Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0012738

Physical Location & Seq

Genomic Coordinates Reverse (-)

74075191 .. 74076180

Gene Structure 990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0625000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGTGCACAACATTGACCTTTCAAACCACACCGTGTCCATTCACGGTCACAACTTTCCCGTCAATGCCTTGGAGTTTAGCGGTATAATGGGAGTGCTTGACTGGGGTGCAGAGATCGAGCTGGGGGCTACCACAAATGCGAGAGAATACAGTGTGTTTGTGCAGGACTTGTGCGACGGAGAAGGTCGGATACAGGTCTATCTGATGAAGGAGATTGTCATTAACCGGGGTGATGTGGACGACACGTTCCGTATTGCATTTACAATGCTTGCAATTGCTCTCGTGCTTTGCCCAGGCACGGGAGAGGACGTCGATCCGTCCTTCGTACTCCAGCTTCTGGACACGGGGAAGATTAGGAACAAAAATTGGGCTTCATTCTGTGTGAAAACATTACTGGAAGCTGTGACTGCTCAGCGGGGATCTGGTGATGGTGTAATTGGTGGGTGCGTTCTGTTTCTGCAGACCCTTTATTTTGATAAGGTTGGGGATTCCATGTTTCACGTGGATAGGTCTGTCTTGCTAGTCACAGGGTGGGGTGACTTTGAGGTGAGGGAGCTGATTAGCAGGATCAGGTGCCTTGGAGGCTTCAAGAGCCCAATTGTTTTGATGGAAAGGAGTAAGCGTTCGAAGATGGCAACAAAGTGCGATGTGGATGACGGTGAGTTTGGGCTTGGACTGAGGAAGGGGGTTCATGAGGACATTTTTGATATCAAGCTAGACATGATGGGTGTTAAGGGTGACATCAGCAGGCTTAATGGGATTGTCGGAAGGCTGCAGCTAGACATGGCTGACCTGACAGGGAAAGTGGACATCATAGCACGGGAGTTACGTAGCAGGAAGAAAGAAGCTGCACAGATGGTGAGGCATGAGACGCGGCAAGTACTGTCCGAAAGATGGGACACTTGCAACCTTCGATCTGTCCCGGTGTGGACGCCGCCGCGGAACGACGTTAGGCAAAATGGGAAGTCCGTGCGGGATGCTGCAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005794 GO:0005829 GO:0006464 GO:0006807 GO:0007154 GO:0007165 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0012505 GO:0016018 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0023052 GO:0033218 GO:0036211 GO:0042221 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

329

Amino Acids

36.63

Weight (kDa)

6.02

Isoelectric Point (pI)

29.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56070 AT3G56070
fragaria_vesca	FvH4_4g00620 FvH4_4g00620 FvH4_6g02290
malus_domestica	MD04G1228500.v1.1
prunus_persica	Prupe.6G348500_v2.0.a1
pyrus_communis	pycom04g20270 pycom12g22510
rosa_chinensis	RchiOBHm_Chr3g0450041
rosa_laevigata	RLG00000025762 RLG00000025763
rosa_multiflora	Rmu_sc0002646.1_g000022
rosa_roxburghii	Rroxscaffold_6G00427830
rosa_rugosa	Rorug02G0625000
rosa_samantha	Rh3BG024700 Rh3DG024700
rosa_wichuraiana	Rw3G001920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	312
AccB1I	GGYRCC	1 cut(s)	573
AccB7I	CCANNNNNTGG	1 cut(s)	337
AccII	CGCG	2 cut(s)	874, 940
AciI	CCGC	7 cut(s)	81, 415, 874, 935, 938, 940, 973
AclWI	GGATC	3 cut(s)	308, 427, 575
AcvI	CACGTG	1 cut(s)	502
AcyI	GRCGYC	2 cut(s)	309, 932
AdeI	CACNNNGTG	2 cut(s)	34, 531
AfaI	GTAC	2 cut(s)	327, 882
AfiI	CCNNNNNNNGG	4 cut(s)	298, 299, 337, 894
AflIII	ACRYGT	1 cut(s)	243
AgsI	TTSAA	2 cut(s)	24, 589
AjnI	CCWGG	1 cut(s)	292
AloI	GAACNNNNNNTCC	4 cut(s)	230, 262, 607, 639
AluBI	AGCT	7 cut(s)	121, 334, 401, 556, 715, 778, 848
AluI	AGCT	7 cut(s)	121, 334, 401, 556, 715, 778, 848
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	1 cut(s)	863
Alw44I	GTGCAC	1 cut(s)	5
AlwI	GGATC	3 cut(s)	308, 427, 575
AlwNI	CAGNNNCTG	1 cut(s)	337
ApaLI	GTGCAC	1 cut(s)	5
ApeKI	GCWGC	4 cut(s)	772, 775, 848, 980
ArsI	GACNNNNNNTTYG	2 cut(s)	647, 679
AsuC2I	CCSGG	2 cut(s)	227, 923
AsuHPI	GGTGA	7 cut(s)	242, 437, 548, 559, 671, 749, 871
AsuII	TTCGAA	1 cut(s)	626
BaeGI	GKGCMC	1 cut(s)	9
BanI	GGYRCC	1 cut(s)	573
BanII	GRGCYC	1 cut(s)	596
BarI	GAAGNNNNNNTAC	4 cut(s)	174, 206, 318, 350
BauI	CACGAG	1 cut(s)	281
BbrPI	CACGTG	1 cut(s)	502
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	4 cut(s)	759, 787, 835, 967
BccI	CCATC	6 cut(s)	422, 601, 625, 718, 850, 888
BciT130I	CCWGG	1 cut(s)	294
BciVI	GTATCC	1 cut(s)	183
BcnI	CCSGG	2 cut(s)	227, 923
BcoDI	GTCTC	1 cut(s)	863
BfaI	CTAG	3 cut(s)	521, 716, 779
BfmI	CTRYAG	2 cut(s)	458, 773
BfuI	GTATCC	1 cut(s)	183
BglI	GCCNNNNNGGC	1 cut(s)	582
BisI	GCNGC	7 cut(s)	773, 776, 849, 875, 935, 938, 981
BlpI	GCTNAGC	1 cut(s)	411
BlsI	GCNGC	7 cut(s)	774, 777, 850, 876, 936, 939, 982
BmcAI	AGTACT	1 cut(s)	882
Bme1390I	CCNGG	3 cut(s)	227, 294, 923
BmiI	GGNNCC	1 cut(s)	575
BmrFI	CCNGG	3 cut(s)	227, 294, 923
BmrI	ACTGGG	1 cut(s)	112
BmsI	GCATC	1 cut(s)	967
BmuI	ACTGGG	1 cut(s)	112
BpmI	CTGGAG	1 cut(s)	314
Bpu1102I	GCTNAGC	1 cut(s)	411
Bpu14I	TTCGAA	1 cut(s)	626
BpuMI	CCSGG	2 cut(s)	227, 923
BsaAI	YACGTR	2 cut(s)	502, 830
BsaHI	GRCGYC	2 cut(s)	309, 932
BsaJI	CCNNGG	5 cut(s)	69, 226, 292, 577, 938
BsaXI	ACNNNNNCTCC	4 cut(s)	294, 324, 607, 637
Bsc4I	CCNNNNNNNGG	4 cut(s)	298, 299, 337, 894
Bse1I	ACTGG	2 cut(s)	107, 399
BseBI	CCWGG	1 cut(s)	294
BseDI	CCNNGG	5 cut(s)	69, 226, 292, 577, 938
BseGI	GGATG	2 cut(s)	658, 982
BseLI	CCNNNNNNNGG	4 cut(s)	298, 299, 337, 894
BseMII	CTCAG	2 cut(s)	425, 668
BseNI	ACTGG	2 cut(s)	107, 399
BseSI	GKGCMC	1 cut(s)	9
BseXI	GCAGC	4 cut(s)	759, 787, 835, 967
BseYI	CCCAGC	1 cut(s)	121
BsgI	GTGCAG	3 cut(s)	129, 182, 834
Bsh1236I	CGCG	2 cut(s)	874, 940
BshNI	GGYRCC	1 cut(s)	573
BsiHKAI	GWGCWC	1 cut(s)	9
BsiSI	CCGG	2 cut(s)	226, 923
BslFI	GGGAC	2 cut(s)	905, 911
BslI	CCNNNNNNNGG	4 cut(s)	298, 299, 337, 894
BsmAI	GTCTC	1 cut(s)	863
BsmBI	CGTCTC	1 cut(s)	863
BsmFI	GGGAC	2 cut(s)	905, 911
Bsp119I	TTCGAA	1 cut(s)	626
Bsp1286I	GDGCHC	2 cut(s)	9, 596
Bsp143I	GATC	5 cut(s)	114, 313, 419, 567, 914
Bsp1720I	GCTNAGC	1 cut(s)	411
BspACI	CCGC	7 cut(s)	81, 415, 874, 935, 938, 940, 973
BspCNI	CTCAG	2 cut(s)	424, 669
BspFNI	CGCG	2 cut(s)	874, 940
BspHI	TCATGA	1 cut(s)	691
BspLI	GGNNCC	1 cut(s)	575
BspMAI	CTGCAG	2 cut(s)	462, 777
BspPI	GGATC	3 cut(s)	308, 427, 575
BspT104I	TTCGAA	1 cut(s)	626
BspT107I	GGYRCC	1 cut(s)	573
BsrI	ACTGG	2 cut(s)	107, 399
BssECI	CCNNGG	5 cut(s)	69, 226, 292, 577, 938
BssMI	GATC	5 cut(s)	114, 313, 419, 567, 914
BssNI	GRCGYC	2 cut(s)	309, 932
BssSI	CACGAG	1 cut(s)	281
BssT1I	CCWWGG	2 cut(s)	69, 577
Bst2BI	CACGAG	1 cut(s)	281
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	5 cut(s)	34, 47, 152, 659, 885
BstACI	GRCGYC	2 cut(s)	309, 932
BstBAI	YACGTR	2 cut(s)	502, 830
BstBI	TTCGAA	1 cut(s)	626
BstC8I	GCNNGC	2 cut(s)	270, 749
BstDEI	CTNAG	2 cut(s)	411, 677
BstDSI	CCRYGG	1 cut(s)	938
BstF5I	GGATG	2 cut(s)	658, 982
BstFNI	CGCG	2 cut(s)	874, 940
BstKTI	GATC	5 cut(s)	117, 316, 422, 570, 917
BstMAI	GTCTC	1 cut(s)	863
BstMBI	GATC	5 cut(s)	114, 313, 419, 567, 914
BstMWI	GCNNNNNNNGC	4 cut(s)	407, 582, 591, 871
BstNI	CCWGG	1 cut(s)	294
BstSCI	CCNGG	3 cut(s)	225, 292, 921
BstSFI	CTRYAG	2 cut(s)	458, 773
BstSLI	GKGCMC	1 cut(s)	9
BstSNI	TACGTA	1 cut(s)	830
BstUI	CGCG	2 cut(s)	874, 940
BstV1I	GCAGC	4 cut(s)	759, 787, 835, 967
BstX2I	RGATCY	1 cut(s)	419
BstYI	RGATCY	1 cut(s)	419
BsuI	GTATCC	1 cut(s)	183
BtgI	CCRYGG	1 cut(s)	938
BtgZI	GCGATG	1 cut(s)	660
BtsCI	GGATG	2 cut(s)	658, 982
BtsIMutI	CAGTG	1 cut(s)	157
Cac8I	GCNNGC	2 cut(s)	270, 749
CaiI	CAGNNNCTG	1 cut(s)	337
CciI	TCATGA	1 cut(s)	691
Cfr42I	CCGCGG	1 cut(s)	941
CseI	GACGC	2 cut(s)	880, 940
Csp6I	GTAC	2 cut(s)	326, 881
CviAII	CATG	5 cut(s)	493, 692, 721, 784, 866
CviQI	GTAC	2 cut(s)	326, 881
DdeI	CTNAG	2 cut(s)	411, 677
DpnI	GATC	5 cut(s)	116, 315, 421, 569, 916
DpnII	GATC	5 cut(s)	114, 313, 419, 567, 914
DraIII	CACNNNGTG	2 cut(s)	34, 531
Eco105I	TACGTA	1 cut(s)	830
Eco130I	CCWWGG	2 cut(s)	69, 577
Eco24I	GRGCYC	1 cut(s)	596
Eco32I	GATATC	1 cut(s)	709
Eco72I	CACGTG	1 cut(s)	502
EcoRII	CCWGG	1 cut(s)	292
EcoRV	GATATC	1 cut(s)	709
EcoT14I	CCWWGG	2 cut(s)	69, 577
EcoT38I	GRGCYC	1 cut(s)	596
ErhI	CCWWGG	2 cut(s)	69, 577
Esp3I	CGTCTC	1 cut(s)	863
FaeI	CATG	5 cut(s)	496, 695, 724, 787, 869
FaiI	YATR	8 cut(s)	86, 494, 693, 722, 785, 815, 867, 988
FaqI	GGGAC	2 cut(s)	905, 911
FatI	CATG	5 cut(s)	492, 691, 720, 783, 865
FauI	CCCGC	2 cut(s)	408, 966
Fnu4HI	GCNGC	7 cut(s)	773, 776, 849, 875, 935, 938, 981
FokI	GGATG	1 cut(s)	665
FriOI	GRGCYC	1 cut(s)	596
Fsp4HI	GCNGC	7 cut(s)	773, 776, 849, 875, 935, 938, 981
FspBI	CTAG	3 cut(s)	521, 716, 779
GluI	GCNGC	7 cut(s)	773, 776, 849, 875, 935, 938, 981
GsaI	CCCAGC	1 cut(s)	125
GsuI	CTGGAG	1 cut(s)	314
HapII	CCGG	2 cut(s)	226, 923
HgaI	GACGC	2 cut(s)	880, 940
Hin1I	GRCGYC	2 cut(s)	309, 932
Hin1II	CATG	5 cut(s)	496, 695, 724, 787, 869
HinfI	GANTC	1 cut(s)	488
HpaII	CCGG	2 cut(s)	226, 923
HphI	GGTGA	7 cut(s)	242, 437, 548, 559, 671, 749, 871
Hpy166II	GTNNAC	4 cut(s)	7, 238, 808, 930
Hpy188I	TCNGA	4 cut(s)	189, 204, 767, 889
Hpy188III	TCNNGA	3 cut(s)	338, 589, 692
Hpy8I	GTNNAC	4 cut(s)	7, 238, 808, 930
Hpy99I	CGWCG	3 cut(s)	179, 314, 950
HpyAV	CCTTC	6 cut(s)	176, 202, 331, 676, 762, 920
HpyCH4III	ACNGT	5 cut(s)	34, 47, 152, 659, 885
HpyCH4IV	ACGT	5 cut(s)	245, 309, 501, 829, 948
HpyF10VI	GCNNNNNNNGC	4 cut(s)	407, 582, 591, 871
HpyF3I	CTNAG	2 cut(s)	411, 677
HpySE526I	ACGT	5 cut(s)	245, 309, 501, 829, 948
Hsp92I	GRCGYC	2 cut(s)	309, 932
Hsp92II	CATG	5 cut(s)	496, 695, 724, 787, 869
KspI	CCGCGG	1 cut(s)	941
Kzo9I	GATC	5 cut(s)	114, 313, 419, 567, 914
LmnI	GCTCC	1 cut(s)	553
Lsp1109I	GCAGC	4 cut(s)	759, 787, 835, 967
LweI	GCATC	1 cut(s)	967
MaeI	CTAG	3 cut(s)	521, 716, 779
MaeII	ACGT	5 cut(s)	245, 309, 501, 829, 948
MaeIII	GTNAC	6 cut(s)	47, 403, 523, 536, 737, 825
MalI	GATC	5 cut(s)	116, 315, 421, 569, 916
MboI	GATC	5 cut(s)	114, 313, 419, 567, 914
MboII	GAAGA	3 cut(s)	361, 640, 850
MfeI	CAATTG	2 cut(s)	273, 597
MflI	RGATCY	1 cut(s)	419
MhlI	GDGCHC	2 cut(s)	9, 596
MluCI	AATT	4 cut(s)	273, 364, 435, 597
MmeI	TCCRAC	2 cut(s)	167, 745
MnlI	CCTC	7 cut(s)	298, 538, 543, 575, 672, 688, 855
MseI	TTAA	3 cut(s)	222, 732, 753
MspA1I	CMGCKG	2 cut(s)	415, 940
MspI	CCGG	2 cut(s)	226, 923
MspR9I	CCNGG	3 cut(s)	227, 294, 923
MunI	CAATTG	2 cut(s)	273, 597
MvaI	CCWGG	1 cut(s)	294
MvnI	CGCG	2 cut(s)	874, 940
MwoI	GCNNNNNNNGC	4 cut(s)	407, 582, 591, 871
NciI	CCSGG	2 cut(s)	227, 923
NdeII	GATC	5 cut(s)	114, 313, 419, 567, 914
NlaIII	CATG	5 cut(s)	496, 695, 724, 787, 869
NlaIV	GGNNCC	1 cut(s)	575
NmuCI	GTSAC	5 cut(s)	47, 403, 523, 536, 737
NspV	TTCGAA	1 cut(s)	626
PagI	TCATGA	1 cut(s)	691
PcsI	WCGNNNNNNNCGW	1 cut(s)	826
PfeI	GAWTC	1 cut(s)	488
PflMI	CCANNNNNTGG	1 cut(s)	337
PkrI	GCNGC	7 cut(s)	774, 777, 850, 876, 936, 939, 982
PmaCI	CACGTG	1 cut(s)	502
PmlI	CACGTG	1 cut(s)	502
Ppu21I	YACGTR	2 cut(s)	502, 830
Psp6I	CCWGG	1 cut(s)	292
PspCI	CACGTG	1 cut(s)	502
PspFI	CCCAGC	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	292
PspN4I	GGNNCC	1 cut(s)	575
PstI	CTGCAG	2 cut(s)	462, 777
PstNI	CAGNNNCTG	1 cut(s)	337
PsuI	RGATCY	1 cut(s)	419
RsaI	GTAC	2 cut(s)	327, 882
RsaNI	GTAC	2 cut(s)	326, 881
SacII	CCGCGG	1 cut(s)	941
SaqAI	TTAA	3 cut(s)	222, 732, 753
SatI	GCNGC	7 cut(s)	773, 776, 849, 875, 935, 938, 981
Sau3AI	GATC	5 cut(s)	114, 313, 419, 567, 914
ScaI	AGTACT	1 cut(s)	882
ScrFI	CCNGG	3 cut(s)	227, 294, 923
SduI	GDGCHC	2 cut(s)	9, 596
SfaNI	GCATC	1 cut(s)	967
SfcI	CTRYAG	2 cut(s)	458, 773
Sfr303I	CCGCGG	1 cut(s)	941
SfuI	TTCGAA	1 cut(s)	626
SgrBI	CCGCGG	1 cut(s)	941
SnaBI	TACGTA	1 cut(s)	830
Sse9I	AATT	4 cut(s)	273, 364, 435, 597
SsiI	CCGC	7 cut(s)	81, 415, 874, 935, 938, 940, 973
SspMI	CTAG	3 cut(s)	521, 716, 779
StyD4I	CCNGG	3 cut(s)	225, 292, 921
StyI	CCWWGG	2 cut(s)	69, 577
TaaI	ACNGT	5 cut(s)	34, 47, 152, 659, 885
TaiI	ACGT	5 cut(s)	248, 312, 504, 832, 951
TaqI	TCGA	4 cut(s)	117, 312, 626, 913
TasI	AATT	4 cut(s)	273, 364, 435, 597
TatI	WGTACW	1 cut(s)	880
TauI	GCSGC	3 cut(s)	877, 937, 940
TfiI	GAWTC	1 cut(s)	488
Tru1I	TTAA	3 cut(s)	222, 732, 753
Tru9I	TTAA	3 cut(s)	222, 732, 753
TscAI	CASTG	1 cut(s)	157
TseFI	GTSAC	5 cut(s)	47, 403, 523, 536, 737
TseI	GCWGC	4 cut(s)	772, 775, 848, 980
Tsp45I	GTSAC	5 cut(s)	47, 403, 523, 536, 737
TspDTI	ATGAA	3 cut(s)	221, 363, 680
TspGWI	ACGGA	4 cut(s)	192, 239, 306, 958
TspRI	CASTG	1 cut(s)	157
Van91I	CCANNNNNTGG	1 cut(s)	337
VneI	GTGCAC	1 cut(s)	5
XcmI	CCANNNNNNNNNTGG	1 cut(s)	499
XspI	CTAG	3 cut(s)	521, 716, 779
ZraI	GACGTC	1 cut(s)	310
ZrmI	AGTACT	1 cut(s)	882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.