Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0012738

Physical Location & Seq

Genomic Coordinates Reverse (-)

543436 .. 546097

Gene Structure 2662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g00620.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGTCGAATCCAAGGGTTTTCTTTGATATACTGATTGGTAGGATGAAGGCGGGTCGTATTGTAATGCAGTTGTTTGCTGATGCTACACCAAAGACTGCTGAGAACTTCCGTGCCCTTTGCACCGGTGAGAAGGGGATTGGAAGTTCTGGTAAGCGATTGCACTACAAGGGCTCTGCATTTCACCGCATCATCCCAAATTTCATGTGTCAGGGTGGAGATTTCACAAGGGGTAATGGGACTGGAGGAGAGTCCATCTATGGCGCAAAGTTTGAGGATGAGAACTTCAAGCTGAAGCATACAGGTCCTGGGATTCTGTCCATGGCAAATGCTGGACCAAACACCAATGGTTCGCAGTTCTTCATTTGCACAGATAAGACCTCATGGCTCGATGGAAAGCATGTTGTGTTTGGGAAAGTGGTTGATGGTTATGGCGTTGTTCAGAAGATGGAGAAGGTTGGTTCGGATTCAGGGTCGACTACAGAACCTGTGGTTATTGAAAATTGTGGTACGAAATTGGGAGCAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005794 GO:0005829 GO:0006464 GO:0006807 GO:0007154 GO:0007165 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0012505 GO:0016018 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0023052 GO:0033218 GO:0036211 GO:0042221 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

176

Amino Acids

18.78

Weight (kDa)

8.9

Isoelectric Point (pI)

14.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	14 - 169	5.8e-51	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56070 AT3G56070
fragaria_vesca	FvH4_4g00620 FvH4_4g00620 FvH4_6g02290
malus_domestica	MD04G1228500.v1.1
prunus_persica	Prupe.6G348500_v2.0.a1
pyrus_communis	pycom04g20270 pycom12g22510
rosa_chinensis	RchiOBHm_Chr3g0450041
rosa_laevigata	RLG00000025762 RLG00000025763
rosa_multiflora	Rmu_sc0002646.1_g000022
rosa_roxburghii	Rroxscaffold_6G00427830
rosa_rugosa	Rorug02G0625000
rosa_samantha	Rh3BG024700 Rh3DG024700
rosa_wichuraiana	Rw3G001920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	473
AciI	CCGC	2 cut(s)	50, 184
AcsI	RAATTY	1 cut(s)	196
AcuI	CTGAAG	1 cut(s)	311
AfaI	GTAC	1 cut(s)	508
AgeI	ACCGGT	1 cut(s)	122
AgsI	TTSAA	2 cut(s)	286, 497
AjnI	CCWGG	1 cut(s)	304
AloI	GAACNNNNNNTCC	2 cut(s)	127, 159
AluBI	AGCT	1 cut(s)	289
AluI	AGCT	1 cut(s)	289
AlwNI	CAGNNNCTG	2 cut(s)	305, 485
ApoI	RAATTY	1 cut(s)	196
AsiGI	ACCGGT	1 cut(s)	122
AspLEI	GCGC	1 cut(s)	263
AspS9I	GGNCC	2 cut(s)	302, 332
AsuHPI	GGTGA	2 cut(s)	137, 173
AvaII	GGWCC	2 cut(s)	302, 332
BaeGI	GKGCMC	1 cut(s)	115
BanII	GRGCYC	1 cut(s)	173
BccI	CCATC	4 cut(s)	260, 383, 416, 439
BciT130I	CCWGG	1 cut(s)	306
BfmI	CTRYAG	1 cut(s)	477
Bme1390I	CCNGG	1 cut(s)	306
Bme18I	GGWCC	2 cut(s)	302, 332
BmgT120I	GGNCC	2 cut(s)	302, 332
BmrFI	CCNGG	1 cut(s)	306
BmsI	GCATC	2 cut(s)	70, 195
BpmI	CTGGAG	1 cut(s)	261
BsaJI	CCNNGG	3 cut(s)	11, 305, 318
BsaWI	WCCGGW	1 cut(s)	122
Bse118I	RCCGGY	1 cut(s)	122
Bse1I	ACTGG	1 cut(s)	244
BseBI	CCWGG	1 cut(s)	306
BseDI	CCNNGG	3 cut(s)	11, 305, 318
BseGI	GGATG	3 cut(s)	48, 189, 280
BseMII	CTCAG	1 cut(s)	90
BseNI	ACTGG	1 cut(s)	244
BseRI	GAGGAG	1 cut(s)	258
BseSI	GKGCMC	1 cut(s)	115
BshTI	ACCGGT	1 cut(s)	122
BsiSI	CCGG	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	250
BsmFI	GGGAC	1 cut(s)	250
Bsp1286I	GDGCHC	2 cut(s)	115, 173
Bsp19I	CCATGG	1 cut(s)	318
BspACI	CCGC	2 cut(s)	50, 184
BspCNI	CTCAG	1 cut(s)	91
BsrFI	RCCGGY	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	244
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	3 cut(s)	11, 305, 318
BssT1I	CCWWGG	2 cut(s)	11, 318
Bst2UI	CCWGG	1 cut(s)	306
BstDEI	CTNAG	1 cut(s)	99
BstDSI	CCRYGG	1 cut(s)	318
BstF5I	GGATG	3 cut(s)	48, 189, 280
BstHHI	GCGC	1 cut(s)	263
BstNI	CCWGG	1 cut(s)	306
BstNSI	RCATGY	1 cut(s)	401
BstSCI	CCNGG	1 cut(s)	304
BstSFI	CTRYAG	1 cut(s)	477
BstSLI	GKGCMC	1 cut(s)	115
BtgI	CCRYGG	1 cut(s)	318
BtsCI	GGATG	3 cut(s)	48, 189, 280
CaiI	CAGNNNCTG	2 cut(s)	305, 485
CfoI	GCGC	1 cut(s)	263
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	2 cut(s)	302, 332
Csp6I	GTAC	1 cut(s)	507
CspAI	ACCGGT	1 cut(s)	122
CviAII	CATG	4 cut(s)	202, 319, 381, 398
CviJI	RGCY	3 cut(s)	171, 289, 385
CviKI_1	RGCY	3 cut(s)	171, 289, 385
CviQI	GTAC	1 cut(s)	507
DdeI	CTNAG	1 cut(s)	99
Eco130I	CCWWGG	2 cut(s)	11, 318
Eco24I	GRGCYC	1 cut(s)	173
Eco47I	GGWCC	2 cut(s)	302, 332
Eco57I	CTGAAG	1 cut(s)	311
EcoO109I	RGGNCCY	1 cut(s)	302
EcoRII	CCWGG	1 cut(s)	304
EcoT14I	CCWWGG	2 cut(s)	11, 318
EcoT38I	GRGCYC	1 cut(s)	173
ErhI	CCWWGG	2 cut(s)	11, 318
FaeI	CATG	4 cut(s)	205, 322, 384, 401
FaiI	YATR	8 cut(s)	29, 203, 258, 297, 320, 382, 399, 429
FaqI	GGGAC	1 cut(s)	250
FatI	CATG	4 cut(s)	201, 318, 380, 397
FauI	CCCGC	1 cut(s)	43
FblI	GTMKAC	1 cut(s)	473
FokI	GGATG	3 cut(s)	55, 176, 287
FriOI	GRGCYC	1 cut(s)	173
GlaI	GCGC	1 cut(s)	262
GsuI	CTGGAG	1 cut(s)	261
HapII	CCGG	1 cut(s)	123
HhaI	GCGC	1 cut(s)	263
Hin1II	CATG	4 cut(s)	205, 322, 384, 401
Hin6I	GCGC	1 cut(s)	261
HinP1I	GCGC	1 cut(s)	261
HincII	GTYRAC	1 cut(s)	474
HindII	GTYRAC	1 cut(s)	474
HinfI	GANTC	4 cut(s)	7, 248, 310, 464
HpaII	CCGG	1 cut(s)	123
HphI	GGTGA	2 cut(s)	137, 173
Hpy166II	GTNNAC	1 cut(s)	474
Hpy188I	TCNGA	2 cut(s)	441, 463
Hpy8I	GTNNAC	1 cut(s)	474
HpyAV	CCTTC	3 cut(s)	40, 124, 445
HpyCH4V	TGCA	5 cut(s)	67, 120, 160, 176, 366
HpyF3I	CTNAG	1 cut(s)	99
Hsp92II	CATG	4 cut(s)	205, 322, 384, 401
HspAI	GCGC	1 cut(s)	261
LmnI	GCTCC	1 cut(s)	518
LweI	GCATC	2 cut(s)	70, 195
MboII	GAAGA	2 cut(s)	349, 454
MhlI	GDGCHC	2 cut(s)	115, 173
MluCI	AATT	3 cut(s)	196, 499, 512
MlyI	GAGTC	1 cut(s)	257
MnlI	CCTC	3 cut(s)	236, 265, 388
MspI	CCGG	1 cut(s)	123
MspR9I	CCNGG	1 cut(s)	306
MvaI	CCWGG	1 cut(s)	306
NcoI	CCATGG	1 cut(s)	318
NlaIII	CATG	4 cut(s)	205, 322, 384, 401
NspI	RCATGY	1 cut(s)	401
PfeI	GAWTC	3 cut(s)	7, 310, 464
PinAI	ACCGGT	1 cut(s)	122
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
PpuMI	RGGWCCY	1 cut(s)	302
Psp5II	RGGWCCY	1 cut(s)	302
Psp6I	CCWGG	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	304
PspPI	GGNCC	2 cut(s)	302, 332
PspPPI	RGGWCCY	1 cut(s)	302
PstNI	CAGNNNCTG	2 cut(s)	305, 485
RsaI	GTAC	1 cut(s)	508
RsaNI	GTAC	1 cut(s)	507
SalI	GTCGAC	1 cut(s)	472
Sau96I	GGNCC	2 cut(s)	302, 332
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	1 cut(s)	306
SduI	GDGCHC	2 cut(s)	115, 173
SetI	ASST	5 cut(s)	291, 304, 380, 456, 487
SfaNI	GCATC	2 cut(s)	70, 195
SfcI	CTRYAG	1 cut(s)	477
SgrAI	CRCCGGYG	1 cut(s)	122
SinI	GGWCC	2 cut(s)	302, 332
Sse9I	AATT	3 cut(s)	196, 499, 512
SsiI	CCGC	2 cut(s)	50, 184
StyD4I	CCNGG	1 cut(s)	304
StyI	CCWWGG	2 cut(s)	11, 318
TaqI	TCGA	3 cut(s)	5, 387, 473
TasI	AATT	3 cut(s)	196, 499, 512
TfiI	GAWTC	3 cut(s)	7, 310, 464
TspDTI	ATGAA	3 cut(s)	59, 190, 349
TspGWI	ACGGA	1 cut(s)	98
VpaK11BI	GGWCC	2 cut(s)	302, 332
XapI	RAATTY	1 cut(s)	196
XceI	RCATGY	1 cut(s)	401
XmiI	GTMKAC	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.