Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013700.1

Orthogroup ID

OG0013166

Physical Location & Seq

Genomic Coordinates Reverse (-)

6306 .. 6940

Gene Structure 635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013700.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

atggcttactacgtgaatcacccactttacacccctgttagcgacctccaaatgaagattgggtttggttttgggataatatgtcaaatcgcaaacttatattgtcatattctattgaggaatctgaggagccctgatggaagtggaggctatcaaataccatgtggttttctattcaatatagtgacatgcgcaaattacacaactgagatttatcagtggttgggctttaatattgcaacgcagacggttgctggttatctttttgctgtagttgctgcttctatcatgaccaattgggcccttggaaagcaccgccgtttaaagaagctatttgatgggaaggacggaagacctaagtatccacgtcgatgggtgattctaccaccattcttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009653 GO:0009888 GO:0009922 GO:0009923 GO:0009987 GO:0010025 GO:0010026 GO:0010090 GO:0010091 GO:0010166 GO:0010927 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016053 GO:0016491 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0022607 GO:0030030 GO:0030031 GO:0030154 GO:0030176 GO:0030497 GO:0031224 GO:0031227 GO:0031984 GO:0032501 GO:0032502 GO:0032787 GO:0032989 GO:0032991 GO:0042175 GO:0042335 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048468 GO:0048646 GO:0048856 GO:0048869 GO:0055114 GO:0071704 GO:0071840 GO:0071944 GO:0072330 GO:0090558 GO:0090626 GO:0098796 GO:0098827 GO:1901564 GO:1901568 GO:1901570 GO:1901576 GO:1902494 GO:1905499 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00062 ko01040 ko01110 ko01212 map00062 map01040 map01110 map01212

Pfam Domains

Protein Families

Steroid_dh

Protein Analysis

132

Amino Acids

15.01

Weight (kDa)

9.54

Isoelectric Point (pI)

52.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55360
fragaria_vesca	FvH4_7g22400
malus_domestica	MD01G1133600.v1.1 MD07G1197900.v1.1
prunus_persica	Prupe.2G234700_v2.0.a1
pyrus_communis	pycom01g15440 pycom07g18510
rosa_chinensis	RchiOBHm_Chr1g0367031
rosa_laevigata	RLG00000027305
rosa_multiflora	Rmu_sc0013700.1_g000003
rosa_roxburghii	Rroxscaffold_4G00289690
rosa_rugosa	Rorug01G0334100
rosa_samantha	Rh1AG340800 Rh1BG301300 Rh1CG317500 Rh1DG333700
rosa_wichuraiana	Rw0G023880 Rw1G030270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	193
AciI	CCGC	1 cut(s)	316
AgsI	TTSAA	1 cut(s)	178
AjiI	CACGTC	1 cut(s)	368
AluBI	AGCT	1 cut(s)	331
AluI	AGCT	1 cut(s)	331
AoxI	GGCC	1 cut(s)	300
ApaI	GGGCCC	1 cut(s)	304
ApeKI	GCWGC	1 cut(s)	278
AspLEI	GCGC	1 cut(s)	194
AspS9I	GGNCC	2 cut(s)	300, 301
AsuHPI	GGTGA	2 cut(s)	11, 388
BaeGI	GKGCMC	1 cut(s)	304
BaeI	ACNNNNGTAYC	2 cut(s)	344, 377
BanII	GRGCYC	2 cut(s)	134, 304
BbsI	GAAGAC	1 cut(s)	358
BbvI	GCAGC	1 cut(s)	265
BccI	CCATC	3 cut(s)	131, 332, 366
BceAI	ACGGC	1 cut(s)	303
BciVI	GTATCC	1 cut(s)	372
BfmI	CTRYAG	1 cut(s)	270
BfuI	GTATCC	1 cut(s)	372
BisI	GCNGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	280
BmgBI	CACGTC	1 cut(s)	368
BmgT120I	GGNCC	2 cut(s)	300, 301
BmiI	GGNNCC	2 cut(s)	131, 302
BpiI	GAAGAC	1 cut(s)	358
BsaAI	YACGTR	1 cut(s)	13
BsaJI	CCNNGG	1 cut(s)	304
BseDI	CCNNGG	1 cut(s)	304
BseMII	CTCAG	2 cut(s)	116, 198
BseRI	GAGGAG	1 cut(s)	142
BseSI	GKGCMC	1 cut(s)	304
BseXI	GCAGC	1 cut(s)	265
BshFI	GGCC	1 cut(s)	302
BsnI	GGCC	1 cut(s)	302
Bsp120I	GGGCCC	1 cut(s)	300
Bsp1286I	GDGCHC	2 cut(s)	134, 304
BspACI	CCGC	1 cut(s)	316
BspANI	GGCC	1 cut(s)	302
BspCNI	CTCAG	2 cut(s)	117, 199
BspHI	TCATGA	1 cut(s)	288
BspLI	GGNNCC	2 cut(s)	131, 302
BssECI	CCNNGG	1 cut(s)	304
BssT1I	CCWWGG	1 cut(s)	304
Bst4CI	ACNGT	1 cut(s)	250
BstBAI	YACGTR	1 cut(s)	13
BstDEI	CTNAG	3 cut(s)	125, 207, 357
BstHHI	GCGC	1 cut(s)	194
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstNSI	RCATGY	1 cut(s)	192
BstSFI	CTRYAG	1 cut(s)	270
BstSLI	GKGCMC	1 cut(s)	304
BstV1I	GCAGC	1 cut(s)	265
BstV2I	GAAGAC	1 cut(s)	358
BstXI	CCANNNNNNTGG	1 cut(s)	372
BsuI	GTATCC	1 cut(s)	372
BsuRI	GGCC	1 cut(s)	302
BtrI	CACGTC	1 cut(s)	368
BtsIMutI	CAGTG	1 cut(s)	224
CciI	TCATGA	1 cut(s)	288
CfoI	GCGC	1 cut(s)	194
Cfr13I	GGNCC	2 cut(s)	300, 301
CspCI	CAANNNNNGTGG	1 cut(s)	375
CviAII	CATG	3 cut(s)	162, 189, 289
CviJI	RGCY	6 cut(s)	5, 132, 150, 228, 302, 331
CviKI_1	RGCY	6 cut(s)	5, 132, 150, 228, 302, 331
DdeI	CTNAG	3 cut(s)	125, 207, 357
DraI	TTTAAA	1 cut(s)	324
Eco130I	CCWWGG	1 cut(s)	304
Eco24I	GRGCYC	2 cut(s)	134, 304
EcoO109I	RGGNCCY	1 cut(s)	301
EcoT14I	CCWWGG	1 cut(s)	304
EcoT38I	GRGCYC	2 cut(s)	134, 304
ErhI	CCWWGG	1 cut(s)	304
FaeI	CATG	3 cut(s)	165, 192, 292
FaiI	YATR	7 cut(s)	82, 100, 108, 163, 182, 190, 290
FatI	CATG	3 cut(s)	161, 188, 288
Fnu4HI	GCNGC	1 cut(s)	279
FriOI	GRGCYC	2 cut(s)	134, 304
Fsp4HI	GCNGC	1 cut(s)	279
FspI	TGCGCA	1 cut(s)	193
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	1 cut(s)	279
HaeIII	GGCC	1 cut(s)	302
HhaI	GCGC	1 cut(s)	194
Hin1II	CATG	3 cut(s)	165, 192, 292
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HinfI	GANTC	3 cut(s)	16, 121, 379
HphI	GGTGA	2 cut(s)	11, 388
Hpy188I	TCNGA	1 cut(s)	126
Hpy188III	TCNNGA	1 cut(s)	289
Hpy99I	CGWCG	1 cut(s)	372
HpyAV	CCTTC	1 cut(s)	337
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4IV	ACGT	2 cut(s)	12, 367
HpyCH4V	TGCA	1 cut(s)	239
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	3 cut(s)	125, 207, 357
HpySE526I	ACGT	2 cut(s)	12, 367
Hsp92II	CATG	3 cut(s)	165, 192, 292
HspAI	GCGC	1 cut(s)	192
LmnI	GCTCC	1 cut(s)	129
LpnPI	CCDG	3 cut(s)	48, 147, 240
Lsp1109I	GCAGC	1 cut(s)	265
MaeII	ACGT	2 cut(s)	12, 367
MaeIII	GTNAC	1 cut(s)	184
MboII	GAAGA	2 cut(s)	67, 363
MfeI	CAATTG	1 cut(s)	295
MhlI	GDGCHC	2 cut(s)	134, 304
MluCI	AATT	2 cut(s)	196, 295
MnlI	CCTC	4 cut(s)	56, 111, 120, 140
MseI	TTAA	2 cut(s)	231, 323
MslI	CAYNNNNRTG	1 cut(s)	370
MunI	CAATTG	1 cut(s)	295
MwoI	GCNNNNNNNGC	1 cut(s)	275
NlaIII	CATG	3 cut(s)	165, 192, 292
NlaIV	GGNNCC	2 cut(s)	131, 302
NmuCI	GTSAC	1 cut(s)	184
NsbI	TGCGCA	1 cut(s)	193
NspI	RCATGY	1 cut(s)	192
PagI	TCATGA	1 cut(s)	288
PfeI	GAWTC	3 cut(s)	16, 121, 379
PkrI	GCNGC	1 cut(s)	280
Ppu21I	YACGTR	1 cut(s)	13
PspN4I	GGNNCC	2 cut(s)	131, 302
PspOMI	GGGCCC	1 cut(s)	300
PspPI	GGNCC	2 cut(s)	300, 301
RseI	CAYNNNNRTG	1 cut(s)	370
SaqAI	TTAA	2 cut(s)	231, 323
SatI	GCNGC	1 cut(s)	279
Sau96I	GGNCC	2 cut(s)	300, 301
SduI	GDGCHC	2 cut(s)	134, 304
SetI	ASST	5 cut(s)	15, 48, 333, 358, 370
SfcI	CTRYAG	1 cut(s)	270
SgeI	CNNG	9 cut(s)	25, 47, 146, 174, 201, 267, 301, 317, 378
SmiMI	CAYNNNNRTG	1 cut(s)	370
Sse9I	AATT	2 cut(s)	196, 295
SsiI	CCGC	1 cut(s)	316
SspI	AATATT	1 cut(s)	235
StyI	CCWWGG	1 cut(s)	304
TaaI	ACNGT	1 cut(s)	250
TaiI	ACGT	2 cut(s)	15, 370
TaqI	TCGA	1 cut(s)	370
TasI	AATT	2 cut(s)	196, 295
TfiI	GAWTC	3 cut(s)	16, 121, 379
Tru1I	TTAA	2 cut(s)	231, 323
Tru9I	TTAA	2 cut(s)	231, 323
TscAI	CASTG	1 cut(s)	224
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	1 cut(s)	278
Tsp45I	GTSAC	1 cut(s)	184
TspDTI	ATGAA	1 cut(s)	68
TspGWI	ACGGA	1 cut(s)	363
TspRI	CASTG	1 cut(s)	224
XceI	RCATGY	1 cut(s)	192
XcmI	CCANNNNNNNNNTGG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.