Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015098

Physical Location & Seq

Genomic Coordinates Reverse (-)

20860720 .. 20862395

Gene Structure 1676 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G56230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGATTGCTCAATCTGCACCACAATGCCATCTATATTAAGACCACCAAGAAACACAATATGTGGATCATGCTACGAAGGGGCTAGAACAACAATTGCGCTGCTCAAGAAACTTGAGGGCTCGAAAGAAGATCGTCATGACAAATCGAACCATAATTCCACCATCAATAATGGCTCCTCTATTTCTTCGTCTCCTTTGTTTTCTTGTGAGCCGCAACCATTAGAGAAGGTGATCAAATGGATGAAAAACATGAAAGAAACCGAAGAAGAACAGAAGAAAAGAATAGTCTTCTTAAGCAGCTTTGTGTCGGGTTTCAAAGAACAGCTTCATGCTGATATTCTTCTAAAACCGGGCGATGATGGCCCTCCAATTCCTGCACATAGAGCTTTGCTGGCTTCAAAATCTGAGATCTTTAAGAACATTCTAGACTCAGATGGATGCAAAACCGCTCCAGAATACGCCATAACGCTCCAAGAACTAAATTCCGAGCAACTTCAAGCTCTCTTGGAGTTTCTATACACCGGTACATTGGCTTCAGATAAGTTGGAGAAAAATGTCTACGCGTTGTTTATTGCAGCAGATAAGTACATGATTCATTACTTGCAAGAGTTGTGCGAGCAATATATGTTAAGTTCCTTGGACATCTCTAGTGTTCTTAACGTTCTTGATGTCTCGGATCTTGGTTCGAGCAAGACGCTGAAGGAGGCTTGTGTAGGGTTCGTGGTGCGGAACATGGACGACGTCGTTTTCTCGGATAAGTACGAACCTTTCTCTCAGAAAAACCAACATCTATGTGTGGAGATCACAAGGGCGTTCTTGATGGAAACGAGAAGCAAGAGACGTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB

Protein Analysis

282

Amino Acids

31.76

Weight (kDa)

5.77

Isoelectric Point (pI)

55.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	106 - 212	2.2e-19	BTB/POZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56230
fragaria_vesca	FvH4_7g25521
malus_domestica	MD01G1161900.v1.1 MD07G1230000.v1.1
prunus_persica	Prupe.2G260000_v2.0.a1
pyrus_communis	pycom01g17740
rosa_chinensis	RchiOBHm_Chr1g0371521
rosa_laevigata	RLG00000026954
rosa_multiflora	Rmu_sc0000809.1_g000016
rosa_roxburghii	Rroxscaffold_4G00285590
rosa_rugosa	Rorug01G0365000
rosa_samantha	Rh1AG374900 Rh1BG338400 Rh1CG351700 Rh1DG369400
rosa_wichuraiana	Rw1G032980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	744
AccBSI	CCGCTC	1 cut(s)	449
AccI	GTMKAC	1 cut(s)	558
AccII	CGCG	1 cut(s)	563
AciI	CCGC	3 cut(s)	212, 447, 727
AclI	AACGTT	1 cut(s)	660
AclWI	GGATC	2 cut(s)	73, 684
AcsI	RAATTY	1 cut(s)	481
AcuI	CTGAAG	2 cut(s)	519, 719
AcyI	GRCGYC	1 cut(s)	741
AfaI	GTAC	3 cut(s)	526, 587, 761
AflII	CTTAAG	1 cut(s)	292
AflIII	ACRYGT	1 cut(s)	561
AgeI	ACCGGT	1 cut(s)	521
AgsI	TTSAA	3 cut(s)	316, 399, 497
AjiI	CACGTC	1 cut(s)	842
AloI	GAACNNNNNNTCC	2 cut(s)	140, 172
AluBI	AGCT	4 cut(s)	300, 325, 386, 500
AluI	AGCT	4 cut(s)	300, 325, 386, 500
Alw26I	GTCTC	3 cut(s)	195, 676, 832
AlwI	GGATC	2 cut(s)	73, 684
AoxI	GGCC	1 cut(s)	361
ApeKI	GCWGC	3 cut(s)	100, 297, 575
ApoI	RAATTY	1 cut(s)	481
AsiGI	ACCGGT	1 cut(s)	521
Asp700I	GAANNNNTTC	1 cut(s)	324
AspLEI	GCGC	1 cut(s)	100
AspS9I	GGNCC	1 cut(s)	362
AsuC2I	CCSGG	1 cut(s)	351
AsuHPI	GGTGA	1 cut(s)	241
BanII	GRGCYC	1 cut(s)	122
BarI	GAAGNNNNNNTAC	2 cut(s)	517, 549
BbsI	GAAGAC	1 cut(s)	280
BbvI	GCAGC	3 cut(s)	87, 309, 587
BccI	CCATC	5 cut(s)	37, 170, 353, 428, 814
BclI	TGATCA	1 cut(s)	231
BcnI	CCSGG	1 cut(s)	351
BcoDI	GTCTC	3 cut(s)	195, 676, 832
BfaI	CTAG	3 cut(s)	84, 425, 648
BfrI	CTTAAG	1 cut(s)	292
BglII	AGATCT	1 cut(s)	408
BisI	GCNGC	4 cut(s)	101, 212, 298, 576
BlsI	GCNGC	4 cut(s)	102, 213, 299, 577
Bme1390I	CCNGG	1 cut(s)	351
BmgBI	CACGTC	1 cut(s)	842
BmgT120I	GGNCC	1 cut(s)	362
BmiI	GGNNCC	1 cut(s)	175
BmrFI	CCNGG	1 cut(s)	351
BmsI	GCATC	1 cut(s)	428
BpiI	GAAGAC	1 cut(s)	280
BpmI	CTGGAG	1 cut(s)	435
BpuEI	CTTGAG	2 cut(s)	89, 134
BpuMI	CCSGG	1 cut(s)	351
BsaHI	GRCGYC	1 cut(s)	741
BsaJI	CCNNGG	1 cut(s)	636
BsaWI	WCCGGW	1 cut(s)	521
Bse118I	RCCGGY	1 cut(s)	521
BseDI	CCNNGG	1 cut(s)	636
BseGI	GGATG	2 cut(s)	246, 443
BseMII	CTCAG	3 cut(s)	396, 444, 788
BseRI	GAGGAG	1 cut(s)	166
BseXI	GCAGC	3 cut(s)	87, 309, 587
BsgI	GTGCAG	1 cut(s)	360
Bsh1236I	CGCG	1 cut(s)	563
BshFI	GGCC	1 cut(s)	363
BshTI	ACCGGT	1 cut(s)	521
BsiSI	CCGG	2 cut(s)	350, 522
BsmAI	GTCTC	3 cut(s)	195, 676, 832
BsmBI	CGTCTC	2 cut(s)	195, 832
BsnI	GGCC	1 cut(s)	363
Bsp1286I	GDGCHC	1 cut(s)	122
Bsp143I	GATC	6 cut(s)	65, 130, 231, 408, 676, 801
BspACI	CCGC	3 cut(s)	212, 447, 727
BspANI	GGCC	1 cut(s)	363
BspCNI	CTCAG	3 cut(s)	397, 443, 787
BspFNI	CGCG	1 cut(s)	563
BspHI	TCATGA	1 cut(s)	136
BspLI	GGNNCC	1 cut(s)	175
BspPI	GGATC	2 cut(s)	73, 684
BspTI	CTTAAG	1 cut(s)	292
BsrBI	CCGCTC	1 cut(s)	449
BsrFI	RCCGGY	1 cut(s)	521
BssAI	RCCGGY	1 cut(s)	521
BssECI	CCNNGG	1 cut(s)	636
BssMI	GATC	6 cut(s)	65, 130, 231, 408, 676, 801
BssNI	GRCGYC	1 cut(s)	741
BssT1I	CCWWGG	1 cut(s)	636
BstACI	GRCGYC	1 cut(s)	741
BstAFI	CTTAAG	1 cut(s)	292
BstC8I	GCNNGC	2 cut(s)	393, 617
BstDEI	CTNAG	3 cut(s)	405, 430, 774
BstF5I	GGATG	2 cut(s)	246, 443
BstFNI	CGCG	1 cut(s)	563
BstHHI	GCGC	1 cut(s)	100
BstKTI	GATC	6 cut(s)	68, 133, 234, 411, 679, 804
BstMAI	GTCTC	3 cut(s)	195, 676, 832
BstMBI	GATC	6 cut(s)	65, 130, 231, 408, 676, 801
BstMWI	GCNNNNNNNGC	4 cut(s)	15, 360, 383, 392
BstSCI	CCNGG	1 cut(s)	349
BstUI	CGCG	1 cut(s)	563
BstV1I	GCAGC	3 cut(s)	87, 309, 587
BstV2I	GAAGAC	1 cut(s)	280
BstX2I	RGATCY	2 cut(s)	408, 676
BstYI	RGATCY	2 cut(s)	408, 676
BsuRI	GGCC	1 cut(s)	363
BtgZI	GCGATG	1 cut(s)	369
BtrI	CACGTC	1 cut(s)	842
BtsCI	GGATG	2 cut(s)	246, 443
Cac8I	GCNNGC	2 cut(s)	393, 617
CciI	TCATGA	1 cut(s)	136
CfoI	GCGC	1 cut(s)	100
Cfr10I	RCCGGY	1 cut(s)	521
Cfr13I	GGNCC	1 cut(s)	362
CseI	GACGC	1 cut(s)	703
Csp6I	GTAC	3 cut(s)	525, 586, 760
CspAI	ACCGGT	1 cut(s)	521
CviAII	CATG	6 cut(s)	69, 137, 250, 329, 589, 733
CviQI	GTAC	3 cut(s)	525, 586, 760
DdeI	CTNAG	3 cut(s)	405, 430, 774
DpnI	GATC	6 cut(s)	67, 132, 233, 410, 678, 803
DpnII	GATC	6 cut(s)	65, 130, 231, 408, 676, 801
Eco130I	CCWWGG	1 cut(s)	636
Eco24I	GRGCYC	1 cut(s)	122
Eco57I	CTGAAG	2 cut(s)	519, 719
EcoT14I	CCWWGG	1 cut(s)	636
EcoT38I	GRGCYC	1 cut(s)	122
ErhI	CCWWGG	1 cut(s)	636
Esp3I	CGTCTC	2 cut(s)	195, 832
FaeI	CATG	6 cut(s)	72, 140, 253, 332, 592, 736
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FatI	CATG	6 cut(s)	68, 136, 249, 328, 588, 732
FbaI	TGATCA	1 cut(s)	231
FblI	GTMKAC	1 cut(s)	558
Fnu4HI	GCNGC	4 cut(s)	101, 212, 298, 576
FokI	GGATG	2 cut(s)	253, 450
FriOI	GRGCYC	1 cut(s)	122
Fsp4HI	GCNGC	4 cut(s)	101, 212, 298, 576
FspBI	CTAG	3 cut(s)	84, 425, 648
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	4 cut(s)	101, 212, 298, 576
GsuI	CTGGAG	1 cut(s)	435
HaeIII	GGCC	1 cut(s)	363
HapII	CCGG	2 cut(s)	350, 522
HgaI	GACGC	1 cut(s)	703
HhaI	GCGC	1 cut(s)	100
Hin1I	GRCGYC	1 cut(s)	741
Hin1II	CATG	6 cut(s)	72, 140, 253, 332, 592, 736
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HinfI	GANTC	2 cut(s)	428, 592
HpaII	CCGG	2 cut(s)	350, 522
HphI	GGTGA	1 cut(s)	241
Hpy166II	GTNNAC	1 cut(s)	559
Hpy188I	TCNGA	7 cut(s)	406, 433, 487, 538, 676, 754, 777
Hpy188III	TCNNGA	6 cut(s)	106, 137, 425, 452, 665, 817
Hpy8I	GTNNAC	1 cut(s)	559
Hpy99I	CGWCG	2 cut(s)	743, 746
HpyAV	CCTTC	3 cut(s)	71, 220, 694
HpyCH4IV	ACGT	3 cut(s)	660, 741, 841
HpyCH4V	TGCA	5 cut(s)	18, 377, 441, 575, 604
HpyF10VI	GCNNNNNNNGC	4 cut(s)	15, 360, 383, 392
HpyF3I	CTNAG	3 cut(s)	405, 430, 774
HpySE526I	ACGT	3 cut(s)	660, 741, 841
Hsp92I	GRCGYC	1 cut(s)	741
Hsp92II	CATG	6 cut(s)	72, 140, 253, 332, 592, 736
HspAI	GCGC	1 cut(s)	98
Ksp22I	TGATCA	1 cut(s)	231
Kzo9I	GATC	6 cut(s)	65, 130, 231, 408, 676, 801
LmnI	GCTCC	3 cut(s)	179, 454, 474
LpnPI	CCDG	5 cut(s)	363, 377, 387, 465, 535
Lsp1109I	GCAGC	3 cut(s)	87, 309, 587
LweI	GCATC	1 cut(s)	428
MaeI	CTAG	3 cut(s)	84, 425, 648
MaeII	ACGT	3 cut(s)	660, 741, 841
MaeIII	GTNAC	1 cut(s)	842
MalI	GATC	6 cut(s)	67, 132, 233, 410, 678, 803
MbiI	CCGCTC	1 cut(s)	449
MboI	GATC	6 cut(s)	65, 130, 231, 408, 676, 801
MboII	GAAGA	7 cut(s)	140, 177, 275, 278, 280, 286, 332
MfeI	CAATTG	1 cut(s)	93
MflI	RGATCY	2 cut(s)	408, 676
MhlI	GDGCHC	1 cut(s)	122
MluCI	AATT	4 cut(s)	93, 154, 369, 481
MluI	ACGCGT	1 cut(s)	561
MlyI	GAGTC	1 cut(s)	422
MmeI	TCCRAC	1 cut(s)	525
MnlI	CCTC	4 cut(s)	109, 187, 375, 697
MroXI	GAANNNNTTC	1 cut(s)	324
MseI	TTAA	5 cut(s)	38, 293, 414, 629, 657
MslI	CAYNNNNRTG	2 cut(s)	23, 792
MspCI	CTTAAG	1 cut(s)	292
MspI	CCGG	2 cut(s)	350, 522
MspR9I	CCNGG	1 cut(s)	351
MunI	CAATTG	1 cut(s)	93
MvnI	CGCG	1 cut(s)	563
MwoI	GCNNNNNNNGC	4 cut(s)	15, 360, 383, 392
NciI	CCSGG	1 cut(s)	351
NdeII	GATC	6 cut(s)	65, 130, 231, 408, 676, 801
NlaIII	CATG	6 cut(s)	72, 140, 253, 332, 592, 736
NlaIV	GGNNCC	1 cut(s)	175
NmuCI	GTSAC	1 cut(s)	842
PagI	TCATGA	1 cut(s)	136
PdmI	GAANNNNTTC	1 cut(s)	324
PfeI	GAWTC	1 cut(s)	592
PflFI	GACNNNGTC	1 cut(s)	740
PinAI	ACCGGT	1 cut(s)	521
PkrI	GCNGC	4 cut(s)	102, 213, 299, 577
PleI	GAGTC	1 cut(s)	422
PpsI	GAGTC	1 cut(s)	422
Psp1406I	AACGTT	1 cut(s)	660
PspN4I	GGNNCC	1 cut(s)	175
PspPI	GGNCC	1 cut(s)	362
PsuI	RGATCY	2 cut(s)	408, 676
PsyI	GACNNNGTC	1 cut(s)	740
RsaI	GTAC	3 cut(s)	526, 587, 761
RsaNI	GTAC	3 cut(s)	525, 586, 760
RseI	CAYNNNNRTG	2 cut(s)	23, 792
SaqAI	TTAA	5 cut(s)	38, 293, 414, 629, 657
SatI	GCNGC	4 cut(s)	101, 212, 298, 576
Sau3AI	GATC	6 cut(s)	65, 130, 231, 408, 676, 801
Sau96I	GGNCC	1 cut(s)	362
SchI	GAGTC	1 cut(s)	422
ScrFI	CCNGG	1 cut(s)	351
SduI	GDGCHC	1 cut(s)	122
SetI	ASST	9 cut(s)	231, 302, 327, 388, 502, 663, 744, 769, 844
SfaNI	GCATC	1 cut(s)	428
SmiMI	CAYNNNNRTG	2 cut(s)	23, 792
SmlI	CTYRAG	3 cut(s)	104, 113, 292
SmoI	CTYRAG	3 cut(s)	104, 113, 292
Sse9I	AATT	4 cut(s)	93, 154, 369, 481
SsiI	CCGC	3 cut(s)	212, 447, 727
SspMI	CTAG	3 cut(s)	84, 425, 648
StyD4I	CCNGG	1 cut(s)	349
StyI	CCWWGG	1 cut(s)	636
TaiI	ACGT	3 cut(s)	663, 744, 844
TaqI	TCGA	3 cut(s)	122, 146, 686
TasI	AATT	4 cut(s)	93, 154, 369, 481
TatI	WGTACW	1 cut(s)	585
TauI	GCSGC	1 cut(s)	214
TfiI	GAWTC	1 cut(s)	592
Tru1I	TTAA	5 cut(s)	38, 293, 414, 629, 657
Tru9I	TTAA	5 cut(s)	38, 293, 414, 629, 657
TseFI	GTSAC	1 cut(s)	842
TseI	GCWGC	3 cut(s)	100, 297, 575
Tsp45I	GTSAC	1 cut(s)	842
TspDTI	ATGAA	4 cut(s)	257, 266, 317, 584
Tth111I	GACNNNGTC	1 cut(s)	740
Vha464I	CTTAAG	1 cut(s)	292
XapI	RAATTY	1 cut(s)	481
XbaI	TCTAGA	1 cut(s)	424
XmiI	GTMKAC	1 cut(s)	558
XmnI	GAANNNNTTC	1 cut(s)	324
XspI	CTAG	3 cut(s)	84, 425, 648
ZraI	GACGTC	1 cut(s)	742

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.