Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0012738

Physical Location & Seq

Genomic Coordinates Forward (+)

48128607 .. 48129131

Gene Structure 525 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025763

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGTCGAATCCAAAGGTTTTCTTTGATATACTGATTGGAAGGATGAAGGCGGGTCGCATTGTAATGGAGTTATTTGCTGATGTGACACCAAAAACTGCTGAGAACTTCCGTGCCTTTTGCACTGGTGATAAGGGAATCGGAATGTGCGGGAAGCCACTGCACTACAAGGGCTCTGTATTTCACCGCATTATCCCGAATTTTATGTGTCAGGGTGGAGATTTCATAAGGGGTGATGGGACTGGAGGACAATCAATCTATGGCGCGTATTTTGAGGATGAGAACTTCAAGCTCAAGCATACAGGACCCGGGATTCTGTCCATGGCAAATTGTGGACCAAACAGCAATAGTTCTCAGTTCTTCATTTGCACAAAGAGGACCCCGTGGCTTGATGGAAAGCATGTTGTGTTTGGGAAAGTGGTTGATGGTTATAGCATTGTTCAGAAGATGGAAAAGGTTGGTTCAGATTACGGGAGGACTACAGAACCTGTGGTTATTGAAGATTGTGGTCAGATAACAGAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005794 GO:0005829 GO:0006464 GO:0006807 GO:0007154 GO:0007165 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0012505 GO:0016018 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0023052 GO:0033218 GO:0036211 GO:0042221 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

175

Amino Acids

19.17

Weight (kDa)

7.6

Isoelectric Point (pI)

22.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	14 - 169	7e-50	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56070 AT3G56070
fragaria_vesca	FvH4_4g00620 FvH4_4g00620 FvH4_6g02290
malus_domestica	MD04G1228500.v1.1
prunus_persica	Prupe.6G348500_v2.0.a1
pyrus_communis	pycom04g20270 pycom12g22510
rosa_chinensis	RchiOBHm_Chr3g0450041
rosa_laevigata	RLG00000025762 RLG00000025763
rosa_multiflora	Rmu_sc0002646.1_g000022
rosa_roxburghii	Rroxscaffold_6G00427830
rosa_rugosa	Rorug02G0625000
rosa_samantha	Rh3BG024700 Rh3DG024700
rosa_wichuraiana	Rw3G001920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	263
AciI	CCGC	3 cut(s)	50, 147, 184
AcsI	RAATTY	1 cut(s)	196
AgsI	TTSAA	2 cut(s)	286, 497
AluBI	AGCT	1 cut(s)	289
AluI	AGCT	1 cut(s)	289
AlwNI	CAGNNNCTG	1 cut(s)	485
Ama87I	CYCGRG	1 cut(s)	305
ApoI	RAATTY	1 cut(s)	196
AspLEI	GCGC	1 cut(s)	263
AspS9I	GGNCC	3 cut(s)	302, 332, 375
AsuC2I	CCSGG	2 cut(s)	306, 307
AsuHPI	GGTGA	3 cut(s)	137, 173, 242
AvaI	CYCGRG	1 cut(s)	305
AvaII	GGWCC	3 cut(s)	302, 332, 375
BanII	GRGCYC	1 cut(s)	173
BccI	CCATC	4 cut(s)	227, 383, 416, 439
BcnI	CCSGG	2 cut(s)	306, 307
BfmI	CTRYAG	1 cut(s)	477
Bme1390I	CCNGG	2 cut(s)	306, 307
Bme18I	GGWCC	3 cut(s)	302, 332, 375
BmeT110I	CYCGRG	1 cut(s)	305
BmgT120I	GGNCC	3 cut(s)	302, 332, 375
BmiI	GGNNCC	2 cut(s)	304, 377
BmrFI	CCNGG	2 cut(s)	306, 307
BpmI	CTGGAG	1 cut(s)	261
BpuEI	CTTGAG	1 cut(s)	275
BpuMI	CCSGG	2 cut(s)	306, 307
BsaJI	CCNNGG	3 cut(s)	305, 318, 380
Bse1I	ACTGG	2 cut(s)	127, 244
BseDI	CCNNGG	3 cut(s)	305, 318, 380
BseGI	GGATG	2 cut(s)	48, 280
BseMII	CTCAG	2 cut(s)	90, 365
BseNI	ACTGG	2 cut(s)	127, 244
BsgI	GTGCAG	1 cut(s)	143
Bsh1236I	CGCG	1 cut(s)	263
BsiHKCI	CYCGRG	1 cut(s)	305
BsiSI	CCGG	1 cut(s)	306
BslFI	GGGAC	1 cut(s)	250
BsmFI	GGGAC	1 cut(s)	250
BsoBI	CYCGRG	1 cut(s)	305
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp19I	CCATGG	1 cut(s)	318
BspACI	CCGC	3 cut(s)	50, 147, 184
BspCNI	CTCAG	2 cut(s)	91, 364
BspFNI	CGCG	1 cut(s)	263
BspLI	GGNNCC	2 cut(s)	304, 377
BsrI	ACTGG	2 cut(s)	127, 244
BssECI	CCNNGG	3 cut(s)	305, 318, 380
BssT1I	CCWWGG	1 cut(s)	318
BstDEI	CTNAG	2 cut(s)	99, 351
BstDSI	CCRYGG	2 cut(s)	318, 380
BstF5I	GGATG	2 cut(s)	48, 280
BstFNI	CGCG	1 cut(s)	263
BstHHI	GCGC	1 cut(s)	263
BstNSI	RCATGY	1 cut(s)	401
BstSCI	CCNGG	2 cut(s)	304, 305
BstSFI	CTRYAG	1 cut(s)	477
BstUI	CGCG	1 cut(s)	263
BtgI	CCRYGG	2 cut(s)	318, 380
BtsCI	GGATG	2 cut(s)	48, 280
BtsI	GCAGTG	1 cut(s)	155
BtsIMutI	CAGTG	2 cut(s)	120, 155
CaiI	CAGNNNCTG	1 cut(s)	485
CfoI	GCGC	1 cut(s)	263
Cfr13I	GGNCC	3 cut(s)	302, 332, 375
Cfr9I	CCCGGG	1 cut(s)	305
CviAII	CATG	2 cut(s)	319, 398
CviJI	RGCY	4 cut(s)	154, 171, 289, 385
CviKI_1	RGCY	4 cut(s)	154, 171, 289, 385
DdeI	CTNAG	2 cut(s)	99, 351
Eco130I	CCWWGG	1 cut(s)	318
Eco24I	GRGCYC	1 cut(s)	173
Eco47I	GGWCC	3 cut(s)	302, 332, 375
Eco88I	CYCGRG	1 cut(s)	305
EcoO109I	RGGNCCY	2 cut(s)	302, 375
EcoT14I	CCWWGG	1 cut(s)	318
EcoT38I	GRGCYC	1 cut(s)	173
ErhI	CCWWGG	1 cut(s)	318
FaeI	CATG	2 cut(s)	322, 401
FaiI	YATR	8 cut(s)	29, 203, 224, 258, 297, 320, 399, 429
FalI	AAGNNNNNCTT	1 cut(s)	37
FaqI	GGGAC	1 cut(s)	250
FatI	CATG	2 cut(s)	318, 397
FauI	CCCGC	2 cut(s)	43, 140
FokI	GGATG	2 cut(s)	55, 287
FriOI	GRGCYC	1 cut(s)	173
GlaI	GCGC	1 cut(s)	262
GsuI	CTGGAG	1 cut(s)	261
HapII	CCGG	1 cut(s)	306
HhaI	GCGC	1 cut(s)	263
Hin1II	CATG	2 cut(s)	322, 401
Hin6I	GCGC	1 cut(s)	261
HinP1I	GCGC	1 cut(s)	261
HinfI	GANTC	3 cut(s)	7, 135, 310
HpaII	CCGG	1 cut(s)	306
HphI	GGTGA	3 cut(s)	137, 173, 242
Hpy166II	GTNNAC	1 cut(s)	332
Hpy188I	TCNGA	4 cut(s)	140, 441, 463, 510
Hpy188III	TCNNGA	1 cut(s)	193
Hpy8I	GTNNAC	1 cut(s)	332
HpyAV	CCTTC	2 cut(s)	33, 40
HpyCH4V	TGCA	3 cut(s)	120, 160, 366
HpyF3I	CTNAG	2 cut(s)	99, 351
Hsp92II	CATG	2 cut(s)	322, 401
HspAI	GCGC	1 cut(s)	261
LpnPI	CCDG	6 cut(s)	108, 194, 225, 285, 319, 498
MaeIII	GTNAC	1 cut(s)	82
MboII	GAAGA	3 cut(s)	349, 454, 509
MhlI	GDGCHC	1 cut(s)	173
MluCI	AATT	2 cut(s)	196, 325
MnlI	CCTC	5 cut(s)	236, 265, 366, 465, 511
MslI	CAYNNNNRTG	1 cut(s)	62
MspI	CCGG	1 cut(s)	306
MspR9I	CCNGG	2 cut(s)	306, 307
MvnI	CGCG	1 cut(s)	263
NciI	CCSGG	2 cut(s)	306, 307
NcoI	CCATGG	1 cut(s)	318
NlaIII	CATG	2 cut(s)	322, 401
NlaIV	GGNNCC	2 cut(s)	304, 377
NmuCI	GTSAC	1 cut(s)	82
NspI	RCATGY	1 cut(s)	401
PfeI	GAWTC	3 cut(s)	7, 135, 310
PpuMI	RGGWCCY	2 cut(s)	302, 375
Psp5II	RGGWCCY	2 cut(s)	302, 375
PspN4I	GGNNCC	2 cut(s)	304, 377
PspPI	GGNCC	3 cut(s)	302, 332, 375
PspPPI	RGGWCCY	2 cut(s)	302, 375
PstNI	CAGNNNCTG	1 cut(s)	485
RseI	CAYNNNNRTG	1 cut(s)	62
Sau96I	GGNCC	3 cut(s)	302, 332, 375
ScrFI	CCNGG	2 cut(s)	306, 307
SduI	GDGCHC	1 cut(s)	173
SetI	ASST	4 cut(s)	18, 291, 456, 487
SfcI	CTRYAG	1 cut(s)	477
SinI	GGWCC	3 cut(s)	302, 332, 375
SmaI	CCCGGG	1 cut(s)	307
SmiMI	CAYNNNNRTG	1 cut(s)	62
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	2 cut(s)	196, 325
SsiI	CCGC	3 cut(s)	50, 147, 184
StyD4I	CCNGG	2 cut(s)	304, 305
StyI	CCWWGG	1 cut(s)	318
TaqI	TCGA	1 cut(s)	5
TasI	AATT	2 cut(s)	196, 325
TfiI	GAWTC	3 cut(s)	7, 135, 310
TscAI	CASTG	2 cut(s)	127, 162
TseFI	GTSAC	1 cut(s)	82
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	3 cut(s)	59, 211, 349
TspGWI	ACGGA	1 cut(s)	98
TspMI	CCCGGG	1 cut(s)	305
TspRI	CASTG	2 cut(s)	127, 162
VpaK11BI	GGWCC	3 cut(s)	302, 332, 375
XapI	RAATTY	1 cut(s)	196
XceI	RCATGY	1 cut(s)	401
XmaI	CCCGGG	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.