Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0012738

Physical Location & Seq

Genomic Coordinates Forward (+)

30894118 .. 30895418

Gene Structure 1301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1228500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGAAGGCGGGTCGAGTTGTAATGGAGTTATTTGCTGACAAAACCCCGAAAACTGCTGAAAATTTCCGTGCTCTTTGCACTGGAGATAAAGGGATTGGATTATCAGGGAAGCCACTGCACTTTAAGGGCTCCACATTTCATCGCATTATCCCGAACTTCATGTGTCAGGGTGGAGATTTCACAAAAGGCAATGGGACCGGAGGAGAGTCAATTTATGGGGCGAAATTCGCTGATGAGAACTTCAACTTGAAGCATACCGGCCCTGGAATTTTGTCGATGGCGAATGCTGGACCTAATACCAATGGTTCACAGTTCTTCATTTGCACTGCAAGAACCCCATGGCTTGACGGAAAGCACGTTGTGTTTGGAAAAGTTGTTGATGGATACAGTGTTGTTGAGAAAATGGAGAAGGTGGGTTCGGAGAGTGGGACTACTTCTGAACCTGTTGTGATCGAAGACTGCGGCCAGGTAAAAGATGAGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005794 GO:0005829 GO:0006464 GO:0006807 GO:0007154 GO:0007165 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0012505 GO:0016018 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0023052 GO:0033218 GO:0036211 GO:0042221 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

162

Amino Acids

17.2

Weight (kDa)

6.89

Isoelectric Point (pI)

10.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	3 - 155	3.2e-50	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56070 AT3G56070
fragaria_vesca	FvH4_4g00620 FvH4_4g00620 FvH4_6g02290
malus_domestica	MD04G1228500.v1.1
prunus_persica	Prupe.6G348500_v2.0.a1
pyrus_communis	pycom04g20270 pycom12g22510
rosa_chinensis	RchiOBHm_Chr3g0450041
rosa_laevigata	RLG00000025762 RLG00000025763
rosa_multiflora	Rmu_sc0002646.1_g000022
rosa_roxburghii	Rroxscaffold_6G00427830
rosa_rugosa	Rorug02G0625000
rosa_samantha	Rh3BG024700 Rh3DG024700
rosa_wichuraiana	Rw3G001920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	8, 462
AcoI	YGGCCR	1 cut(s)	463
AcsI	RAATTY	3 cut(s)	61, 224, 267
AdeI	CACNNNGTG	1 cut(s)	361
AgsI	TTSAA	2 cut(s)	244, 250
AjnI	CCWGG	2 cut(s)	262, 465
Alw21I	GWGCWC	1 cut(s)	73
AoxI	GGCC	2 cut(s)	259, 463
ApoI	RAATTY	3 cut(s)	61, 224, 267
AspS9I	GGNCC	3 cut(s)	195, 260, 290
AvaII	GGWCC	2 cut(s)	195, 290
BanII	GRGCYC	1 cut(s)	131
BbsI	GAAGAC	1 cut(s)	462
Bbv12I	GWGCWC	1 cut(s)	73
BccI	CCATC	2 cut(s)	271, 374
BciT130I	CCWGG	2 cut(s)	264, 467
BciVI	GTATCC	1 cut(s)	377
BfuI	GTATCC	1 cut(s)	377
BisI	GCNGC	1 cut(s)	463
BlsI	GCNGC	1 cut(s)	464
Bme1390I	CCNGG	2 cut(s)	264, 467
Bme18I	GGWCC	2 cut(s)	195, 290
BmgT120I	GGNCC	3 cut(s)	195, 260, 290
BmiI	GGNNCC	2 cut(s)	130, 196
BmrFI	CCNGG	2 cut(s)	264, 467
BpiI	GAAGAC	1 cut(s)	462
BpmI	CTGGAG	1 cut(s)	102
BsaJI	CCNNGG	2 cut(s)	262, 338
BsaWI	WCCGGW	1 cut(s)	197
Bse118I	RCCGGY	1 cut(s)	257
Bse1I	ACTGG	1 cut(s)	85
Bse3DI	GCAATG	1 cut(s)	196
BseBI	CCWGG	2 cut(s)	264, 467
BseDI	CCNNGG	2 cut(s)	262, 338
BseMI	GCAATG	1 cut(s)	196
BseNI	ACTGG	1 cut(s)	85
BseRI	GAGGAG	1 cut(s)	216
BsgI	GTGCAG	1 cut(s)	101
BshFI	GGCC	2 cut(s)	261, 465
BsiHKAI	GWGCWC	1 cut(s)	73
BsiSI	CCGG	2 cut(s)	198, 258
BslFI	GGGAC	2 cut(s)	208, 442
BsmFI	GGGAC	2 cut(s)	208, 442
BsmI	GAATGC	1 cut(s)	289
BsnI	GGCC	2 cut(s)	261, 465
Bsp1286I	GDGCHC	2 cut(s)	73, 131
Bsp143I	GATC	1 cut(s)	450
Bsp19I	CCATGG	1 cut(s)	338
BspACI	CCGC	2 cut(s)	8, 462
BspANI	GGCC	2 cut(s)	261, 465
BspLI	GGNNCC	2 cut(s)	130, 196
BsrDI	GCAATG	1 cut(s)	196
BsrFI	RCCGGY	1 cut(s)	257
BsrI	ACTGG	1 cut(s)	85
BssAI	RCCGGY	1 cut(s)	257
BssECI	CCNNGG	2 cut(s)	262, 338
BssMI	GATC	1 cut(s)	450
BssT1I	CCWWGG	1 cut(s)	338
Bst2UI	CCWGG	2 cut(s)	264, 467
Bst4CI	ACNGT	2 cut(s)	312, 389
BstDSI	CCRYGG	1 cut(s)	338
BstKTI	GATC	1 cut(s)	453
BstMBI	GATC	1 cut(s)	450
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstNI	CCWGG	2 cut(s)	264, 467
BstSCI	CCNGG	2 cut(s)	262, 465
BstV2I	GAAGAC	1 cut(s)	462
BsuI	GTATCC	1 cut(s)	377
BsuRI	GGCC	2 cut(s)	261, 465
BtgI	CCRYGG	1 cut(s)	338
BtgZI	GCGATG	1 cut(s)	125
BtsI	GCAGTG	2 cut(s)	113, 324
BtsIMutI	CAGTG	4 cut(s)	78, 113, 324, 394
Cfr10I	RCCGGY	1 cut(s)	257
Cfr13I	GGNCC	3 cut(s)	195, 260, 290
CviAII	CATG	2 cut(s)	160, 339
CviJI	RGCY	5 cut(s)	112, 129, 261, 343, 465
CviKI_1	RGCY	5 cut(s)	112, 129, 261, 343, 465
DpnI	GATC	1 cut(s)	452
DpnII	GATC	1 cut(s)	450
DraIII	CACNNNGTG	1 cut(s)	361
EaeI	YGGCCR	1 cut(s)	463
Eco130I	CCWWGG	1 cut(s)	338
Eco24I	GRGCYC	1 cut(s)	131
Eco47I	GGWCC	2 cut(s)	195, 290
EcoRII	CCWGG	2 cut(s)	262, 465
EcoT14I	CCWWGG	1 cut(s)	338
EcoT38I	GRGCYC	1 cut(s)	131
ErhI	CCWWGG	1 cut(s)	338
FaeI	CATG	2 cut(s)	163, 342
FaiI	YATR	4 cut(s)	161, 216, 255, 340
FaqI	GGGAC	2 cut(s)	208, 442
FatI	CATG	2 cut(s)	159, 338
Fnu4HI	GCNGC	1 cut(s)	463
FriOI	GRGCYC	1 cut(s)	131
Fsp4HI	GCNGC	1 cut(s)	463
GluI	GCNGC	1 cut(s)	463
GsuI	CTGGAG	1 cut(s)	102
HaeIII	GGCC	2 cut(s)	261, 465
HapII	CCGG	2 cut(s)	198, 258
Hin1II	CATG	2 cut(s)	163, 342
HinfI	GANTC	1 cut(s)	206
HpaII	CCGG	2 cut(s)	198, 258
Hpy166II	GTNNAC	1 cut(s)	308
Hpy188I	TCNGA	2 cut(s)	421, 439
Hpy188III	TCNNGA	1 cut(s)	151
Hpy8I	GTNNAC	1 cut(s)	308
HpyAV	CCTTC	1 cut(s)	403
HpyCH4III	ACNGT	2 cut(s)	312, 389
HpyCH4IV	ACGT	1 cut(s)	357
HpyCH4V	TGCA	4 cut(s)	78, 118, 324, 329
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
HpySE526I	ACGT	1 cut(s)	357
Hsp92II	CATG	2 cut(s)	163, 342
Kzo9I	GATC	1 cut(s)	450
LmnI	GCTCC	1 cut(s)	134
MaeII	ACGT	1 cut(s)	357
MalI	GATC	1 cut(s)	452
MboI	GATC	1 cut(s)	450
MboII	GAAGA	2 cut(s)	307, 467
MhlI	GDGCHC	2 cut(s)	73, 131
MluCI	AATT	4 cut(s)	61, 210, 224, 267
MlyI	GAGTC	1 cut(s)	215
MnlI	CCTC	1 cut(s)	194
MseI	TTAA	1 cut(s)	123
MspI	CCGG	2 cut(s)	198, 258
MspR9I	CCNGG	2 cut(s)	264, 467
Mva1269I	GAATGC	1 cut(s)	289
MvaI	CCWGG	2 cut(s)	264, 467
MwoI	GCNNNNNNNGC	1 cut(s)	227
NcoI	CCATGG	1 cut(s)	338
NdeII	GATC	1 cut(s)	450
NlaIII	CATG	2 cut(s)	163, 342
NlaIV	GGNNCC	2 cut(s)	130, 196
PcsI	WCGNNNNNNNCGW	1 cut(s)	354
PctI	GAATGC	1 cut(s)	289
PkrI	GCNGC	1 cut(s)	464
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
Psp6I	CCWGG	2 cut(s)	262, 465
PspGI	CCWGG	2 cut(s)	262, 465
PspN4I	GGNNCC	2 cut(s)	130, 196
PspPI	GGNCC	3 cut(s)	195, 260, 290
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	1 cut(s)	463
Sau3AI	GATC	1 cut(s)	450
Sau96I	GGNCC	3 cut(s)	195, 260, 290
SchI	GAGTC	1 cut(s)	215
ScrFI	CCNGG	2 cut(s)	264, 467
SduI	GDGCHC	2 cut(s)	73, 131
SetI	ASST	5 cut(s)	295, 360, 414, 445, 471
SinI	GGWCC	2 cut(s)	195, 290
Sse9I	AATT	4 cut(s)	61, 210, 224, 267
SsiI	CCGC	2 cut(s)	8, 462
StyD4I	CCNGG	2 cut(s)	262, 465
StyI	CCWWGG	1 cut(s)	338
TaaI	ACNGT	2 cut(s)	312, 389
TaiI	ACGT	1 cut(s)	360
TaqI	TCGA	3 cut(s)	13, 275, 453
TasI	AATT	4 cut(s)	61, 210, 224, 267
TauI	GCSGC	1 cut(s)	465
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	4 cut(s)	85, 120, 331, 394
TspDTI	ATGAA	4 cut(s)	17, 128, 148, 307
TspGWI	ACGGA	2 cut(s)	56, 363
TspRI	CASTG	4 cut(s)	85, 120, 331, 394
VpaK11BI	GGWCC	2 cut(s)	195, 290
XapI	RAATTY	3 cut(s)	61, 224, 267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.