Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0012738

Physical Location & Seq

Genomic Coordinates Forward (+)

48126912 .. 48127436

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025762

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGTCGAATCCAAAGGTTTTCTTTGATATACTGATTGGAAGGATGAAGGCGGGTCGCATTGTGATGGAGTTGTTTGCTGATGTTACACCGAAGACTGCTGAGAACTTCCGTGCCCTTTGCACTGGTGATAAGGGGATTGGAATGTCCGGGAAGCCACTGCACTACAAGGGATCTGTATTTCACCGCATTATCCCGAATTTCATGTGTCAGGGTGGAGATTTCACAAGGGGTAATGGGACTGGAGGAGAGTCCATTTATGGCACAAAATTTGCAGATGAGAACTTCAAGCTGAAGCATACAGGACCGGGGATTCTGTCTATGGCAAATGCTGGACCAAACACTAATGGTTCTCAGTTCTTCATTTGCACAGACAGGACCCCGTGGCTTGATGGAAAGCATGTTGTGTTTGGGAAAGTGGTTGATGGTTATAGCATTGTTCAGAAGATGGAAAAGGTTGGTTCAGATTCCGGGACGACTACAGAACCTGTGGTTATTGAAGATTGTGGTCAGATAACAGAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005794 GO:0005829 GO:0006464 GO:0006807 GO:0007154 GO:0007165 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0012505 GO:0016018 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0023052 GO:0033218 GO:0036211 GO:0042221 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

175

Amino Acids

18.85

Weight (kDa)

7.68

Isoelectric Point (pI)

15.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	14 - 169	4.7e-51	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56070 AT3G56070
fragaria_vesca	FvH4_4g00620 FvH4_4g00620 FvH4_6g02290
malus_domestica	MD04G1228500.v1.1
prunus_persica	Prupe.6G348500_v2.0.a1
pyrus_communis	pycom04g20270 pycom12g22510
rosa_chinensis	RchiOBHm_Chr3g0450041
rosa_laevigata	RLG00000025762 RLG00000025763
rosa_multiflora	Rmu_sc0002646.1_g000022
rosa_roxburghii	Rroxscaffold_6G00427830
rosa_rugosa	Rorug02G0625000
rosa_samantha	Rh3BG024700 Rh3DG024700
rosa_wichuraiana	Rw3G001920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	50, 184
AclWI	GGATC	1 cut(s)	178
AcsI	RAATTY	2 cut(s)	196, 266
AcuI	CTGAAG	1 cut(s)	311
AgsI	TTSAA	2 cut(s)	286, 497
AluBI	AGCT	1 cut(s)	289
AluI	AGCT	1 cut(s)	289
AlwI	GGATC	1 cut(s)	178
AlwNI	CAGNNNCTG	1 cut(s)	485
ApoI	RAATTY	2 cut(s)	196, 266
AspS9I	GGNCC	3 cut(s)	302, 332, 375
AsuC2I	CCSGG	3 cut(s)	148, 306, 469
AsuHPI	GGTGA	2 cut(s)	137, 173
AvaII	GGWCC	3 cut(s)	302, 332, 375
BaeGI	GKGCMC	1 cut(s)	115
BbsI	GAAGAC	1 cut(s)	98
BccI	CCATC	4 cut(s)	58, 383, 416, 439
BcnI	CCSGG	3 cut(s)	148, 306, 469
BfmI	CTRYAG	1 cut(s)	477
Bme1390I	CCNGG	3 cut(s)	148, 306, 469
Bme18I	GGWCC	3 cut(s)	302, 332, 375
BmgT120I	GGNCC	3 cut(s)	302, 332, 375
BmiI	GGNNCC	1 cut(s)	377
BmrFI	CCNGG	3 cut(s)	148, 306, 469
BpiI	GAAGAC	1 cut(s)	98
BpmI	CTGGAG	1 cut(s)	261
BpuMI	CCSGG	3 cut(s)	148, 306, 469
BsaJI	CCNNGG	2 cut(s)	305, 380
Bse1I	ACTGG	2 cut(s)	127, 244
BseDI	CCNNGG	2 cut(s)	305, 380
BseGI	GGATG	1 cut(s)	48
BseMII	CTCAG	2 cut(s)	90, 365
BseNI	ACTGG	2 cut(s)	127, 244
BseRI	GAGGAG	1 cut(s)	258
BseSI	GKGCMC	1 cut(s)	115
BsgI	GTGCAG	1 cut(s)	143
BsiSI	CCGG	3 cut(s)	147, 305, 468
BslFI	GGGAC	2 cut(s)	250, 484
BsmFI	GGGAC	2 cut(s)	250, 484
Bsp1286I	GDGCHC	1 cut(s)	115
Bsp143I	GATC	1 cut(s)	170
BspACI	CCGC	2 cut(s)	50, 184
BspCNI	CTCAG	2 cut(s)	91, 364
BspLI	GGNNCC	1 cut(s)	377
BspPI	GGATC	1 cut(s)	178
BsrI	ACTGG	2 cut(s)	127, 244
BssECI	CCNNGG	2 cut(s)	305, 380
BssMI	GATC	1 cut(s)	170
BstDEI	CTNAG	2 cut(s)	99, 351
BstDSI	CCRYGG	1 cut(s)	380
BstF5I	GGATG	1 cut(s)	48
BstKTI	GATC	1 cut(s)	173
BstMBI	GATC	1 cut(s)	170
BstNSI	RCATGY	1 cut(s)	401
BstSCI	CCNGG	3 cut(s)	146, 304, 467
BstSFI	CTRYAG	1 cut(s)	477
BstSLI	GKGCMC	1 cut(s)	115
BstV2I	GAAGAC	1 cut(s)	98
BstX2I	RGATCY	1 cut(s)	170
BstYI	RGATCY	1 cut(s)	170
BtgI	CCRYGG	1 cut(s)	380
BtsCI	GGATG	1 cut(s)	48
BtsI	GCAGTG	1 cut(s)	155
BtsIMutI	CAGTG	2 cut(s)	120, 155
CaiI	CAGNNNCTG	1 cut(s)	485
Cfr13I	GGNCC	3 cut(s)	302, 332, 375
CviAII	CATG	2 cut(s)	202, 398
CviJI	RGCY	3 cut(s)	154, 289, 385
CviKI_1	RGCY	3 cut(s)	154, 289, 385
DdeI	CTNAG	2 cut(s)	99, 351
DpnI	GATC	1 cut(s)	172
DpnII	GATC	1 cut(s)	170
Eco47I	GGWCC	3 cut(s)	302, 332, 375
Eco57I	CTGAAG	1 cut(s)	311
EcoO109I	RGGNCCY	1 cut(s)	375
FaeI	CATG	2 cut(s)	205, 401
FaiI	YATR	7 cut(s)	29, 203, 258, 297, 320, 399, 429
FalI	AAGNNNNNCTT	1 cut(s)	37
FaqI	GGGAC	2 cut(s)	250, 484
FatI	CATG	2 cut(s)	201, 397
FauI	CCCGC	1 cut(s)	43
FokI	GGATG	1 cut(s)	55
GsuI	CTGGAG	1 cut(s)	261
HapII	CCGG	3 cut(s)	147, 305, 468
Hin1II	CATG	2 cut(s)	205, 401
HinfI	GANTC	4 cut(s)	7, 248, 310, 464
HpaII	CCGG	3 cut(s)	147, 305, 468
HphI	GGTGA	2 cut(s)	137, 173
Hpy188I	TCNGA	3 cut(s)	441, 463, 510
Hpy188III	TCNNGA	1 cut(s)	193
HpyAV	CCTTC	2 cut(s)	33, 40
HpyCH4V	TGCA	4 cut(s)	120, 160, 272, 366
HpyF3I	CTNAG	2 cut(s)	99, 351
Hsp92II	CATG	2 cut(s)	205, 401
Kzo9I	GATC	1 cut(s)	170
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	1 cut(s)	172
MboI	GATC	1 cut(s)	170
MboII	GAAGA	4 cut(s)	103, 349, 454, 509
MflI	RGATCY	1 cut(s)	170
MhlI	GDGCHC	1 cut(s)	115
MluCI	AATT	2 cut(s)	196, 266
MlyI	GAGTC	1 cut(s)	257
MnlI	CCTC	1 cut(s)	236
MslI	CAYNNNNRTG	1 cut(s)	62
MspI	CCGG	3 cut(s)	147, 305, 468
MspR9I	CCNGG	3 cut(s)	148, 306, 469
NciI	CCSGG	3 cut(s)	148, 306, 469
NdeII	GATC	1 cut(s)	170
NlaIII	CATG	2 cut(s)	205, 401
NlaIV	GGNNCC	1 cut(s)	377
NspI	RCATGY	1 cut(s)	401
PfeI	GAWTC	3 cut(s)	7, 310, 464
PfoI	TCCNGGA	2 cut(s)	146, 467
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
PpuMI	RGGWCCY	1 cut(s)	375
Psp5II	RGGWCCY	1 cut(s)	375
PspN4I	GGNNCC	1 cut(s)	377
PspPI	GGNCC	3 cut(s)	302, 332, 375
PspPPI	RGGWCCY	1 cut(s)	375
PstNI	CAGNNNCTG	1 cut(s)	485
PsuI	RGATCY	1 cut(s)	170
RseI	CAYNNNNRTG	1 cut(s)	62
Sau3AI	GATC	1 cut(s)	170
Sau96I	GGNCC	3 cut(s)	302, 332, 375
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	3 cut(s)	148, 306, 469
SduI	GDGCHC	1 cut(s)	115
SetI	ASST	4 cut(s)	18, 291, 456, 487
SfcI	CTRYAG	1 cut(s)	477
SinI	GGWCC	3 cut(s)	302, 332, 375
SmiMI	CAYNNNNRTG	1 cut(s)	62
Sse9I	AATT	2 cut(s)	196, 266
SsiI	CCGC	2 cut(s)	50, 184
StyD4I	CCNGG	3 cut(s)	146, 304, 467
TaqI	TCGA	1 cut(s)	5
TasI	AATT	2 cut(s)	196, 266
TfiI	GAWTC	3 cut(s)	7, 310, 464
TscAI	CASTG	2 cut(s)	127, 162
TspDTI	ATGAA	3 cut(s)	59, 190, 349
TspGWI	ACGGA	1 cut(s)	98
TspRI	CASTG	2 cut(s)	127, 162
VpaK11BI	GGWCC	3 cut(s)	302, 332, 375
XapI	RAATTY	2 cut(s)	196, 266
XceI	RCATGY	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.