Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0012738

Physical Location & Seq

Genomic Coordinates Forward (+)

29765210 .. 29765772

Gene Structure 563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G348500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGAAGAACCCGAAAGTTTTCTTTGACATATTGATTGGAAAGATGAAGGCGGGCCGAGTTGTAGTGGAATTATTTTCTGATGTGACACCGAAAACTGCTGAAAATTTTCGGGCTCTTTGCACTGGAGATAAGGGGATTGGAGCAGCAGGGAAGCCACTGCACTTTAAGGGCTCTACATTTCATCGCATCATCCCGAATTTCATGTGTCAGGGTGGAGATTTCACAAGAGGTAATGGGACTGGAGGAGAGTCGATTTATGGCACGAAATTTGCAGATGAAAACTTCAAGTTGAAGCATACAGGGCCTGGAATTTTGTCCATGGCCAATGCTGGACCAAACACTAATGGTTCCCAGTTCTTCATTTGCACTGACAAGACCCCTTGGCTCGATGGAAAGCATGTCGTGTTTGGAAAAGTTGTAGAGGGCTATACTGTCGTTAAAGAGATGGAGAAAGTGGGTTCAGATAGTGGGACAACTTCTCAACCTGTTGTTATTGAAGATTGCGGTCAGATAAAAGATGAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005794 GO:0005829 GO:0006464 GO:0006807 GO:0007154 GO:0007165 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0012505 GO:0016018 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0023052 GO:0033218 GO:0036211 GO:0042221 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

176

Amino Acids

18.86

Weight (kDa)

8.31

Isoelectric Point (pI)

5.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56070 AT3G56070
fragaria_vesca	FvH4_4g00620 FvH4_4g00620 FvH4_6g02290
malus_domestica	MD04G1228500.v1.1
prunus_persica	Prupe.6G348500_v2.0.a1
pyrus_communis	pycom04g20270 pycom12g22510
rosa_chinensis	RchiOBHm_Chr3g0450041
rosa_laevigata	RLG00000025762 RLG00000025763
rosa_multiflora	Rmu_sc0002646.1_g000022
rosa_roxburghii	Rroxscaffold_6G00427830
rosa_rugosa	Rorug02G0625000
rosa_samantha	Rh3BG024700 Rh3DG024700
rosa_wichuraiana	Rw3G001920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	50, 504
AcoI	YGGCCR	1 cut(s)	321
AcsI	RAATTY	4 cut(s)	103, 196, 266, 309
AgsI	TTSAA	3 cut(s)	286, 292, 497
AjnI	CCWGG	1 cut(s)	304
AlwNI	CAGNNNCTG	1 cut(s)	305
AoxI	GGCC	3 cut(s)	52, 302, 321
ApeKI	GCWGC	1 cut(s)	143
ApoI	RAATTY	4 cut(s)	103, 196, 266, 309
Asp700I	GAANNNNTTC	2 cut(s)	17, 105
AspS9I	GGNCC	3 cut(s)	52, 302, 332
AvaII	GGWCC	1 cut(s)	332
BalI	TGGCCA	1 cut(s)	323
BanII	GRGCYC	2 cut(s)	115, 173
BbvI	GCAGC	1 cut(s)	155
BccI	CCATC	2 cut(s)	383, 439
BciT130I	CCWGG	1 cut(s)	306
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
Bme1390I	CCNGG	1 cut(s)	306
Bme18I	GGWCC	1 cut(s)	332
BmgT120I	GGNCC	3 cut(s)	52, 302, 332
BmiI	GGNNCC	1 cut(s)	349
BmrFI	CCNGG	1 cut(s)	306
BmrI	ACTGGG	1 cut(s)	346
BmsI	GCATC	1 cut(s)	195
BmuI	ACTGGG	1 cut(s)	346
BpmI	CTGGAG	2 cut(s)	144, 261
BsaJI	CCNNGG	2 cut(s)	318, 380
Bse1I	ACTGG	3 cut(s)	127, 244, 352
BseBI	CCWGG	1 cut(s)	306
BseDI	CCNNGG	2 cut(s)	318, 380
BseGI	GGATG	1 cut(s)	189
BseNI	ACTGG	3 cut(s)	127, 244, 352
BseRI	GAGGAG	1 cut(s)	258
BseXI	GCAGC	1 cut(s)	155
BsgI	GTGCAG	1 cut(s)	143
BshFI	GGCC	3 cut(s)	54, 304, 323
BslFI	GGGAC	2 cut(s)	250, 484
BsmFI	GGGAC	2 cut(s)	250, 484
BsnI	GGCC	3 cut(s)	54, 304, 323
Bsp1286I	GDGCHC	2 cut(s)	115, 173
Bsp19I	CCATGG	1 cut(s)	318
BspACI	CCGC	2 cut(s)	50, 504
BspANI	GGCC	3 cut(s)	54, 304, 323
BspLI	GGNNCC	1 cut(s)	349
BsrI	ACTGG	3 cut(s)	127, 244, 352
BssECI	CCNNGG	2 cut(s)	318, 380
BssT1I	CCWWGG	2 cut(s)	318, 380
Bst2UI	CCWGG	1 cut(s)	306
Bst4CI	ACNGT	1 cut(s)	433
BstC8I	GCNNGC	1 cut(s)	52
BstDSI	CCRYGG	1 cut(s)	318
BstF5I	GGATG	1 cut(s)	189
BstMWI	GCNNNNNNNGC	1 cut(s)	301
BstNI	CCWGG	1 cut(s)	306
BstNSI	RCATGY	1 cut(s)	401
BstSCI	CCNGG	1 cut(s)	304
BstV1I	GCAGC	1 cut(s)	155
BsuRI	GGCC	3 cut(s)	54, 304, 323
BtgI	CCRYGG	1 cut(s)	318
BtgZI	GCGATG	1 cut(s)	167
BtsCI	GGATG	1 cut(s)	189
BtsI	GCAGTG	1 cut(s)	155
BtsIMutI	CAGTG	3 cut(s)	120, 155, 366
Cac8I	GCNNGC	1 cut(s)	52
CaiI	CAGNNNCTG	1 cut(s)	305
Cfr13I	GGNCC	3 cut(s)	52, 302, 332
CviAII	CATG	3 cut(s)	202, 319, 398
CviJI	RGCY	8 cut(s)	54, 113, 154, 171, 304, 323, 385, 426
CviKI_1	RGCY	8 cut(s)	54, 113, 154, 171, 304, 323, 385, 426
EaeI	YGGCCR	1 cut(s)	321
Eco130I	CCWWGG	2 cut(s)	318, 380
Eco24I	GRGCYC	2 cut(s)	115, 173
Eco47I	GGWCC	1 cut(s)	332
EcoO109I	RGGNCCY	1 cut(s)	302
EcoRII	CCWGG	1 cut(s)	304
EcoT14I	CCWWGG	2 cut(s)	318, 380
EcoT38I	GRGCYC	2 cut(s)	115, 173
ErhI	CCWWGG	2 cut(s)	318, 380
FaeI	CATG	3 cut(s)	205, 322, 401
FaiI	YATR	7 cut(s)	29, 203, 258, 297, 320, 399, 429
FaqI	GGGAC	2 cut(s)	250, 484
FatI	CATG	3 cut(s)	201, 318, 397
FauI	CCCGC	1 cut(s)	43
Fnu4HI	GCNGC	1 cut(s)	144
FokI	GGATG	1 cut(s)	176
FriOI	GRGCYC	2 cut(s)	115, 173
Fsp4HI	GCNGC	1 cut(s)	144
GluI	GCNGC	1 cut(s)	144
GsuI	CTGGAG	2 cut(s)	144, 261
HaeIII	GGCC	3 cut(s)	54, 304, 323
Hin1II	CATG	3 cut(s)	205, 322, 401
HinfI	GANTC	1 cut(s)	248
Hpy188I	TCNGA	3 cut(s)	79, 463, 510
Hpy188III	TCNNGA	1 cut(s)	193
HpyAV	CCTTC	1 cut(s)	40
HpyCH4III	ACNGT	1 cut(s)	433
HpyCH4V	TGCA	4 cut(s)	120, 160, 272, 366
HpyF10VI	GCNNNNNNNGC	1 cut(s)	301
Hsp92II	CATG	3 cut(s)	205, 322, 401
LmnI	GCTCC	1 cut(s)	140
Lsp1109I	GCAGC	1 cut(s)	155
LweI	GCATC	1 cut(s)	195
MaeIII	GTNAC	1 cut(s)	82
MboII	GAAGA	3 cut(s)	16, 349, 509
MhlI	GDGCHC	2 cut(s)	115, 173
MlsI	TGGCCA	1 cut(s)	323
MluCI	AATT	6 cut(s)	68, 103, 196, 266, 309, 523
MluNI	TGGCCA	1 cut(s)	323
MlyI	GAGTC	1 cut(s)	257
MnlI	CCTC	3 cut(s)	221, 236, 415
Mox20I	TGGCCA	1 cut(s)	323
MroXI	GAANNNNTTC	2 cut(s)	17, 105
MscI	TGGCCA	1 cut(s)	323
MseI	TTAA	2 cut(s)	165, 438
Msp20I	TGGCCA	1 cut(s)	323
MspR9I	CCNGG	1 cut(s)	306
MvaI	CCWGG	1 cut(s)	306
MwoI	GCNNNNNNNGC	1 cut(s)	301
NcoI	CCATGG	1 cut(s)	318
NlaIII	CATG	3 cut(s)	205, 322, 401
NlaIV	GGNNCC	1 cut(s)	349
NmeAIII	GCCGAG	1 cut(s)	80
NmuCI	GTSAC	1 cut(s)	82
NspI	RCATGY	1 cut(s)	401
PdmI	GAANNNNTTC	2 cut(s)	17, 105
PkrI	GCNGC	1 cut(s)	145
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
Psp6I	CCWGG	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	304
PspN4I	GGNNCC	1 cut(s)	349
PspPI	GGNCC	3 cut(s)	52, 302, 332
PstNI	CAGNNNCTG	1 cut(s)	305
SaqAI	TTAA	2 cut(s)	165, 438
SatI	GCNGC	1 cut(s)	144
Sau96I	GGNCC	3 cut(s)	52, 302, 332
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	1 cut(s)	306
SduI	GDGCHC	2 cut(s)	115, 173
SetI	ASST	2 cut(s)	232, 487
SfaNI	GCATC	1 cut(s)	195
SinI	GGWCC	1 cut(s)	332
Sse9I	AATT	6 cut(s)	68, 103, 196, 266, 309, 523
SsiI	CCGC	2 cut(s)	50, 504
StyD4I	CCNGG	1 cut(s)	304
StyI	CCWWGG	2 cut(s)	318, 380
TaaI	ACNGT	1 cut(s)	433
TaqI	TCGA	2 cut(s)	251, 387
TasI	AATT	6 cut(s)	68, 103, 196, 266, 309, 523
Tru1I	TTAA	2 cut(s)	165, 438
Tru9I	TTAA	2 cut(s)	165, 438
TscAI	CASTG	3 cut(s)	127, 162, 373
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	1 cut(s)	143
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	6 cut(s)	17, 59, 170, 190, 291, 349
TspRI	CASTG	3 cut(s)	127, 162, 373
VpaK11BI	GGWCC	1 cut(s)	332
XapI	RAATTY	4 cut(s)	103, 196, 266, 309
XceI	RCATGY	1 cut(s)	401
XmnI	GAANNNNTTC	2 cut(s)	17, 105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.