MD07G1197900.v1.1

Very-long-chain enoyl-CoA

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Forward (+)
27637280 .. 27641708
4429 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1197900.v1.1.491

Sequence Viewer

Length: 1059 bp
ATGAAGGTGACCGTAGTTTCGCGGAGTGGCCGAGAAGTTGTCAAGGGCGGCCTTGAGCTCAGCGATTCTGCCACAGTAGCTGATCTGCAGGATGCAATCCATAAGCGAACCAAAAAGTTCTATCCTGCAAGACAGCGGCTTACTCTCCCCGTCCAACCAGGATCAAAAGAGAGGCCGGTTGTCCTTAGCTACAAGAAGAGTCTCCAAGATTACATCAGCGGAAACTCAGACAACCTAACTGTGGTGTTCAAGGACCTAGGTCCACAAGTGTCATACAGAACACTCTTCTTCTTTGAGTATTTGGGCCCTTTGATCCTTTACCCCATCTTTTACTACTTCCCTGTTTACGATTATTTGGGCTTCAAAGGAGACCGTGTCATCCACCCTGTCCAGACATATGCCCTATACTACTGGTGCTTCCACTACTTCAAACGTATTATGGAAACATTTTTTGGCCGAAGGGGTAGAGGAAGACCTAGGAAAACTTTGGAAGAGACTCTAAGAAAAGACTTAGAGTACTTGGATCGAACGGAAGACATGACACAAAACCGAGCGCAATGGCGTTCTAGGATTCATATAGCCGACCCCACTTACCATGCAACCTCACCACTCTCCAATGTATTCCGGAATTGTGCTTATTATTGGAGCTTTGGTGCTTTCATAGCTTACTACCTGAATCACCCGCTTTACACCCCTGTTAGTGACCTCCAAATGAAGATTGGGTTTGGTATTGGGATAATATGTCAAATCTCAAACTTCTATTGCCATATCCTTTTGAGGAACCTGCGAAGCCCTGATGGGAATGGAGGATATCAGATCCCACGTGGTTTTCTGTTCAATATTGTGACATGTGCAAATTACACTACAGAGATCTATCAGTGGTTGGGCTTCAATATAGCAACACAGACAGTTGCTGGCTATATCTTTCTCATAGTTGCTGCTTCTATCATGACCAATTGGGCCCTTGCCAAGCACCGCCGTCTTAAGAAGATATTTGACGGCAAAGACGGAAGACCCAAGTATCCACGCCGATGGGTGATCCTACCTCCATTCCTGTAG

Protein Analysis

353

Amino Acids

41.1

Weight (kDa)

9.71

Isoelectric Point (pI)

50.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Steroid_dh PF02544 201 - 351 5.2e-29 3-oxo-5-alpha-steroid 4-dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013166)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 792
AccII CGCG 1 cut(s) 22
AccIII TCCGGA 1 cut(s) 624
AciI CCGC 6 cut(s) 22, 48, 136, 219, 683, 976
AclWI GGATC 5 cut(s) 169, 307, 531, 811, 1033
AcoI YGGCCR 2 cut(s) 28, 454
AcvI CACGTG 1 cut(s) 824
AfaI GTAC 1 cut(s) 518
AfiI CCNNNNNNNGG 1 cut(s) 241
AflII CTTAAG 1 cut(s) 983
AflIII ACRYGT 1 cut(s) 848
AgsI TTSAA 5 cut(s) 250, 364, 430, 838, 892
AjnI CCWGG 1 cut(s) 157
AjuI GAANNNNNNNTTGG 2 cut(s) 435, 467
AluBI AGCT 5 cut(s) 58, 80, 189, 648, 665
AluI AGCT 5 cut(s) 58, 80, 189, 648, 665
Alw21I GWGCWC 1 cut(s) 60
Alw26I GTCTC 3 cut(s) 206, 363, 488
AlwI GGATC 5 cut(s) 169, 307, 531, 811, 1033
AlwNI CAGNNNCTG 2 cut(s) 80, 914
Aor13HI TCCGGA 1 cut(s) 624
AoxI GGCC 6 cut(s) 28, 49, 173, 304, 454, 960
ApaI GGGCCC 2 cut(s) 308, 964
ApeKI GCWGC 1 cut(s) 938
ArsI GACNNNNNNTTYG 1 cut(s) 33
AspA2I CCTAGG 2 cut(s) 256, 476
AspLEI GCGC 1 cut(s) 556
AspS9I GGNCC 6 cut(s) 253, 260, 304, 305, 960, 961
AsuHPI GGTGA 4 cut(s) 19, 597, 671, 1048
AvaII GGWCC 2 cut(s) 253, 260
AvrII CCTAGG 2 cut(s) 256, 476
BaeGI GKGCMC 2 cut(s) 308, 964
BaeI ACNNNNGTAYC 2 cut(s) 1004, 1037
BanII GRGCYC 3 cut(s) 60, 308, 964
BbrPI CACGTG 1 cut(s) 824
BbsI GAAGAC 3 cut(s) 478, 540, 1018
Bbv12I GWGCWC 1 cut(s) 60
BbvI GCAGC 1 cut(s) 925
BccI CCATC 3 cut(s) 332, 791, 1026
BceAI ACGGC 2 cut(s) 963, 1015
BciT130I CCWGG 1 cut(s) 159
BciVI GTATCC 1 cut(s) 1032
BcoDI GTCTC 3 cut(s) 206, 363, 488
BfaI CTAG 3 cut(s) 257, 477, 567
BfmI CTRYAG 3 cut(s) 86, 864, 1055
BfrI CTTAAG 1 cut(s) 983
BfuAI ACCTGC 1 cut(s) 792
BfuI GTATCC 1 cut(s) 1032
BglII AGATCT 1 cut(s) 870
BisI GCNGC 3 cut(s) 49, 137, 939
BlnI CCTAGG 2 cut(s) 256, 476
BlpI GCTNAGC 1 cut(s) 59
BlsI GCNGC 3 cut(s) 50, 138, 940
BmcAI AGTACT 1 cut(s) 518
Bme1390I CCNGG 1 cut(s) 159
Bme18I GGWCC 2 cut(s) 253, 260
BmgT120I GGNCC 6 cut(s) 253, 260, 304, 305, 960, 961
BmiI GGNNCC 3 cut(s) 306, 782, 962
BmrFI CCNGG 1 cut(s) 159
BmsI GCATC 1 cut(s) 82
BoxI GACNNNNGTC 1 cut(s) 258
BpiI GAAGAC 3 cut(s) 478, 540, 1018
Bpu10I CCTNAGC 1 cut(s) 185
Bpu1102I GCTNAGC 1 cut(s) 59
BpuEI CTTGAG 1 cut(s) 74
BsaAI YACGTR 1 cut(s) 824
BsaI GGTCTC 1 cut(s) 363
BsaJI CCNNGG 2 cut(s) 256, 476
BsaWI WCCGGW 1 cut(s) 624
BsaXI ACNNNNNCTCC 4 cut(s) 360, 390, 637, 667
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse118I RCCGGY 1 cut(s) 175
Bse1I ACTGG 1 cut(s) 416
Bse3DI GCAATG 1 cut(s) 563
BseAI TCCGGA 1 cut(s) 624
BseBI CCWGG 1 cut(s) 159
BseDI CCNNGG 2 cut(s) 256, 476
BseGI GGATG 2 cut(s) 97, 378
BseLI CCNNNNNNNGG 1 cut(s) 241
BseMI GCAATG 1 cut(s) 563
BseMII CTCAG 2 cut(s) 73, 240
BseNI ACTGG 1 cut(s) 416
BseSI GKGCMC 2 cut(s) 308, 964
BseXI GCAGC 1 cut(s) 925
Bsh1236I CGCG 1 cut(s) 22
BshFI GGCC 6 cut(s) 30, 51, 175, 306, 456, 962
BsiHKAI GWGCWC 1 cut(s) 60
BsiSI CCGG 2 cut(s) 176, 625
BslI CCNNNNNNNGG 1 cut(s) 241
BsmAI GTCTC 3 cut(s) 206, 363, 488
BsnI GGCC 6 cut(s) 30, 51, 175, 306, 456, 962
Bso31I GGTCTC 1 cut(s) 363
Bsp120I GGGCCC 2 cut(s) 304, 960
Bsp1286I GDGCHC 3 cut(s) 60, 308, 964
Bsp13I TCCGGA 1 cut(s) 624
Bsp143I GATC 7 cut(s) 82, 161, 312, 523, 816, 870, 1038
Bsp1720I GCTNAGC 1 cut(s) 59
BspACI CCGC 6 cut(s) 22, 48, 136, 219, 683, 976
BspANI GGCC 6 cut(s) 30, 51, 175, 306, 456, 962
BspCNI CTCAG 2 cut(s) 72, 239
BspEI TCCGGA 1 cut(s) 624
BspFNI CGCG 1 cut(s) 22
BspHI TCATGA 1 cut(s) 948
BspLI GGNNCC 3 cut(s) 306, 782, 962
BspMAI CTGCAG 1 cut(s) 90
BspMI ACCTGC 1 cut(s) 792
BspPI GGATC 5 cut(s) 169, 307, 531, 811, 1033
BspTI CTTAAG 1 cut(s) 983
BspTNI GGTCTC 1 cut(s) 363
BsrDI GCAATG 1 cut(s) 563
BsrFI RCCGGY 1 cut(s) 175
BsrI ACTGG 1 cut(s) 416
BssAI RCCGGY 1 cut(s) 175
BssECI CCNNGG 2 cut(s) 256, 476
BssMI GATC 7 cut(s) 82, 161, 312, 523, 816, 870, 1038
BssT1I CCWWGG 2 cut(s) 256, 476
Bst2UI CCWGG 1 cut(s) 159
Bst4CI ACNGT 5 cut(s) 13, 76, 241, 374, 910
Bst6I CTCTTC 3 cut(s) 191, 290, 486
BstAFI CTTAAG 1 cut(s) 983
BstBAI YACGTR 1 cut(s) 824
BstC8I GCNNGC 1 cut(s) 916
BstDEI CTNAG 5 cut(s) 59, 185, 226, 500, 511
BstEII GGTNACC 1 cut(s) 7
BstF5I GGATG 2 cut(s) 97, 378
BstFNI CGCG 1 cut(s) 22
BstHHI GCGC 1 cut(s) 556
BstKTI GATC 7 cut(s) 85, 164, 315, 526, 819, 873, 1041
BstMAI GTCTC 3 cut(s) 206, 363, 488
BstMBI GATC 7 cut(s) 82, 161, 312, 523, 816, 870, 1038
BstMWI GCNNNNNNNGC 2 cut(s) 77, 662
BstNI CCWGG 1 cut(s) 159
BstNSI RCATGY 1 cut(s) 852
BstPAI GACNNNNGTC 1 cut(s) 258
BstPI GGTNACC 1 cut(s) 7
BstSCI CCNGG 1 cut(s) 157
BstSFI CTRYAG 3 cut(s) 86, 864, 1055
BstSLI GKGCMC 2 cut(s) 308, 964
BstUI CGCG 1 cut(s) 22
BstV1I GCAGC 1 cut(s) 925
BstV2I GAAGAC 3 cut(s) 478, 540, 1018
BstX2I RGATCY 2 cut(s) 816, 870
BstXI CCANNNNNNTGG 1 cut(s) 1032
BstYI RGATCY 2 cut(s) 816, 870
BsuI GTATCC 1 cut(s) 1032
BsuRI GGCC 6 cut(s) 30, 51, 175, 306, 456, 962
BtsCI GGATG 2 cut(s) 97, 378
BtsIMutI CAGTG 1 cut(s) 884
BveI ACCTGC 1 cut(s) 792
Cac8I GCNNGC 1 cut(s) 916
CaiI CAGNNNCTG 2 cut(s) 80, 914
CciI TCATGA 1 cut(s) 948
CfoI GCGC 1 cut(s) 556
Cfr10I RCCGGY 1 cut(s) 175
Cfr13I GGNCC 6 cut(s) 253, 260, 304, 305, 960, 961
Csp6I GTAC 1 cut(s) 517
CviAII CATG 4 cut(s) 538, 596, 849, 949
CviQI GTAC 1 cut(s) 517
DdeI CTNAG 5 cut(s) 59, 185, 226, 500, 511
DpnI GATC 7 cut(s) 84, 163, 314, 525, 818, 872, 1040
DpnII GATC 7 cut(s) 82, 161, 312, 523, 816, 870, 1038
EaeI YGGCCR 2 cut(s) 28, 454
Eam1104I CTCTTC 3 cut(s) 191, 290, 486
EarI CTCTTC 3 cut(s) 191, 290, 486
Ecl136II GAGCTC 1 cut(s) 58
Eco130I CCWWGG 2 cut(s) 256, 476
Eco24I GRGCYC 3 cut(s) 60, 308, 964
Eco31I GGTCTC 1 cut(s) 363
Eco32I GATATC 1 cut(s) 812
Eco47I GGWCC 2 cut(s) 253, 260
Eco53kI GAGCTC 1 cut(s) 58
Eco72I CACGTG 1 cut(s) 824
Eco91I GGTNACC 1 cut(s) 7
EcoICRI GAGCTC 1 cut(s) 58
EcoO109I RGGNCCY 3 cut(s) 253, 305, 961
EcoO65I GGTNACC 1 cut(s) 7
EcoRII CCWGG 1 cut(s) 157
EcoRV GATATC 1 cut(s) 812
EcoT14I CCWWGG 2 cut(s) 256, 476
EcoT38I GRGCYC 3 cut(s) 60, 308, 964
ErhI CCWWGG 2 cut(s) 256, 476
FaeI CATG 4 cut(s) 541, 599, 852, 952
FatI CATG 4 cut(s) 537, 595, 848, 948
FauI CCCGC 1 cut(s) 690
FauNDI CATATG 1 cut(s) 397
Fnu4HI GCNGC 3 cut(s) 49, 137, 939
FokI GGATG 2 cut(s) 104, 365
FriOI GRGCYC 3 cut(s) 60, 308, 964
Fsp4HI GCNGC 3 cut(s) 49, 137, 939
FspBI CTAG 3 cut(s) 257, 477, 567
GlaI GCGC 1 cut(s) 555
GluI GCNGC 3 cut(s) 49, 137, 939
HaeIII GGCC 6 cut(s) 30, 51, 175, 306, 456, 962
HapII CCGG 2 cut(s) 176, 625
HhaI GCGC 1 cut(s) 556
Hin1II CATG 4 cut(s) 541, 599, 852, 952
Hin6I GCGC 1 cut(s) 554
HinP1I GCGC 1 cut(s) 554
HinfI GANTC 5 cut(s) 65, 199, 496, 571, 676
HpaII CCGG 2 cut(s) 176, 625
HphI GGTGA 4 cut(s) 19, 597, 671, 1048
Hpy166II GTNNAC 2 cut(s) 263, 346
Hpy188I TCNGA 2 cut(s) 229, 816
Hpy188III TCNNGA 3 cut(s) 391, 625, 949
Hpy8I GTNNAC 2 cut(s) 263, 346
HpyAV CCTTC 1 cut(s) 453
HpyCH4III ACNGT 5 cut(s) 13, 76, 241, 374, 910
HpyCH4IV ACGT 2 cut(s) 433, 823
HpyCH4V TGCA 5 cut(s) 88, 95, 128, 599, 854
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 662
HpyF3I CTNAG 5 cut(s) 59, 185, 226, 500, 511
HpySE526I ACGT 2 cut(s) 433, 823
Hsp92II CATG 4 cut(s) 541, 599, 852, 952
HspAI GCGC 1 cut(s) 554
Kpn2I TCCGGA 1 cut(s) 624
Kzo9I GATC 7 cut(s) 82, 161, 312, 523, 816, 870, 1038
LmnI GCTCC 1 cut(s) 645
Lsp1109I GCAGC 1 cut(s) 925
LweI GCATC 1 cut(s) 82
MaeI CTAG 3 cut(s) 257, 477, 567
MaeII ACGT 2 cut(s) 433, 823
MaeIII GTNAC 3 cut(s) 7, 701, 844
MalI GATC 7 cut(s) 84, 163, 314, 525, 818, 872, 1040
MboI GATC 7 cut(s) 82, 161, 312, 523, 816, 870, 1038
MboII GAAGA 9 cut(s) 208, 277, 280, 483, 503, 545, 727, 1000, 1023
MfeI CAATTG 1 cut(s) 955
MflI RGATCY 2 cut(s) 816, 870
MhlI GDGCHC 3 cut(s) 60, 308, 964
MluCI AATT 3 cut(s) 628, 856, 955
MlyI GAGTC 2 cut(s) 208, 490
MmeI TCCRAC 1 cut(s) 178
MnlI CCTC 7 cut(s) 165, 461, 613, 716, 771, 800, 1056
MroI TCCGGA 1 cut(s) 624
MseI TTAA 1 cut(s) 984
MslI CAYNNNNRTG 1 cut(s) 1030
MspA1I CMGCKG 2 cut(s) 136, 219
MspCI CTTAAG 1 cut(s) 983
MspI CCGG 2 cut(s) 176, 625
MspR9I CCNGG 1 cut(s) 159
MunI CAATTG 1 cut(s) 955
MvaI CCWGG 1 cut(s) 159
MvnI CGCG 1 cut(s) 22
MwoI GCNNNNNNNGC 2 cut(s) 77, 662
NdeI CATATG 1 cut(s) 397
NdeII GATC 7 cut(s) 82, 161, 312, 523, 816, 870, 1038
NlaIII CATG 4 cut(s) 541, 599, 852, 952
NlaIV GGNNCC 3 cut(s) 306, 782, 962
NmeAIII GCCGAG 1 cut(s) 56
NmuCI GTSAC 3 cut(s) 7, 701, 844
NspI RCATGY 1 cut(s) 852
PagI TCATGA 1 cut(s) 948
PciI ACATGT 1 cut(s) 848
PfeI GAWTC 3 cut(s) 65, 571, 676
PflFI GACNNNGTC 1 cut(s) 374
PkrI GCNGC 3 cut(s) 50, 138, 940
PleI GAGTC 2 cut(s) 207, 490
PmaCI CACGTG 1 cut(s) 824
PmlI CACGTG 1 cut(s) 824
PpsI GAGTC 2 cut(s) 207, 490
Ppu21I YACGTR 1 cut(s) 824
PpuMI RGGWCCY 1 cut(s) 253
PscI ACATGT 1 cut(s) 848
PshAI GACNNNNGTC 1 cut(s) 258
Psp124BI GAGCTC 1 cut(s) 60
Psp5II RGGWCCY 1 cut(s) 253
Psp6I CCWGG 1 cut(s) 157
PspCI CACGTG 1 cut(s) 824
PspEI GGTNACC 1 cut(s) 7
PspGI CCWGG 1 cut(s) 157
PspN4I GGNNCC 3 cut(s) 306, 782, 962
PspOMI GGGCCC 2 cut(s) 304, 960
PspPI GGNCC 6 cut(s) 253, 260, 304, 305, 960, 961
PspPPI RGGWCCY 1 cut(s) 253
PstI CTGCAG 1 cut(s) 90
PstNI CAGNNNCTG 2 cut(s) 80, 914
PsuI RGATCY 2 cut(s) 816, 870
PsyI GACNNNGTC 1 cut(s) 374
RsaI GTAC 1 cut(s) 518
RsaNI GTAC 1 cut(s) 517
RseI CAYNNNNRTG 1 cut(s) 1030
SacI GAGCTC 1 cut(s) 60
SaqAI TTAA 1 cut(s) 984
SatI GCNGC 3 cut(s) 49, 137, 939
Sau3AI GATC 7 cut(s) 82, 161, 312, 523, 816, 870, 1038
Sau96I GGNCC 6 cut(s) 253, 260, 304, 305, 960, 961
ScaI AGTACT 1 cut(s) 518
SchI GAGTC 2 cut(s) 208, 490
ScrFI CCNGG 1 cut(s) 159
SduI GDGCHC 3 cut(s) 60, 308, 964
SfaNI GCATC 1 cut(s) 82
SfcI CTRYAG 3 cut(s) 86, 864, 1055
SinI GGWCC 2 cut(s) 253, 260
SmiMI CAYNNNNRTG 1 cut(s) 1030
SmlI CTYRAG 2 cut(s) 53, 983
SmoI CTYRAG 2 cut(s) 53, 983
Sse9I AATT 3 cut(s) 628, 856, 955
SsiI CCGC 6 cut(s) 22, 48, 136, 219, 683, 976
SspI AATATT 1 cut(s) 841
SspMI CTAG 3 cut(s) 257, 477, 567
SstI GAGCTC 1 cut(s) 60
StyD4I CCNGG 1 cut(s) 157
StyI CCWWGG 2 cut(s) 256, 476
TaaI ACNGT 5 cut(s) 13, 76, 241, 374, 910
TaiI ACGT 2 cut(s) 436, 826
TaqI TCGA 1 cut(s) 526
TasI AATT 3 cut(s) 628, 856, 955
TatI WGTACW 1 cut(s) 516
TauI GCSGC 2 cut(s) 51, 139
TfiI GAWTC 3 cut(s) 65, 571, 676
Tru1I TTAA 1 cut(s) 984
Tru9I TTAA 1 cut(s) 984
TscAI CASTG 1 cut(s) 884
TseFI GTSAC 3 cut(s) 7, 701, 844
TseI GCWGC 1 cut(s) 938
Tsp45I GTSAC 3 cut(s) 7, 701, 844
TspDTI ATGAA 4 cut(s) 17, 563, 649, 728
TspGWI ACGGA 2 cut(s) 545, 1023
TspRI CASTG 1 cut(s) 884
Tth111I GACNNNGTC 1 cut(s) 374
Vha464I CTTAAG 1 cut(s) 983
VpaK11BI GGWCC 2 cut(s) 253, 260
XceI RCATGY 1 cut(s) 852
XcmI CCANNNNNNNNNTGG 1 cut(s) 716
XmaJI CCTAGG 2 cut(s) 256, 476
XspI CTAG 3 cut(s) 257, 477, 567
ZrmI AGTACT 1 cut(s) 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.