1 cut(s)	839
GluI	GCNGC	3 cut(s)	134, 528, 813
HaeIII	GGCC	3 cut(s)	51, 261, 836
HapII	CCGG	1 cut(s)	499
Hin1II	CATG	4 cut(s)	473, 538, 726, 826
HinfI	GANTC	5 cut(s)	65, 199, 550, 655, 913
HpaII	CCGG	1 cut(s)	499
HphI	GGTGA	4 cut(s)	178, 471, 545, 922
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188I	TCNGA	1 cut(s)	229
Hpy188III	TCNNGA	3 cut(s)	391, 668, 823
Hpy8I	GTNNAC	1 cut(s)	346
Hpy99I	CGWCG	1 cut(s)	906
HpyAV	CCTTC	3 cut(s)	135, 166, 871
HpyCH4III	ACNGT	7 cut(s)	13, 76, 218, 241, 374, 506, 784
HpyCH4IV	ACGT	3 cut(s)	433, 697, 901
HpyCH4V	TGCA	6 cut(s)	88, 473, 509, 527, 728, 773
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 809
HpyF3I	CTNAG	4 cut(s)	59, 226, 650, 741
HpySE526I	ACGT	3 cut(s)	433, 697, 901
Hsp92II	CATG	4 cut(s)	473, 538, 726, 826
Kzo9I	GATC	4 cut(s)	82, 96, 107, 161
LmnI	GCTCC	1 cut(s)	519
Lsp1109I	GCAGC	3 cut(s)	145, 539, 799
MaeI	CTAG	1 cut(s)	839
MaeII	ACGT	3 cut(s)	433, 697, 901
MaeIII	GTNAC	5 cut(s)	7, 16, 62, 493, 718
MalI	GATC	4 cut(s)	84, 98, 109, 163
MboI	GATC	4 cut(s)	82, 96, 107, 161
MboII	GAAGA	7 cut(s)	137, 208, 277, 280, 328, 601, 897
MfeI	CAATTG	1 cut(s)	829
MflI	RGATCY	2 cut(s)	96, 107
MhlI	GDGCHC	3 cut(s)	60, 263, 838
MluCI	AATT	3 cut(s)	621, 730, 829
MlyI	GAGTC	2 cut(s)	59, 208
MmeI	TCCRAC	1 cut(s)	178
MnlI	CCTC	8 cut(s)	85, 194, 199, 318, 487, 590, 645, 674
MseI	TTAA	4 cut(s)	236, 429, 765, 857
MslI	CAYNNNNRTG	1 cut(s)	904
MspI	CCGG	1 cut(s)	499
MspR9I	CCNGG	2 cut(s)	159, 499
MunI	CAATTG	1 cut(s)	829
MvaI	CCWGG	1 cut(s)	159
MwoI	GCNNNNNNNGC	2 cut(s)	77, 809
NciI	CCSGG	1 cut(s)	499
NdeI	CATATG	1 cut(s)	397
NdeII	GATC	4 cut(s)	82, 96, 107, 161
NlaIII	CATG	4 cut(s)	473, 538, 726, 826
NlaIV	GGNNCC	2 cut(s)	261, 836
NmuCI	GTSAC	4 cut(s)	7, 16, 62, 718
NspI	RCATGY	1 cut(s)	726
PagI	TCATGA	1 cut(s)	822
PciI	ACATGT	1 cut(s)	722
PfeI	GAWTC	3 cut(s)	550, 655, 913
PflFI	GACNNNGTC	1 cut(s)	374
PflMI	CCANNNNNTGG	1 cut(s)	355
PkrI	GCNGC	3 cut(s)	135, 529, 814
PleI	GAGTC	2 cut(s)	59, 207
PmaCI	CACGTG	1 cut(s)	698
PmlI	CACGTG	1 cut(s)	698
PpsI	GAGTC	2 cut(s)	59, 207
Ppu21I	YACGTR	1 cut(s)	698
PscI	ACATGT	1 cut(s)	722
Psp124BI	GAGCTC	1 cut(s)	60
Psp6I	CCWGG	1 cut(s)	157
PspCI	CACGTG	1 cut(s)	698
PspEI	GGTNACC	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	157
PspN4I	GGNNCC	2 cut(s)	261, 836
PspOMI	GGGCCC	2 cut(s)	259, 834
PspPI	GGNCC	5 cut(s)	259, 260, 305, 834, 835
PstI	CTGCAG	1 cut(s)	90
PstNI	CAGNNNCTG	1 cut(s)	80
PsuI	RGATCY	2 cut(s)	96, 107
PsyI	GACNNNGTC	1 cut(s)	374
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
RseI	CAYNNNNRTG	1 cut(s)	904
SacI	GAGCTC	1 cut(s)	60
SaqAI	TTAA	4 cut(s)	236, 429, 765, 857
SatI	GCNGC	3 cut(s)	134, 528, 813
Sau3AI	GATC	4 cut(s)	82, 96, 107, 161
Sau96I	GGNCC	5 cut(s)	259, 260, 305, 834, 835
ScaI	AGTACT	1 cut(s)	353
SchI	GAGTC	2 cut(s)	59, 208
ScrFI	CCNGG	2 cut(s)	159, 499
SduI	GDGCHC	3 cut(s)	60, 263, 838
SfcI	CTRYAG	2 cut(s)	86, 804
SinI	GGWCC	1 cut(s)	305
SmiMI	CAYNNNNRTG	1 cut(s)	904
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
Sse9I	AATT	3 cut(s)	621, 730, 829
SsiI	CCGC	1 cut(s)	850
SspI	AATATT	2 cut(s)	715, 769
SspMI	CTAG	1 cut(s)	839
SstI	GAGCTC	1 cut(s)	60
StyD4I	CCNGG	2 cut(s)	157, 497
StyI	CCWWGG	1 cut(s)	838
TaaI	ACNGT	7 cut(s)	13, 76, 218, 241, 374, 506, 784
TaiI	ACGT	3 cut(s)	436, 700, 904
TaqI	TCGA	1 cut(s)	904
TasI	AATT	3 cut(s)	621, 730, 829
TatI	WGTACW	1 cut(s)	351
TfiI	GAWTC	3 cut(s)	550, 655, 913
Tru1I	TTAA	4 cut(s)	236, 429, 765, 857
Tru9I	TTAA	4 cut(s)	236, 429, 765, 857
TscAI	CASTG	3 cut(s)	67, 223, 758
TseFI	GTSAC	4 cut(s)	7, 16, 62, 718
TseI	GCWGC	3 cut(s)	133, 527, 812
Tsp45I	GTSAC	4 cut(s)	7, 16, 62, 718
TspDTI	ATGAA	3 cut(s)	17, 442, 602
TspGWI	ACGGA	1 cut(s)	897
TspRI	CASTG	3 cut(s)	67, 223, 758
Tth111I	GACNNNGTC	1 cut(s)	374
Van91I	CCANNNNNTGG	1 cut(s)	355
VpaK11BI	GGWCC	1 cut(s)	305
XceI	RCATGY	1 cut(s)	726
XcmI	CCANNNNNNNNNTGG	1 cut(s)	590
XmaJI	CCTAGG	1 cut(s)	838
XspI	CTAG	1 cut(s)	839
ZrmI	AGTACT	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.