Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig01103

Orthogroup ID

OG0013166

Physical Location & Seq

Genomic Coordinates Reverse (-)

8573 .. 11229

Gene Structure 2657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G023880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGAAGGTCACCGTGGTTACTAGGAGTGGTAGAGAGCTTTTCAAGGGTGGCCTCGAGCTCAGTGACTCTGCCACTGTTGCTGATCTGCAGGAGGAGATCCATAAGCGATCCAAAAAGTTCTATCCTTCAAGGCAGCGGCTTACTCTTCCTGTCAAACCAGGATCAAAAGAGAAGGCAGTTGTCCTCTCCTCCAAGAAGAGTCTCAAAGATTATTACAGTGGAAACTCAGACAACTTAACTGTGGTGTTTAAGGACTTAGGCCCACAAGTTGAATACCGAACGCTCTTCTTCTTTGAATATATTGGTCCTTTGCTCATTTATCCCATATTTTACTTCTTCCCTGTTTACCAGTACTTGGGCTTCAAAGGAGACCGTGTCATCCACTCAGTACAGACATATGCTCTATATTATTATTGCTTCCACTACTTTAAACGTATTATGGAAACATTTTTCATACATAGGTTCAGCCATGCAACCTCACCTCTCTCCTATGTATCTCGGAATTGTGCTTATTATTGGAGCTTTGCGGCACTTATGGCTTACTACGTGAATCACCCACTTTACACCCCTGTTAGCGACCTCCAAATGAAGATTGGGTTTGGTTTTGGGATAATATGTCAAATCGCAAACTTATATTGTCATATTCTATTGAGGAATCTGAGGAGCCCTGATGGAAGTGGAGGCTATCAAATACCATGTGGTTTTCTATTCAATATAGTGACATGCGCAAATTACACAACTGAGATTTATCAGTGGTTGGGCTTTAATATTGCAACGCAGACGGTTGCTGGTTATCTTTTTGCTGTAGTTGCTGCTTCTATCATGACCAATTGGGCCCTTGGAAAGCACCGCCGTTTAAAGAAGCTATTTGATGGGAAGGACGGAAGACCTAAGTATCCACGTCGATGGGTGATTCTACCACCATTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009653 GO:0009888 GO:0009922 GO:0009923 GO:0009987 GO:0010025 GO:0010026 GO:0010090 GO:0010091 GO:0010166 GO:0010927 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016053 GO:0016491 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0022607 GO:0030030 GO:0030031 GO:0030154 GO:0030176 GO:0030497 GO:0031224 GO:0031227 GO:0031984 GO:0032501 GO:0032502 GO:0032787 GO:0032989 GO:0032991 GO:0042175 GO:0042335 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048468 GO:0048646 GO:0048856 GO:0048869 GO:0055114 GO:0071704 GO:0071840 GO:0071944 GO:0072330 GO:0090558 GO:0090626 GO:0098796 GO:0098827 GO:1901564 GO:1901568 GO:1901570 GO:1901576 GO:1902494 GO:1905499 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00062 ko01040 ko01110 ko01212 map00062 map01040 map01110 map01212

Pfam Domains

Protein Families

Steroid_dh

Protein Analysis

310

Amino Acids

35.9

Weight (kDa)

9.56

Isoelectric Point (pI)

47.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Steroid_dh	PF02544	159 - 309	2e-25	3-oxo-5-alpha-steroid 4-dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55360
fragaria_vesca	FvH4_7g22400
malus_domestica	MD01G1133600.v1.1 MD07G1197900.v1.1
prunus_persica	Prupe.2G234700_v2.0.a1
pyrus_communis	pycom01g15440 pycom07g18510
rosa_chinensis	RchiOBHm_Chr1g0367031
rosa_laevigata	RLG00000027305
rosa_multiflora	Rmu_sc0013700.1_g000003
rosa_roxburghii	Rroxscaffold_4G00289690
rosa_rugosa	Rorug01G0334100
rosa_samantha	Rh1AG340800 Rh1BG301300 Rh1CG317500 Rh1DG333700
rosa_wichuraiana	Rw0G023880 Rw1G030270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	727
AccB7I	CCANNNNNTGG	1 cut(s)	355
AciI	CCGC	3 cut(s)	136, 527, 850
AclWI	GGATC	3 cut(s)	91, 102, 169
AfaI	GTAC	2 cut(s)	353, 390
AfiI	CCNNNNNNNGG	1 cut(s)	355
AgsI	TTSAA	6 cut(s)	43, 129, 272, 296, 364, 712
AjiI	CACGTC	1 cut(s)	902
AjnI	CCWGG	1 cut(s)	157
AluBI	AGCT	4 cut(s)	37, 58, 522, 865
AluI	AGCT	4 cut(s)	37, 58, 522, 865
Alw21I	GWGCWC	1 cut(s)	60
Alw26I	GTCTC	2 cut(s)	206, 363
AlwI	GGATC	3 cut(s)	91, 102, 169
Ama87I	CYCGRG	1 cut(s)	53
AoxI	GGCC	3 cut(s)	49, 259, 834
ApaI	GGGCCC	1 cut(s)	838
ApeKI	GCWGC	2 cut(s)	133, 812
AspLEI	GCGC	1 cut(s)	728
AspS9I	GGNCC	4 cut(s)	260, 305, 834, 835
AsuHPI	GGTGA	3 cut(s)	471, 545, 922
AvaI	CYCGRG	1 cut(s)	53
AvaII	GGWCC	1 cut(s)	305
BaeGI	GKGCMC	1 cut(s)	838
BaeI	ACNNNNGTAYC	2 cut(s)	878, 911
BanII	GRGCYC	3 cut(s)	60, 668, 838
BarI	GAAGNNNNNNTAC	2 cut(s)	344, 376
BbsI	GAAGAC	1 cut(s)	892
Bbv12I	GWGCWC	1 cut(s)	60
BbvI	GCAGC	2 cut(s)	145, 799
BccI	CCATC	3 cut(s)	665, 866, 900
BceAI	ACGGC	1 cut(s)	837
BciT130I	CCWGG	1 cut(s)	159
BciVI	GTATCC	1 cut(s)	906
BcoDI	GTCTC	2 cut(s)	206, 363
BfaI	CTAG	1 cut(s)	21
BfmI	CTRYAG	2 cut(s)	86, 804
BfuI	GTATCC	1 cut(s)	906
BisI	GCNGC	4 cut(s)	134, 137, 528, 813
BlsI	GCNGC	4 cut(s)	135, 138, 529, 814
BmcAI	AGTACT	1 cut(s)	353
Bme1390I	CCNGG	1 cut(s)	159
Bme18I	GGWCC	1 cut(s)	305
BmeT110I	CYCGRG	1 cut(s)	53
BmgBI	CACGTC	1 cut(s)	902
BmgT120I	GGNCC	4 cut(s)	260, 305, 834, 835
BmiI	GGNNCC	2 cut(s)	665, 836
BmrFI	CCNGG	1 cut(s)	159
BpiI	GAAGAC	1 cut(s)	892
BsaAI	YACGTR	1 cut(s)	547
BsaI	GGTCTC	1 cut(s)	363
BsaJI	CCNNGG	2 cut(s)	12, 838
BsaXI	ACNNNNNCTCC	2 cut(s)	360, 390
Bsc4I	CCNNNNNNNGG	1 cut(s)	355
Bse1I	ACTGG	1 cut(s)	349
BseBI	CCWGG	1 cut(s)	159
BseDI	CCNNGG	2 cut(s)	12, 838
BseGI	GGATG	1 cut(s)	378
BseLI	CCNNNNNNNGG	1 cut(s)	355
BseMII	CTCAG	5 cut(s)	73, 240, 399, 650, 732
BseNI	ACTGG	1 cut(s)	349
BseRI	GAGGAG	3 cut(s)	107, 178, 676
BseSI	GKGCMC	1 cut(s)	838
BseXI	GCAGC	2 cut(s)	145, 799
BshFI	GGCC	3 cut(s)	51, 261, 836
BsiHKAI	GWGCWC	1 cut(s)	60
BsiHKCI	CYCGRG	1 cut(s)	53
BslI	CCNNNNNNNGG	1 cut(s)	355
BsmAI	GTCTC	2 cut(s)	206, 363
BsnI	GGCC	3 cut(s)	51, 261, 836
Bso31I	GGTCTC	1 cut(s)	363
BsoBI	CYCGRG	1 cut(s)	53
Bsp120I	GGGCCC	1 cut(s)	834
Bsp1286I	GDGCHC	3 cut(s)	60, 668, 838
Bsp143I	GATC	4 cut(s)	82, 96, 107, 161
BspACI	CCGC	3 cut(s)	136, 527, 850
BspANI	GGCC	3 cut(s)	51, 261, 836
BspCNI	CTCAG	5 cut(s)	72, 239, 398, 651, 733
BspHI	TCATGA	1 cut(s)	822
BspLI	GGNNCC	2 cut(s)	665, 836
BspMAI	CTGCAG	1 cut(s)	90
BspPI	GGATC	3 cut(s)	91, 102, 169
BspQI	GCTCTTC	1 cut(s)	290
BspTNI	GGTCTC	1 cut(s)	363
BsrI	ACTGG	1 cut(s)	349
BssECI	CCNNGG	2 cut(s)	12, 838
BssMI	GATC	4 cut(s)	82, 96, 107, 161
BssT1I	CCWWGG	1 cut(s)	838
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	6 cut(s)	13, 76, 218, 241, 374, 784
Bst6I	CTCTTC	3 cut(s)	150, 191, 290
BstBAI	YACGTR	1 cut(s)	547
BstDEI	CTNAG	7 cut(s)	59, 226, 256, 385, 659, 741, 891
BstDSI	CCRYGG	1 cut(s)	12
BstEII	GGTNACC	1 cut(s)	7
BstF5I	GGATG	1 cut(s)	378
BstHHI	GCGC	1 cut(s)	728
BstKTI	GATC	4 cut(s)	85, 99, 110, 164
BstMAI	GTCTC	2 cut(s)	206, 363
BstMBI	GATC	4 cut(s)	82, 96, 107, 161
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 536, 809
BstNI	CCWGG	1 cut(s)	159
BstNSI	RCATGY	1 cut(s)	726
BstPI	GGTNACC	1 cut(s)	7
BstSCI	CCNGG	1 cut(s)	157
BstSFI	CTRYAG	2 cut(s)	86, 804
BstSLI	GKGCMC	1 cut(s)	838
BstV1I	GCAGC	2 cut(s)	145, 799
BstV2I	GAAGAC	1 cut(s)	892
BstX2I	RGATCY	1 cut(s)	96
BstXI	CCANNNNNNTGG	1 cut(s)	906
BstYI	RGATCY	1 cut(s)	96
BsuI	GTATCC	1 cut(s)	906
BsuRI	GGCC	3 cut(s)	51, 261, 836
BtgI	CCRYGG	1 cut(s)	12
BtrI	CACGTC	1 cut(s)	902
BtsCI	GGATG	1 cut(s)	378
BtsIMutI	CAGTG	4 cut(s)	67, 72, 223, 758
CciI	TCATGA	1 cut(s)	822
CfoI	GCGC	1 cut(s)	728
Cfr13I	GGNCC	4 cut(s)	260, 305, 834, 835
Csp6I	GTAC	2 cut(s)	352, 389
CspCI	CAANNNNNGTGG	1 cut(s)	909
CviAII	CATG	4 cut(s)	470, 696, 723, 823
CviQI	GTAC	2 cut(s)	352, 389
DdeI	CTNAG	7 cut(s)	59, 226, 256, 385, 659, 741, 891
DpnI	GATC	4 cut(s)	84, 98, 109, 163
DpnII	GATC	4 cut(s)	82, 96, 107, 161
DraI	TTTAAA	2 cut(s)	430, 858
Eam1104I	CTCTTC	3 cut(s)	150, 191, 290
EarI	CTCTTC	3 cut(s)	150, 191, 290
Ecl136II	GAGCTC	1 cut(s)	58
Eco130I	CCWWGG	1 cut(s)	838
Eco24I	GRGCYC	3 cut(s)	60, 668, 838
Eco31I	GGTCTC	1 cut(s)	363
Eco47I	GGWCC	1 cut(s)	305
Eco53kI	GAGCTC	1 cut(s)	58
Eco88I	CYCGRG	1 cut(s)	53
Eco91I	GGTNACC	1 cut(s)	7
EcoICRI	GAGCTC	1 cut(s)	58
EcoO109I	RGGNCCY	1 cut(s)	835
EcoO65I	GGTNACC	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	157
EcoT14I	CCWWGG	1 cut(s)	838
EcoT38I	GRGCYC	3 cut(s)	60, 668, 838
ErhI	CCWWGG	1 cut(s)	838
FaeI	CATG	4 cut(s)	473, 699, 726, 826
FatI	CATG	4 cut(s)	469, 695, 722, 822
FauNDI	CATATG	1 cut(s)	397
Fnu4HI	GCNGC	4 cut(s)	134, 137, 528, 813
FokI	GGATG	1 cut(s)	365
FriOI	GRGCYC	3 cut(s)	60, 668, 838
Fsp4HI	GCNGC	4 cut(s)	134, 137, 528, 813
FspBI	CTAG	1 cut(s)	21
FspI	TGCGCA	1 cut(s)	727
GlaI	GCGC	1 cut(s)	727
GluI	GCNGC	4 cut(s)	134, 137, 528, 813
HaeIII	GGCC	3 cut(s)	51, 261, 836
HhaI	GCGC	1 cut(s)	728
Hin1II	CATG	4 cut(s)	473, 699, 726, 826
Hin6I	GCGC	1 cut(s)	726
HinP1I	GCGC	1 cut(s)	726
HinfI	GANTC	5 cut(s)	65, 199, 550, 655, 913
HphI	GGTGA	3 cut(s)	471, 545, 922
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188I	TCNGA	3 cut(s)	229, 501, 660
Hpy188III	TCNNGA	1 cut(s)	823
Hpy8I	GTNNAC	1 cut(s)	346
Hpy99I	CGWCG	1 cut(s)	906
HpyAV	CCTTC	3 cut(s)	135, 166, 871
HpyCH4III	ACNGT	6 cut(s)	13, 76, 218, 241, 374, 784
HpyCH4IV	ACGT	3 cut(s)	433, 546, 901
HpyCH4V	TGCA	3 cut(s)	88, 473, 773
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 536, 809
HpyF3I	CTNAG	7 cut(s)	59, 226, 256, 385, 659, 741, 891
HpySE526I	ACGT	3 cut(s)	433, 546, 901
Hsp92II	CATG	4 cut(s)	473, 699, 726, 826
HspAI	GCGC	1 cut(s)	726
Kzo9I	GATC	4 cut(s)	82, 96, 107, 161
LguI	GCTCTTC	1 cut(s)	290
LmnI	GCTCC	2 cut(s)	519, 663
LpnPI	CCDG	9 cut(s)	74, 144, 162, 171, 354, 362, 582, 681, 774
Lsp1109I	GCAGC	2 cut(s)	145, 799
MaeI	CTAG	1 cut(s)	21
MaeII	ACGT	3 cut(s)	433, 546, 901
MaeIII	GTNAC	4 cut(s)	7, 16, 62, 718
MalI	GATC	4 cut(s)	84, 98, 109, 163
MboI	GATC	4 cut(s)	82, 96, 107, 161
MboII	GAAGA	7 cut(s)	137, 208, 277, 280, 328, 601, 897
MfeI	CAATTG	1 cut(s)	829
MflI	RGATCY	1 cut(s)	96
MhlI	GDGCHC	3 cut(s)	60, 668, 838
MluCI	AATT	3 cut(s)	502, 730, 829
MlyI	GAGTC	2 cut(s)	59, 208
MseI	TTAA	5 cut(s)	236, 249, 429, 765, 857
MslI	CAYNNNNRTG	1 cut(s)	904
MspA1I	CMGCKG	1 cut(s)	136
MspR9I	CCNGG	1 cut(s)	159
MunI	CAATTG	1 cut(s)	829
MvaI	CCWGG	1 cut(s)	159
MwoI	GCNNNNNNNGC	3 cut(s)	77, 536, 809
NdeI	CATATG	1 cut(s)	397
NdeII	GATC	4 cut(s)	82, 96, 107, 161
NlaIII	CATG	4 cut(s)	473, 699, 726, 826
NlaIV	GGNNCC	2 cut(s)	665, 836
NmuCI	GTSAC	3 cut(s)	7, 62, 718
NsbI	TGCGCA	1 cut(s)	727
NspI	RCATGY	1 cut(s)	726
PaeR7I	CTCGAG	1 cut(s)	53
PagI	TCATGA	1 cut(s)	822
PciSI	GCTCTTC	1 cut(s)	290
PfeI	GAWTC	3 cut(s)	550, 655, 913
PflFI	GACNNNGTC	1 cut(s)	374
PflMI	CCANNNNNTGG	1 cut(s)	355
PkrI	GCNGC	4 cut(s)	135, 138, 529, 814
PleI	GAGTC	2 cut(s)	59, 207
PpsI	GAGTC	2 cut(s)	59, 207
Ppu21I	YACGTR	1 cut(s)	547
Psp124BI	GAGCTC	1 cut(s)	60
Psp6I	CCWGG	1 cut(s)	157
PspEI	GGTNACC	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	157
PspN4I	GGNNCC	2 cut(s)	665, 836
PspOMI	GGGCCC	1 cut(s)	834
PspPI	GGNCC	4 cut(s)	260, 305, 834, 835
PspXI	VCTCGAGB	1 cut(s)	53
PstI	CTGCAG	1 cut(s)	90
PsuI	RGATCY	1 cut(s)	96
PsyI	GACNNNGTC	1 cut(s)	374
RsaI	GTAC	2 cut(s)	353, 390
RsaNI	GTAC	2 cut(s)	352, 389
RseI	CAYNNNNRTG	1 cut(s)	904
SacI	GAGCTC	1 cut(s)	60
SapI	GCTCTTC	1 cut(s)	290
SaqAI	TTAA	5 cut(s)	236, 249, 429, 765, 857
SatI	GCNGC	4 cut(s)	134, 137, 528, 813
Sau3AI	GATC	4 cut(s)	82, 96, 107, 161
Sau96I	GGNCC	4 cut(s)	260, 305, 834, 835
ScaI	AGTACT	1 cut(s)	353
SchI	GAGTC	2 cut(s)	59, 208
ScrFI	CCNGG	1 cut(s)	159
SduI	GDGCHC	3 cut(s)	60, 668, 838
SfcI	CTRYAG	2 cut(s)	86, 804
Sfr274I	CTCGAG	1 cut(s)	53
SinI	GGWCC	1 cut(s)	305
SlaI	CTCGAG	1 cut(s)	53
SmiMI	CAYNNNNRTG	1 cut(s)	904
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
Sse9I	AATT	3 cut(s)	502, 730, 829
SsiI	CCGC	3 cut(s)	136, 527, 850
SspI	AATATT	1 cut(s)	769
SspMI	CTAG	1 cut(s)	21
SstI	GAGCTC	1 cut(s)	60
StyD4I	CCNGG	1 cut(s)	157
StyI	CCWWGG	1 cut(s)	838
TaaI	ACNGT	6 cut(s)	13, 76, 218, 241, 374, 784
TaiI	ACGT	3 cut(s)	436, 549, 904
TaqI	TCGA	2 cut(s)	54, 904
TasI	AATT	3 cut(s)	502, 730, 829
TatI	WGTACW	2 cut(s)	351, 388
TauI	GCSGC	2 cut(s)	139, 530
TfiI	GAWTC	3 cut(s)	550, 655, 913
Tru1I	TTAA	5 cut(s)	236, 249, 429, 765, 857
Tru9I	TTAA	5 cut(s)	236, 249, 429, 765, 857
TscAI	CASTG	4 cut(s)	67, 79, 223, 758
TseFI	GTSAC	3 cut(s)	7, 62, 718
TseI	GCWGC	2 cut(s)	133, 812
Tsp45I	GTSAC	3 cut(s)	7, 62, 718
TspDTI	ATGAA	3 cut(s)	17, 442, 602
TspGWI	ACGGA	1 cut(s)	897
TspRI	CASTG	4 cut(s)	67, 79, 223, 758
Tth111I	GACNNNGTC	1 cut(s)	374
Van91I	CCANNNNNTGG	1 cut(s)	355
VpaK11BI	GGWCC	1 cut(s)	305
XceI	RCATGY	1 cut(s)	726
XcmI	CCANNNNNNNNNTGG	1 cut(s)	590
XhoI	CTCGAG	1 cut(s)	53
XspI	CTAG	1 cut(s)	21
ZrmI	AGTACT	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.