Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0013166

Physical Location & Seq

Genomic Coordinates Reverse (-)

10457640 .. 10460285

Gene Structure 2646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027305

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGAAGGTCATCGTAGTTACTAGGAGTGGTAGAGAGCTTTTCAAGGGTGGCCTTGAGCTCAGTGACTCTGCCACAGTTGCTGATCTGCAGGAGGAGATCCATAAGCGATCCAAAAAGTTCTATCCTTCAAGGCAGCGGCTTACTCTTCCCGTCAAACCAGGATCAAAAGAGAAGGCAGTTGTCCTCGCCTCCAAGAAGAGTCTCAAAGATTATTACAGTGGAAACTCAGACAACTTCACTGTGGTGTTTAAGGACTTAGGCCCACAAGTTGAATACCGAACGCTCTTCTTCTTTGAGTATATTGGTCCTTTGCTCATTTATCCCATATTTTACTTCTTCCCTGTTTACCAGTACTTGGGCTTCAAAGAAGACCGTGTCATCCACCCAGTACAGACATATGCTCTATATTATTATTGCTTCCACTACTTTAAACGTATTATGGAAACATTTTTCATACATAGGTTCAGCCATGCAACCTCACCTCTCTCCTATGTATCTCGGAATTGTGCTTATTATTGGAGCTTTGCAGCACTTATGGCTTACTACGTGAATCACCCACTTTACACCCCTGTTAGCGACCTCCAAATGAAGATTGGGTTTGGTTTTGGGATAATATGTCAAATCGCAAACTTATATTGTCATATTCTATTGAGGAATCTGAGAAGCCCTGATGGAAGTGGAGGCTATCAAATACCACGTGGTTTTCTATTCAATATTGTGACATGCGCAAATTACACAACTGAGATTTACCAGTGGTTGGGCTTTAATATTGCAACGCAGACGGTTGCTGGTTATCTTTTTGCTGTAGTTGCTGCTTCTATCATGACCAATTGGGCCCTTGGAAAGCACCGCCGTTTAAAGAAGCTATTTGATGGGAAGGACGGAAGACCTAAGTATCCACGTCGATGGGTGATTCTACCGCCATTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009653 GO:0009888 GO:0009922 GO:0009923 GO:0009987 GO:0010025 GO:0010026 GO:0010090 GO:0010091 GO:0010166 GO:0010927 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016053 GO:0016491 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0022607 GO:0030030 GO:0030031 GO:0030154 GO:0030176 GO:0030497 GO:0031224 GO:0031227 GO:0031984 GO:0032501 GO:0032502 GO:0032787 GO:0032989 GO:0032991 GO:0042175 GO:0042335 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048468 GO:0048646 GO:0048856 GO:0048869 GO:0055114 GO:0071704 GO:0071840 GO:0071944 GO:0072330 GO:0090558 GO:0090626 GO:0098796 GO:0098827 GO:1901564 GO:1901568 GO:1901570 GO:1901576 GO:1902494 GO:1905499 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00062 ko01040 ko01110 ko01212 map00062 map01040 map01110 map01212

Pfam Domains

Protein Families

Steroid_dh

Protein Analysis

311

Amino Acids

36.06

Weight (kDa)

9.59

Isoelectric Point (pI)

47.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Steroid_dh	PF02544	159 - 309	5.7e-26	3-oxo-5-alpha-steroid 4-dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55360
fragaria_vesca	FvH4_7g22400
malus_domestica	MD01G1133600.v1.1 MD07G1197900.v1.1
prunus_persica	Prupe.2G234700_v2.0.a1
pyrus_communis	pycom01g15440 pycom07g18510
rosa_chinensis	RchiOBHm_Chr1g0367031
rosa_laevigata	RLG00000027305
rosa_multiflora	Rmu_sc0013700.1_g000003
rosa_roxburghii	Rroxscaffold_4G00289690
rosa_rugosa	Rorug01G0334100
rosa_samantha	Rh1AG340800 Rh1BG301300 Rh1CG317500 Rh1DG333700
rosa_wichuraiana	Rw0G023880 Rw1G030270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	727
AccB7I	CCANNNNNTGG	2 cut(s)	355, 757
AciI	CCGC	3 cut(s)	136, 850, 920
AclWI	GGATC	3 cut(s)	91, 102, 169
AcvI	CACGTG	1 cut(s)	698
AfaI	GTAC	2 cut(s)	353, 390
AfiI	CCNNNNNNNGG	2 cut(s)	355, 757
AgsI	TTSAA	5 cut(s)	43, 129, 272, 364, 712
AjiI	CACGTC	1 cut(s)	902
AjnI	CCWGG	1 cut(s)	157
AleI	CACNNNNGTG	1 cut(s)	242
AluBI	AGCT	4 cut(s)	37, 58, 522, 865
AluI	AGCT	4 cut(s)	37, 58, 522, 865
Alw21I	GWGCWC	1 cut(s)	60
Alw26I	GTCTC	1 cut(s)	206
AlwI	GGATC	3 cut(s)	91, 102, 169
AlwNI	CAGNNNCTG	1 cut(s)	80
AoxI	GGCC	3 cut(s)	49, 259, 834
ApaI	GGGCCC	1 cut(s)	838
ApeKI	GCWGC	3 cut(s)	133, 527, 812
AspLEI	GCGC	1 cut(s)	728
AspS9I	GGNCC	4 cut(s)	260, 305, 834, 835
AsuHPI	GGTGA	3 cut(s)	471, 545, 922
AvaII	GGWCC	1 cut(s)	305
BaeGI	GKGCMC	1 cut(s)	838
BaeI	ACNNNNGTAYC	2 cut(s)	878, 911
BanII	GRGCYC	2 cut(s)	60, 838
BarI	GAAGNNNNNNTAC	2 cut(s)	344, 376
BbrPI	CACGTG	1 cut(s)	698
BbsI	GAAGAC	2 cut(s)	375, 892
Bbv12I	GWGCWC	1 cut(s)	60
BbvI	GCAGC	3 cut(s)	145, 539, 799
BccI	CCATC	3 cut(s)	665, 866, 900
BceAI	ACGGC	1 cut(s)	837
BciT130I	CCWGG	1 cut(s)	159
BciVI	GTATCC	1 cut(s)	906
BcoDI	GTCTC	1 cut(s)	206
BfaI	CTAG	1 cut(s)	21
BfmI	CTRYAG	2 cut(s)	86, 804
BfuI	GTATCC	1 cut(s)	906
BisI	GCNGC	4 cut(s)	134, 137, 528, 813
BlsI	GCNGC	4 cut(s)	135, 138, 529, 814
BmcAI	AGTACT	1 cut(s)	353
Bme1390I	CCNGG	1 cut(s)	159
Bme18I	GGWCC	1 cut(s)	305
BmgBI	CACGTC	1 cut(s)	902
BmgT120I	GGNCC	4 cut(s)	260, 305, 834, 835
BmiI	GGNNCC	1 cut(s)	836
BmrFI	CCNGG	1 cut(s)	159
BmrI	ACTGGG	1 cut(s)	380
BmuI	ACTGGG	1 cut(s)	380
BpiI	GAAGAC	2 cut(s)	375, 892
BpuEI	CTTGAG	1 cut(s)	74
BsaAI	YACGTR	2 cut(s)	547, 698
BsaJI	CCNNGG	1 cut(s)	838
Bsc4I	CCNNNNNNNGG	2 cut(s)	355, 757
Bse1I	ACTGG	3 cut(s)	349, 386, 751
BseBI	CCWGG	1 cut(s)	159
BseDI	CCNNGG	1 cut(s)	838
BseGI	GGATG	1 cut(s)	378
BseLI	CCNNNNNNNGG	2 cut(s)	355, 757
BseMII	CTCAG	4 cut(s)	73, 240, 650, 732
BseNI	ACTGG	3 cut(s)	349, 386, 751
BseRI	GAGGAG	1 cut(s)	107
BseSI	GKGCMC	1 cut(s)	838
BseXI	GCAGC	3 cut(s)	145, 539, 799
BshFI	GGCC	3 cut(s)	51, 261, 836
BsiHKAI	GWGCWC	1 cut(s)	60
BslI	CCNNNNNNNGG	2 cut(s)	355, 757
BsmAI	GTCTC	1 cut(s)	206
BsnI	GGCC	3 cut(s)	51, 261, 836
Bsp120I	GGGCCC	1 cut(s)	834
Bsp1286I	GDGCHC	2 cut(s)	60, 838
Bsp143I	GATC	4 cut(s)	82, 96, 107, 161
BspACI	CCGC	3 cut(s)	136, 850, 920
BspANI	GGCC	3 cut(s)	51, 261, 836
BspCNI	CTCAG	4 cut(s)	72, 239, 651, 733
BspHI	TCATGA	1 cut(s)	822
BspLI	GGNNCC	1 cut(s)	836
BspMAI	CTGCAG	1 cut(s)	90
BspPI	GGATC	3 cut(s)	91, 102, 169
BspQI	GCTCTTC	1 cut(s)	290
BsrI	ACTGG	3 cut(s)	349, 386, 751
BssECI	CCNNGG	1 cut(s)	838
BssMI	GATC	4 cut(s)	82, 96, 107, 161
BssT1I	CCWWGG	1 cut(s)	838
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	5 cut(s)	76, 218, 241, 374, 784
Bst6I	CTCTTC	3 cut(s)	150, 191, 290
BstBAI	YACGTR	2 cut(s)	547, 698
BstDEI	CTNAG	6 cut(s)	59, 226, 256, 659, 741, 891
BstF5I	GGATG	1 cut(s)	378
BstHHI	GCGC	1 cut(s)	728
BstKTI	GATC	4 cut(s)	85, 99, 110, 164
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	4 cut(s)	82, 96, 107, 161
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 536, 809
BstNI	CCWGG	1 cut(s)	159
BstNSI	RCATGY	1 cut(s)	726
BstSCI	CCNGG	1 cut(s)	157
BstSFI	CTRYAG	2 cut(s)	86, 804
BstSLI	GKGCMC	1 cut(s)	838
BstV1I	GCAGC	3 cut(s)	145, 539, 799
BstV2I	GAAGAC	2 cut(s)	375, 892
BstX2I	RGATCY	1 cut(s)	96
BstXI	CCANNNNNNTGG	1 cut(s)	906
BstYI	RGATCY	1 cut(s)	96
BsuI	GTATCC	1 cut(s)	906
BsuRI	GGCC	3 cut(s)	51, 261, 836
BtrI	CACGTC	1 cut(s)	902
BtsCI	GGATG	1 cut(s)	378
BtsIMutI	CAGTG	4 cut(s)	67, 223, 237, 758
CaiI	CAGNNNCTG	1 cut(s)	80
CciI	TCATGA	1 cut(s)	822
CfoI	GCGC	1 cut(s)	728
Cfr13I	GGNCC	4 cut(s)	260, 305, 834, 835
Csp6I	GTAC	2 cut(s)	352, 389
CviAII	CATG	3 cut(s)	470, 723, 823
CviQI	GTAC	2 cut(s)	352, 389
DdeI	CTNAG	6 cut(s)	59, 226, 256, 659, 741, 891
DpnI	GATC	4 cut(s)	84, 98, 109, 163
DpnII	GATC	4 cut(s)	82, 96, 107, 161
DraI	TTTAAA	2 cut(s)	430, 858
Eam1104I	CTCTTC	3 cut(s)	150, 191, 290
EarI	CTCTTC	3 cut(s)	150, 191, 290
Ecl136II	GAGCTC	1 cut(s)	58
Eco130I	CCWWGG	1 cut(s)	838
Eco24I	GRGCYC	2 cut(s)	60, 838
Eco47I	GGWCC	1 cut(s)	305
Eco53kI	GAGCTC	1 cut(s)	58
Eco72I	CACGTG	1 cut(s)	698
EcoICRI	GAGCTC	1 cut(s)	58
EcoO109I	RGGNCCY	1 cut(s)	835
EcoRII	CCWGG	1 cut(s)	157
EcoT14I	CCWWGG	1 cut(s)	838
EcoT38I	GRGCYC	2 cut(s)	60, 838
ErhI	CCWWGG	1 cut(s)	838
FaeI	CATG	3 cut(s)	473, 726, 826
FatI	CATG	3 cut(s)	469, 722, 822
FauNDI	CATATG	1 cut(s)	397
Fnu4HI	GCNGC	4 cut(s)	134, 137, 528, 813
FokI	GGATG	1 cut(s)	365
FriOI	GRGCYC	2 cut(s)	60, 838
Fsp4HI	GCNGC	4 cut(s)	134, 137, 528, 813
FspBI	CTAG	1 cut(s)	21
FspI	TGCGCA	1 cut(s)	727
GlaI	GCGC	1 cut(s)	727
GluI	GCNGC	4 cut(s)	134, 137, 528, 813
HaeIII	GGCC	3 cut(s)	51, 261, 836
HhaI	GCGC	1 cut(s)	728
Hin1II	CATG	3 cut(s)	473, 726, 826
Hin6I	GCGC	1 cut(s)	726
HinP1I	GCGC	1 cut(s)	726
HinfI	GANTC	5 cut(s)	65, 199, 550, 655, 913
HphI	GGTGA	3 cut(s)	471, 545, 922
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188I	TCNGA	3 cut(s)	229, 501, 660
Hpy188III	TCNNGA	1 cut(s)	823
Hpy8I	GTNNAC	1 cut(s)	346
Hpy99I	CGWCG	1 cut(s)	906
HpyAV	CCTTC	3 cut(s)	135, 166, 871
HpyCH4III	ACNGT	5 cut(s)	76, 218, 241, 374, 784
HpyCH4IV	ACGT	4 cut(s)	433, 546, 697, 901
HpyCH4V	TGCA	4 cut(s)	88, 473, 527, 773
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 536, 809
HpyF3I	CTNAG	6 cut(s)	59, 226, 256, 659, 741, 891
HpySE526I	ACGT	4 cut(s)	433, 546, 697, 901
Hsp92II	CATG	3 cut(s)	473, 726, 826
HspAI	GCGC	1 cut(s)	726
Kzo9I	GATC	4 cut(s)	82, 96, 107, 161
LguI	GCTCTTC	1 cut(s)	290
LmnI	GCTCC	1 cut(s)	519
Lsp1109I	GCAGC	3 cut(s)	145, 539, 799
MaeI	CTAG	1 cut(s)	21
MaeII	ACGT	4 cut(s)	433, 546, 697, 901
MaeIII	GTNAC	3 cut(s)	16, 62, 718
MalI	GATC	4 cut(s)	84, 98, 109, 163
MboI	GATC	4 cut(s)	82, 96, 107, 161
MboII	GAAGA	8 cut(s)	137, 208, 277, 280, 328, 380, 601, 897
MfeI	CAATTG	1 cut(s)	829
MflI	RGATCY	1 cut(s)	96
MhlI	GDGCHC	2 cut(s)	60, 838
MluCI	AATT	3 cut(s)	502, 730, 829
MlyI	GAGTC	2 cut(s)	59, 208
MnlI	CCTC	8 cut(s)	85, 194, 199, 487, 492, 590, 645, 674
MseI	TTAA	4 cut(s)	249, 429, 765, 857
MslI	CAYNNNNRTG	2 cut(s)	242, 904
MspA1I	CMGCKG	1 cut(s)	136
MspR9I	CCNGG	1 cut(s)	159
MunI	CAATTG	1 cut(s)	829
MvaI	CCWGG	1 cut(s)	159
MwoI	GCNNNNNNNGC	3 cut(s)	77, 536, 809
NdeI	CATATG	1 cut(s)	397
NdeII	GATC	4 cut(s)	82, 96, 107, 161
NlaIII	CATG	3 cut(s)	473, 726, 826
NlaIV	GGNNCC	1 cut(s)	836
NmuCI	GTSAC	2 cut(s)	62, 718
NsbI	TGCGCA	1 cut(s)	727
NspI	RCATGY	1 cut(s)	726
OliI	CACNNNNGTG	1 cut(s)	242
PagI	TCATGA	1 cut(s)	822
PciSI	GCTCTTC	1 cut(s)	290
PfeI	GAWTC	3 cut(s)	550, 655, 913
PflFI	GACNNNGTC	1 cut(s)	374
PflMI	CCANNNNNTGG	2 cut(s)	355, 757
PkrI	GCNGC	4 cut(s)	135, 138, 529, 814
PleI	GAGTC	2 cut(s)	59, 207
PmaCI	CACGTG	1 cut(s)	698
PmlI	CACGTG	1 cut(s)	698
PpsI	GAGTC	2 cut(s)	59, 207
Ppu21I	YACGTR	2 cut(s)	547, 698
Psp124BI	GAGCTC	1 cut(s)	60
Psp6I	CCWGG	1 cut(s)	157
PspCI	CACGTG	1 cut(s)	698
PspGI	CCWGG	1 cut(s)	157
PspN4I	GGNNCC	1 cut(s)	836
PspOMI	GGGCCC	1 cut(s)	834
PspPI	GGNCC	4 cut(s)	260, 305, 834, 835
PstI	CTGCAG	1 cut(s)	90
PstNI	CAGNNNCTG	1 cut(s)	80
PsuI	RGATCY	1 cut(s)	96
PsyI	GACNNNGTC	1 cut(s)	374
RsaI	GTAC	2 cut(s)	353, 390
RsaNI	GTAC	2 cut(s)	352, 389
RseI	CAYNNNNRTG	2 cut(s)	242, 904
SacI	GAGCTC	1 cut(s)	60
SapI	GCTCTTC	1 cut(s)	290
SaqAI	TTAA	4 cut(s)	249, 429, 765, 857
SatI	GCNGC	4 cut(s)	134, 137, 528, 813
Sau3AI	GATC	4 cut(s)	82, 96, 107, 161
Sau96I	GGNCC	4 cut(s)	260, 305, 834, 835
ScaI	AGTACT	1 cut(s)	353
SchI	GAGTC	2 cut(s)	59, 208
ScrFI	CCNGG	1 cut(s)	159
SduI	GDGCHC	2 cut(s)	60, 838
SfcI	CTRYAG	2 cut(s)	86, 804
SinI	GGWCC	1 cut(s)	305
SmiMI	CAYNNNNRTG	2 cut(s)	242, 904
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
Sse9I	AATT	3 cut(s)	502, 730, 829
SsiI	CCGC	3 cut(s)	136, 850, 920
SspI	AATATT	2 cut(s)	715, 769
SspMI	CTAG	1 cut(s)	21
SstI	GAGCTC	1 cut(s)	60
StyD4I	CCNGG	1 cut(s)	157
StyI	CCWWGG	1 cut(s)	838
TaaI	ACNGT	5 cut(s)	76, 218, 241, 374, 784
TaiI	ACGT	4 cut(s)	436, 549, 700, 904
TaqI	TCGA	1 cut(s)	904
TasI	AATT	3 cut(s)	502, 730, 829
TatI	WGTACW	2 cut(s)	351, 388
TauI	GCSGC	1 cut(s)	139
TfiI	GAWTC	3 cut(s)	550, 655, 913
Tru1I	TTAA	4 cut(s)	249, 429, 765, 857
Tru9I	TTAA	4 cut(s)	249, 429, 765, 857
TscAI	CASTG	4 cut(s)	67, 223, 244, 758
TseFI	GTSAC	2 cut(s)	62, 718
TseI	GCWGC	3 cut(s)	133, 527, 812
Tsp45I	GTSAC	2 cut(s)	62, 718
TspDTI	ATGAA	3 cut(s)	17, 442, 602
TspGWI	ACGGA	1 cut(s)	897
TspRI	CASTG	4 cut(s)	67, 223, 244, 758
Tth111I	GACNNNGTC	1 cut(s)	374
Van91I	CCANNNNNTGG	2 cut(s)	355, 757
VpaK11BI	GGWCC	1 cut(s)	305
XceI	RCATGY	1 cut(s)	726
XcmI	CCANNNNNNNNNTGG	1 cut(s)	590
XspI	CTAG	1 cut(s)	21
ZrmI	AGTACT	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.