Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012738

Physical Location & Seq

Genomic Coordinates Reverse (-)

20806566 .. 20808168

Gene Structure 1603 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G56070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGCGAATCCTAAAGTCTTCTTCGACATCTTGATTGGTAAGATGAAGGCAGGGCGTGTTGTAATGGAGTTATTTGCAGATGTGACTCCGAGAACAGCTAATAATTTCCGTGCTTTGTGCACTGGGGAGAATGGTATTGGGAAAGCAGGGAAGGCTTTACACTACAAAGGCTCAGCCTTTCACCGTATAATCCCAGGGTTCATGTGTCAAGGTGGAGATTTCACTCGTGGGAATGGAACTGGAGGAGAATCTATTTACGGGTCTAAATTTGAAGATGAGAACTTCAAGTTGAAGCACACTGGTCCAGGGATTTTGTCTATGGCTAACTCTGGTCCCAACACTAATGGTTCTCAGTTCTTCATCTGCACAGAGAAGACTTCGTGGCTTGATGGGAAACATGTTGTTTTCGGGAAAGTTGTTGATGGATACAATGTGGTCAAGGCAATGGAGGATGTTGGCTCTGACATGGGAAATCCTTCTGAACGAGTTGTGATTGAAGATTGTGGTGAGCTCAAGAACCCAAGTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005794 GO:0005829 GO:0006464 GO:0006807 GO:0007154 GO:0007165 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0012505 GO:0016018 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0023052 GO:0033218 GO:0036211 GO:0042221 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

176

Amino Acids

18.92

Weight (kDa)

7.68

Isoelectric Point (pI)

14.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	14 - 169	7.9e-50	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56070 AT3G56070
fragaria_vesca	FvH4_4g00620 FvH4_4g00620 FvH4_6g02290
malus_domestica	MD04G1228500.v1.1
prunus_persica	Prupe.6G348500_v2.0.a1
pyrus_communis	pycom04g20270 pycom12g22510
rosa_chinensis	RchiOBHm_Chr3g0450041
rosa_laevigata	RLG00000025762 RLG00000025763
rosa_multiflora	Rmu_sc0002646.1_g000022
rosa_roxburghii	Rroxscaffold_6G00427830
rosa_rugosa	Rorug02G0625000
rosa_samantha	Rh3BG024700 Rh3DG024700
rosa_wichuraiana	Rw3G001920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	266
AflIII	ACRYGT	1 cut(s)	397
AgsI	TTSAA	4 cut(s)	272, 286, 292, 497
AjnI	CCWGG	2 cut(s)	193, 304
AluBI	AGCT	2 cut(s)	98, 511
AluI	AGCT	2 cut(s)	98, 511
Alw21I	GWGCWC	2 cut(s)	122, 513
Alw44I	GTGCAC	1 cut(s)	118
ApaLI	GTGCAC	1 cut(s)	118
ApoI	RAATTY	1 cut(s)	266
Asp700I	GAANNNNTTC	1 cut(s)	475
AspS9I	GGNCC	2 cut(s)	302, 332
AsuHPI	GGTGA	2 cut(s)	173, 518
AvaII	GGWCC	2 cut(s)	302, 332
BaeGI	GKGCMC	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	513
BauI	CACGAG	1 cut(s)	225
BbsI	GAAGAC	2 cut(s)	10, 380
Bbv12I	GWGCWC	2 cut(s)	122, 513
BccI	CCATC	2 cut(s)	383, 416
BciT130I	CCWGG	2 cut(s)	195, 306
BciVI	GTATCC	1 cut(s)	419
BfuI	GTATCC	1 cut(s)	419
BlpI	GCTNAGC	1 cut(s)	172
Bme1390I	CCNGG	2 cut(s)	195, 306
Bme18I	GGWCC	2 cut(s)	302, 332
BmgT120I	GGNCC	2 cut(s)	302, 332
BmiI	GGNNCC	1 cut(s)	334
BmrFI	CCNGG	2 cut(s)	195, 306
BmrI	ACTGGG	1 cut(s)	132
BmuI	ACTGGG	1 cut(s)	132
BpiI	GAAGAC	2 cut(s)	10, 380
BpmI	CTGGAG	1 cut(s)	261
Bpu1102I	GCTNAGC	1 cut(s)	172
BpuEI	CTTGAG	1 cut(s)	497
BsaJI	CCNNGG	3 cut(s)	193, 194, 305
Bse1I	ACTGG	3 cut(s)	127, 244, 304
Bse3DI	GCAATG	1 cut(s)	450
BseBI	CCWGG	2 cut(s)	195, 306
BseDI	CCNNGG	3 cut(s)	193, 194, 305
BseGI	GGATG	1 cut(s)	457
BseMI	GCAATG	1 cut(s)	450
BseMII	CTCAG	2 cut(s)	186, 365
BseNI	ACTGG	3 cut(s)	127, 244, 304
BseRI	GAGGAG	1 cut(s)	258
BseSI	GKGCMC	1 cut(s)	122
BsgI	GTGCAG	1 cut(s)	349
BsiHKAI	GWGCWC	2 cut(s)	122, 513
BslFI	GGGAC	1 cut(s)	318
BsmFI	GGGAC	1 cut(s)	318
Bsp1286I	GDGCHC	2 cut(s)	122, 513
Bsp1720I	GCTNAGC	1 cut(s)	172
BspCNI	CTCAG	2 cut(s)	185, 364
BspLI	GGNNCC	1 cut(s)	334
BsrDI	GCAATG	1 cut(s)	450
BsrI	ACTGG	3 cut(s)	127, 244, 304
BssECI	CCNNGG	3 cut(s)	193, 194, 305
BssSI	CACGAG	1 cut(s)	225
Bst2BI	CACGAG	1 cut(s)	225
Bst2UI	CCWGG	2 cut(s)	195, 306
Bst4CI	ACNGT	1 cut(s)	185
BstDEI	CTNAG	2 cut(s)	172, 351
BstF5I	GGATG	1 cut(s)	457
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstNI	CCWGG	2 cut(s)	195, 306
BstNSI	RCATGY	1 cut(s)	401
BstSCI	CCNGG	2 cut(s)	193, 304
BstSLI	GKGCMC	1 cut(s)	122
BstV2I	GAAGAC	2 cut(s)	10, 380
BsuI	GTATCC	1 cut(s)	419
BtsCI	GGATG	1 cut(s)	457
BtsIMutI	CAGTG	2 cut(s)	120, 297
Cfr13I	GGNCC	2 cut(s)	302, 332
CviAII	CATG	3 cut(s)	202, 398, 466
CviJI	RGCY	8 cut(s)	98, 155, 171, 176, 323, 385, 459, 511
CviKI_1	RGCY	8 cut(s)	98, 155, 171, 176, 323, 385, 459, 511
DdeI	CTNAG	2 cut(s)	172, 351
Ecl136II	GAGCTC	1 cut(s)	511
Eco24I	GRGCYC	1 cut(s)	513
Eco47I	GGWCC	2 cut(s)	302, 332
Eco53kI	GAGCTC	1 cut(s)	511
EcoICRI	GAGCTC	1 cut(s)	511
EcoRII	CCWGG	2 cut(s)	193, 304
EcoT38I	GRGCYC	1 cut(s)	513
FaeI	CATG	3 cut(s)	205, 401, 469
FaiI	YATR	6 cut(s)	188, 203, 320, 399, 467, 529
FaqI	GGGAC	1 cut(s)	318
FatI	CATG	3 cut(s)	201, 397, 465
FokI	GGATG	1 cut(s)	464
FriOI	GRGCYC	1 cut(s)	513
GsuI	CTGGAG	1 cut(s)	261
Hin1II	CATG	3 cut(s)	205, 401, 469
HinfI	GANTC	3 cut(s)	7, 85, 248
HphI	GGTGA	2 cut(s)	173, 518
Hpy166II	GTNNAC	1 cut(s)	120
Hpy188I	TCNGA	3 cut(s)	90, 463, 481
Hpy188III	TCNNGA	3 cut(s)	31, 409, 514
Hpy8I	GTNNAC	1 cut(s)	120
HpyAV	CCTTC	3 cut(s)	40, 145, 486
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4V	TGCA	3 cut(s)	77, 120, 366
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	2 cut(s)	172, 351
Hsp92II	CATG	3 cut(s)	205, 401, 469
MaeIII	GTNAC	1 cut(s)	82
MboII	GAAGA	6 cut(s)	10, 13, 284, 349, 385, 509
MhlI	GDGCHC	2 cut(s)	122, 513
MluCI	AATT	2 cut(s)	103, 266
MlyI	GAGTC	1 cut(s)	79
MnlI	CCTC	2 cut(s)	236, 442
MroXI	GAANNNNTTC	1 cut(s)	475
MspR9I	CCNGG	2 cut(s)	195, 306
MvaI	CCWGG	2 cut(s)	195, 306
MwoI	GCNNNNNNNGC	1 cut(s)	152
NlaIII	CATG	3 cut(s)	205, 401, 469
NlaIV	GGNNCC	1 cut(s)	334
NmuCI	GTSAC	1 cut(s)	82
NspI	RCATGY	1 cut(s)	401
PasI	CCCWGGG	1 cut(s)	194
PciI	ACATGT	1 cut(s)	397
PdmI	GAANNNNTTC	1 cut(s)	475
PfeI	GAWTC	2 cut(s)	7, 248
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
PscI	ACATGT	1 cut(s)	397
Psp124BI	GAGCTC	1 cut(s)	513
Psp6I	CCWGG	2 cut(s)	193, 304
PspGI	CCWGG	2 cut(s)	193, 304
PspN4I	GGNNCC	1 cut(s)	334
PspPI	GGNCC	2 cut(s)	302, 332
SacI	GAGCTC	1 cut(s)	513
Sau96I	GGNCC	2 cut(s)	302, 332
SchI	GAGTC	1 cut(s)	79
ScrFI	CCNGG	2 cut(s)	195, 306
SduI	GDGCHC	2 cut(s)	122, 513
SetI	ASST	3 cut(s)	100, 214, 513
SinI	GGWCC	2 cut(s)	302, 332
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
Sse9I	AATT	2 cut(s)	103, 266
SstI	GAGCTC	1 cut(s)	513
StyD4I	CCNGG	2 cut(s)	193, 304
TaaI	ACNGT	1 cut(s)	185
TaqI	TCGA	1 cut(s)	24
TasI	AATT	2 cut(s)	103, 266
TfiI	GAWTC	2 cut(s)	7, 248
TscAI	CASTG	2 cut(s)	127, 304
TseFI	GTSAC	1 cut(s)	82
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	4 cut(s)	59, 190, 349, 516
TspGWI	ACGGA	1 cut(s)	98
TspRI	CASTG	2 cut(s)	127, 304
VneI	GTGCAC	1 cut(s)	118
VpaK11BI	GGWCC	2 cut(s)	302, 332
XapI	RAATTY	1 cut(s)	266
XceI	RCATGY	1 cut(s)	401
XmnI	GAANNNNTTC	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.