Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0013166

Physical Location & Seq

Genomic Coordinates Forward (+)

25726966 .. 25730325

Gene Structure 3360 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G234700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGAAGGTGACCGTAGTTTCACGGAGTGGTCGAGAAGTTGTTAAGGGTGGCCTTGAGCTCAGTGATTCTGCCACTGTGACTGATCTGCAGGAGGCGATCCATAAGCGAACCAAAAAGTTCTATCCTGCAAGGCAGCGGCTTACTCTCCCCGTCCAACCAGGATCAAAAGAGAGGCCAGTTGTCCTTAACTACAAGAAGAGTCTCAAAGATTATATCAGTGAAAACTCAGACAACTTAACTGTGGTGTTCAAGGACCTAGGCCCACAAGTGTCCTACAAAACACTCTTCTTCTTTGAGTATTTGGGGCCTTTGGTCCTTTATCCCATCTTTTACTACTTCAATGTTTACCAGTACTTGGGCTTCAAAGGAGATCGTGTCATCCGCCCAGTCCAAACATATGCTCTATACTACTGGTGCTTCCACTACTTCAAACGTATTATGGAGACATTTTTTGTACATCGCTTCAGTCATGCAACCTCACCACTCTTGAATGTATTCCGGAATTGTGCGTATTATTGGAGCTTTGGCTCCTACATAGCTTACTATGTGAATCACCCACTTTACACCCCTGTTAGTGACCTCCAAATGAAGATTGGGTTTGCTGTGGGGATAATATTTCAGATCTCAAACTTCTATTGCCATATCCTGCTGAGGAACTTGCGAAGGCCTGATGGAAATGGAGGATATCAAATTCCACGTGGTTTTCTGTTTAATTTTGTGACATGTGCAAATTACACTACAGAGATCTATCAGTGGTTGGGCTTCAATATTGCAACGCAGACAGTTGCTGGTTATGTCTTCCTTGTAGTTGCTGCATCTATCATGACAAATTGGGCCCTTGCAAAGCACCGCCGTTTGAAGAAGATATTTGATGGGAAAGACGGGAGACCGAAGTATCCGCGTCGATGGGTGATACTACCTCCATTCCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009653 GO:0009888 GO:0009922 GO:0009923 GO:0009987 GO:0010025 GO:0010026 GO:0010090 GO:0010091 GO:0010166 GO:0010927 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016053 GO:0016491 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0022607 GO:0030030 GO:0030031 GO:0030154 GO:0030176 GO:0030497 GO:0031224 GO:0031227 GO:0031984 GO:0032501 GO:0032502 GO:0032787 GO:0032989 GO:0032991 GO:0042175 GO:0042335 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048468 GO:0048646 GO:0048856 GO:0048869 GO:0055114 GO:0071704 GO:0071840 GO:0071944 GO:0072330 GO:0090558 GO:0090626 GO:0098796 GO:0098827 GO:1901564 GO:1901568 GO:1901570 GO:1901576 GO:1902494 GO:1905499 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00062 ko01040 ko01110 ko01212 map00062 map01040 map01110 map01212

Pfam Domains

Protein Families

Steroid_dh

Protein Analysis

311

Amino Acids

36.31

Weight (kDa)

9.76

Isoelectric Point (pI)

43.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55360
fragaria_vesca	FvH4_7g22400
malus_domestica	MD01G1133600.v1.1 MD07G1197900.v1.1
prunus_persica	Prupe.2G234700_v2.0.a1
pyrus_communis	pycom01g15440 pycom07g18510
rosa_chinensis	RchiOBHm_Chr1g0367031
rosa_laevigata	RLG00000027305
rosa_multiflora	Rmu_sc0013700.1_g000003
rosa_roxburghii	Rroxscaffold_4G00289690
rosa_rugosa	Rorug01G0334100
rosa_samantha	Rh1AG340800 Rh1BG301300 Rh1CG317500 Rh1DG333700
rosa_wichuraiana	Rw0G023880 Rw1G030270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	355
AccII	CGCG	1 cut(s)	901
AccIII	TCCGGA	1 cut(s)	498
AciI	CCGC	4 cut(s)	136, 382, 850, 899
AclWI	GGATC	2 cut(s)	91, 169
AcsI	RAATTY	1 cut(s)	690
AcuI	CTGAAG	1 cut(s)	448
AcvI	CACGTG	1 cut(s)	698
AdeI	CACNNNGTG	1 cut(s)	26
AfaI	GTAC	2 cut(s)	353, 456
AfiI	CCNNNNNNNGG	1 cut(s)	355
AflIII	ACRYGT	1 cut(s)	722
AgsI	TTSAA	7 cut(s)	250, 340, 364, 430, 490, 766, 859
AjnI	CCWGG	1 cut(s)	157
AluBI	AGCT	3 cut(s)	58, 522, 539
AluI	AGCT	3 cut(s)	58, 522, 539
Alw21I	GWGCWC	1 cut(s)	60
Alw26I	GTCTC	3 cut(s)	206, 437, 880
AlwI	GGATC	2 cut(s)	91, 169
AlwNI	CAGNNNCTG	1 cut(s)	788
Aor13HI	TCCGGA	1 cut(s)	498
AoxI	GGCC	6 cut(s)	49, 173, 259, 305, 665, 834
ApaI	GGGCCC	1 cut(s)	838
ApeKI	GCWGC	2 cut(s)	133, 812
ApoI	RAATTY	1 cut(s)	690
Asp700I	GAANNNNTTC	1 cut(s)	494
AspA2I	CCTAGG	1 cut(s)	256
AspS9I	GGNCC	6 cut(s)	253, 260, 305, 313, 834, 835
AsuHPI	GGTGA	4 cut(s)	19, 471, 545, 922
AvaII	GGWCC	2 cut(s)	253, 313
AvrII	CCTAGG	1 cut(s)	256
BaeGI	GKGCMC	1 cut(s)	838
BaeI	ACNNNNGTAYC	2 cut(s)	878, 911
BanII	GRGCYC	2 cut(s)	60, 838
BarI	GAAGNNNNNNTAC	2 cut(s)	344, 376
BbrPI	CACGTG	1 cut(s)	698
BbsI	GAAGAC	1 cut(s)	790
Bbv12I	GWGCWC	1 cut(s)	60
BbvCI	CCTCAGC	1 cut(s)	650
BbvI	GCAGC	2 cut(s)	145, 799
BccI	CCATC	4 cut(s)	332, 665, 866, 900
BceAI	ACGGC	1 cut(s)	837
BciT130I	CCWGG	1 cut(s)	159
BciVI	GTATCC	1 cut(s)	906
BcoDI	GTCTC	3 cut(s)	206, 437, 880
BfaI	CTAG	1 cut(s)	257
BfmI	CTRYAG	3 cut(s)	86, 738, 929
BfuI	GTATCC	1 cut(s)	906
BglII	AGATCT	2 cut(s)	621, 744
BisI	GCNGC	3 cut(s)	134, 137, 813
BlnI	CCTAGG	1 cut(s)	256
BlsI	GCNGC	3 cut(s)	135, 138, 814
BmcAI	AGTACT	1 cut(s)	353
Bme1390I	CCNGG	1 cut(s)	159
Bme18I	GGWCC	2 cut(s)	253, 313
BmgT120I	GGNCC	6 cut(s)	253, 260, 305, 313, 834, 835
BmiI	GGNNCC	3 cut(s)	306, 529, 836
BmrFI	CCNGG	1 cut(s)	159
BmrI	ACTGGG	1 cut(s)	380
BmsI	GCATC	1 cut(s)	824
BmuI	ACTGGG	1 cut(s)	380
BpiI	GAAGAC	1 cut(s)	790
Bpu10I	CCTNAGC	1 cut(s)	650
BpuEI	CTTGAG	1 cut(s)	74
BsaAI	YACGTR	1 cut(s)	698
BsaI	GGTCTC	1 cut(s)	880
BsaJI	CCNNGG	1 cut(s)	256
BsaWI	WCCGGW	1 cut(s)	498
BsaXI	ACNNNNNCTCC	2 cut(s)	360, 390
Bsc4I	CCNNNNNNNGG	1 cut(s)	355
Bse1I	ACTGG	4 cut(s)	176, 349, 386, 416
BseAI	TCCGGA	1 cut(s)	498
BseBI	CCWGG	1 cut(s)	159
BseDI	CCNNGG	1 cut(s)	256
BseGI	GGATG	1 cut(s)	378
BseLI	CCNNNNNNNGG	1 cut(s)	355
BseMII	CTCAG	3 cut(s)	73, 240, 641
BseNI	ACTGG	4 cut(s)	176, 349, 386, 416
BseSI	GKGCMC	1 cut(s)	838
BseXI	GCAGC	2 cut(s)	145, 799
Bsh1236I	CGCG	1 cut(s)	901
BshFI	GGCC	6 cut(s)	51, 175, 261, 307, 667, 836
BsiHKAI	GWGCWC	1 cut(s)	60
BsiSI	CCGG	1 cut(s)	499
BslI	CCNNNNNNNGG	1 cut(s)	355
BsmAI	GTCTC	3 cut(s)	206, 437, 880
BsnI	GGCC	6 cut(s)	51, 175, 261, 307, 667, 836
Bso31I	GGTCTC	1 cut(s)	880
Bsp120I	GGGCCC	1 cut(s)	834
Bsp1286I	GDGCHC	2 cut(s)	60, 838
Bsp13I	TCCGGA	1 cut(s)	498
Bsp1407I	TGTACA	1 cut(s)	454
Bsp143I	GATC	6 cut(s)	82, 96, 161, 370, 621, 744
BspACI	CCGC	4 cut(s)	136, 382, 850, 899
BspANI	GGCC	6 cut(s)	51, 175, 261, 307, 667, 836
BspCNI	CTCAG	3 cut(s)	72, 239, 642
BspEI	TCCGGA	1 cut(s)	498
BspFNI	CGCG	1 cut(s)	901
BspHI	TCATGA	1 cut(s)	822
BspLI	GGNNCC	3 cut(s)	306, 529, 836
BspMAI	CTGCAG	1 cut(s)	90
BspPI	GGATC	2 cut(s)	91, 169
BspTNI	GGTCTC	1 cut(s)	880
BsrGI	TGTACA	1 cut(s)	454
BsrI	ACTGG	4 cut(s)	176, 349, 386, 416
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	6 cut(s)	82, 96, 161, 370, 621, 744
BssT1I	CCWWGG	1 cut(s)	256
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	4 cut(s)	13, 76, 241, 784
Bst6I	CTCTTC	2 cut(s)	191, 290
BstAUI	TGTACA	1 cut(s)	454
BstBAI	YACGTR	1 cut(s)	698
BstDEI	CTNAG	3 cut(s)	59, 226, 650
BstEII	GGTNACC	1 cut(s)	7
BstF5I	GGATG	1 cut(s)	378
BstFNI	CGCG	1 cut(s)	901
BstKTI	GATC	6 cut(s)	85, 99, 164, 373, 624, 747
BstMAI	GTCTC	3 cut(s)	206, 437, 880
BstMBI	GATC	6 cut(s)	82, 96, 161, 370, 621, 744
BstNI	CCWGG	1 cut(s)	159
BstNSI	RCATGY	1 cut(s)	726
BstPI	GGTNACC	1 cut(s)	7
BstSCI	CCNGG	1 cut(s)	157
BstSFI	CTRYAG	3 cut(s)	86, 738, 929
BstSLI	GKGCMC	1 cut(s)	838
BstUI	CGCG	1 cut(s)	901
BstV1I	GCAGC	2 cut(s)	145, 799
BstV2I	GAAGAC	1 cut(s)	790
BstX2I	RGATCY	2 cut(s)	621, 744
BstYI	RGATCY	2 cut(s)	621, 744
BsuI	GTATCC	1 cut(s)	906
BsuRI	GGCC	6 cut(s)	51, 175, 261, 307, 667, 836
BtgZI	GCGATG	1 cut(s)	443
BtsCI	GGATG	1 cut(s)	378
BtsIMutI	CAGTG	4 cut(s)	67, 72, 223, 758
CaiI	CAGNNNCTG	1 cut(s)	788
CciI	TCATGA	1 cut(s)	822
Cfr13I	GGNCC	6 cut(s)	253, 260, 305, 313, 834, 835
CseI	GACGC	1 cut(s)	890
Csp6I	GTAC	2 cut(s)	352, 455
CviAII	CATG	3 cut(s)	470, 723, 823
CviQI	GTAC	2 cut(s)	352, 455
DdeI	CTNAG	3 cut(s)	59, 226, 650
DpnI	GATC	6 cut(s)	84, 98, 163, 372, 623, 746
DpnII	GATC	6 cut(s)	82, 96, 161, 370, 621, 744
DraIII	CACNNNGTG	1 cut(s)	26
Eam1104I	CTCTTC	2 cut(s)	191, 290
EarI	CTCTTC	2 cut(s)	191, 290
EciI	GGCGGA	1 cut(s)	371
Ecl136II	GAGCTC	1 cut(s)	58
Eco130I	CCWWGG	1 cut(s)	256
Eco147I	AGGCCT	1 cut(s)	667
Eco24I	GRGCYC	2 cut(s)	60, 838
Eco31I	GGTCTC	1 cut(s)	880
Eco32I	GATATC	1 cut(s)	686
Eco47I	GGWCC	2 cut(s)	253, 313
Eco53kI	GAGCTC	1 cut(s)	58
Eco57I	CTGAAG	1 cut(s)	448
Eco72I	CACGTG	1 cut(s)	698
Eco91I	GGTNACC	1 cut(s)	7
EcoICRI	GAGCTC	1 cut(s)	58
EcoO109I	RGGNCCY	3 cut(s)	253, 305, 835
EcoO65I	GGTNACC	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	157
EcoRV	GATATC	1 cut(s)	686
EcoT14I	CCWWGG	1 cut(s)	256
EcoT38I	GRGCYC	2 cut(s)	60, 838
ErhI	CCWWGG	1 cut(s)	256
FaeI	CATG	3 cut(s)	473, 726, 826
FatI	CATG	3 cut(s)	469, 722, 822
FauNDI	CATATG	1 cut(s)	397
Fnu4HI	GCNGC	3 cut(s)	134, 137, 813
FokI	GGATG	1 cut(s)	365
FriOI	GRGCYC	2 cut(s)	60, 838
Fsp4HI	GCNGC	3 cut(s)	134, 137, 813
FspBI	CTAG	1 cut(s)	257
GluI	GCNGC	3 cut(s)	134, 137, 813
HaeIII	GGCC	6 cut(s)	51, 175, 261, 307, 667, 836
HapII	CCGG	1 cut(s)	499
HgaI	GACGC	1 cut(s)	890
Hin1II	CATG	3 cut(s)	473, 726, 826
HinfI	GANTC	3 cut(s)	65, 199, 550
HpaII	CCGG	1 cut(s)	499
HphI	GGTGA	4 cut(s)	19, 471, 545, 922
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188I	TCNGA	2 cut(s)	229, 621
Hpy188III	TCNNGA	4 cut(s)	32, 487, 499, 823
Hpy8I	GTNNAC	1 cut(s)	346
Hpy99I	CGWCG	1 cut(s)	906
HpyAV	CCTTC	1 cut(s)	657
HpyCH4III	ACNGT	4 cut(s)	13, 76, 241, 784
HpyCH4IV	ACGT	2 cut(s)	433, 697
HpyCH4V	TGCA	7 cut(s)	88, 128, 473, 728, 773, 815, 842
HpyF3I	CTNAG	3 cut(s)	59, 226, 650
HpySE526I	ACGT	2 cut(s)	433, 697
Hsp92II	CATG	3 cut(s)	473, 726, 826
Kpn2I	TCCGGA	1 cut(s)	498
Kzo9I	GATC	6 cut(s)	82, 96, 161, 370, 621, 744
LmnI	GCTCC	2 cut(s)	519, 533
Lsp1109I	GCAGC	2 cut(s)	145, 799
LweI	GCATC	1 cut(s)	824
MaeI	CTAG	1 cut(s)	257
MaeII	ACGT	2 cut(s)	433, 697
MaeIII	GTNAC	4 cut(s)	7, 76, 575, 718
MalI	GATC	6 cut(s)	84, 98, 163, 372, 623, 746
MboI	GATC	6 cut(s)	82, 96, 161, 370, 621, 744
MboII	GAAGA	7 cut(s)	208, 277, 280, 601, 790, 871, 874
MflI	RGATCY	2 cut(s)	621, 744
MhlI	GDGCHC	2 cut(s)	60, 838
MluCI	AATT	5 cut(s)	502, 690, 712, 730, 829
MlyI	GAGTC	1 cut(s)	208
MmeI	TCCRAC	1 cut(s)	178
MnlI	CCTC	7 cut(s)	85, 165, 487, 590, 645, 674, 930
MroI	TCCGGA	1 cut(s)	498
MroXI	GAANNNNTTC	1 cut(s)	494
MseI	TTAA	4 cut(s)	42, 186, 236, 711
MspA1I	CMGCKG	1 cut(s)	136
MspI	CCGG	1 cut(s)	499
MspR9I	CCNGG	1 cut(s)	159
MvaI	CCWGG	1 cut(s)	159
MvnI	CGCG	1 cut(s)	901
NdeI	CATATG	1 cut(s)	397
NdeII	GATC	6 cut(s)	82, 96, 161, 370, 621, 744
NlaIII	CATG	3 cut(s)	473, 726, 826
NlaIV	GGNNCC	3 cut(s)	306, 529, 836
NmuCI	GTSAC	4 cut(s)	7, 76, 575, 718
NspI	RCATGY	1 cut(s)	726
PagI	TCATGA	1 cut(s)	822
PceI	AGGCCT	1 cut(s)	667
PciI	ACATGT	1 cut(s)	722
PcsI	WCGNNNNNNNCGW	1 cut(s)	28
PdmI	GAANNNNTTC	1 cut(s)	494
PfeI	GAWTC	2 cut(s)	65, 550
PflMI	CCANNNNNTGG	1 cut(s)	355
PkrI	GCNGC	3 cut(s)	135, 138, 814
PleI	GAGTC	1 cut(s)	207
PmaCI	CACGTG	1 cut(s)	698
PmlI	CACGTG	1 cut(s)	698
PpsI	GAGTC	1 cut(s)	207
Ppu21I	YACGTR	1 cut(s)	698
PpuMI	RGGWCCY	1 cut(s)	253
PscI	ACATGT	1 cut(s)	722
Psp124BI	GAGCTC	1 cut(s)	60
Psp5II	RGGWCCY	1 cut(s)	253
Psp6I	CCWGG	1 cut(s)	157
PspCI	CACGTG	1 cut(s)	698
PspEI	GGTNACC	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	157
PspN4I	GGNNCC	3 cut(s)	306, 529, 836
PspOMI	GGGCCC	1 cut(s)	834
PspPI	GGNCC	6 cut(s)	253, 260, 305, 313, 834, 835
PspPPI	RGGWCCY	1 cut(s)	253
PstI	CTGCAG	1 cut(s)	90
PstNI	CAGNNNCTG	1 cut(s)	788
PsuI	RGATCY	2 cut(s)	621, 744
RsaI	GTAC	2 cut(s)	353, 456
RsaNI	GTAC	2 cut(s)	352, 455
SacI	GAGCTC	1 cut(s)	60
SaqAI	TTAA	4 cut(s)	42, 186, 236, 711
SatI	GCNGC	3 cut(s)	134, 137, 813
Sau3AI	GATC	6 cut(s)	82, 96, 161, 370, 621, 744
Sau96I	GGNCC	6 cut(s)	253, 260, 305, 313, 834, 835
ScaI	AGTACT	1 cut(s)	353
SchI	GAGTC	1 cut(s)	208
ScrFI	CCNGG	1 cut(s)	159
SduI	GDGCHC	2 cut(s)	60, 838
SfaNI	GCATC	1 cut(s)	824
SfcI	CTRYAG	3 cut(s)	86, 738, 929
SinI	GGWCC	2 cut(s)	253, 313
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
Sse9I	AATT	5 cut(s)	502, 690, 712, 730, 829
SseBI	AGGCCT	1 cut(s)	667
SsiI	CCGC	4 cut(s)	136, 382, 850, 899
SspI	AATATT	2 cut(s)	615, 769
SspMI	CTAG	1 cut(s)	257
SstI	GAGCTC	1 cut(s)	60
StuI	AGGCCT	1 cut(s)	667
StyD4I	CCNGG	1 cut(s)	157
StyI	CCWWGG	1 cut(s)	256
TaaI	ACNGT	4 cut(s)	13, 76, 241, 784
TaiI	ACGT	2 cut(s)	436, 700
TaqI	TCGA	2 cut(s)	31, 904
TaqII	GACCGA	1 cut(s)	904
TasI	AATT	5 cut(s)	502, 690, 712, 730, 829
TatI	WGTACW	2 cut(s)	351, 454
TauI	GCSGC	1 cut(s)	139
TfiI	GAWTC	2 cut(s)	65, 550
Tru1I	TTAA	4 cut(s)	42, 186, 236, 711
Tru9I	TTAA	4 cut(s)	42, 186, 236, 711
TscAI	CASTG	4 cut(s)	67, 79, 223, 758
TseFI	GTSAC	4 cut(s)	7, 76, 575, 718
TseI	GCWGC	2 cut(s)	133, 812
Tsp45I	GTSAC	4 cut(s)	7, 76, 575, 718
TspDTI	ATGAA	2 cut(s)	17, 602
TspGWI	ACGGA	1 cut(s)	37
TspRI	CASTG	4 cut(s)	67, 79, 223, 758
Van91I	CCANNNNNTGG	1 cut(s)	355
VpaK11BI	GGWCC	2 cut(s)	253, 313
XapI	RAATTY	1 cut(s)	690
XceI	RCATGY	1 cut(s)	726
XcmI	CCANNNNNNNNNTGG	1 cut(s)	590
XmaJI	CCTAGG	1 cut(s)	256
XmnI	GAANNNNTTC	1 cut(s)	494
XspI	CTAG	1 cut(s)	257
ZrmI	AGTACT	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.