Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0015098

Physical Location & Seq

Genomic Coordinates Reverse (-)

26707306 .. 26709050

Gene Structure 1745 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1161900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGACTGCACCATTTGTACTTCTATGCCAGTTATGCTAAGGCCTCCGAGGAATATAATTTGCTCAACATGCTATGAGGGGGCTAGGAGCGTTATCTTCTTCATAAATAAACAGCTTCAAACTGCTCAAGGACCAGCTGATCAAAAACCAAATTTGTGTAAGGCAAGCTATCTGACTCTTGAAAATGTGTCGAAATGGGTGCGTGACATGAAAGCAGAATCAGAAGAACTCGGTGAGAAGATTAGATTTCTAAGTGGATTTTCTGTTGCATTTAGAGATCAAATTCACACTGACATATTATTGCAACCTGGTGAAAGCGGCCCTCCAATTCCTGCCCATAAAGCCTTACTGGCAATAAGATCAGAAGTATTTAACAACATTCTAGACTCAGATGGGTGCAAAGCTCCAGCAACCGACACCGTAAAACTGCCTGAGCTGAACCATGAAGAGCTGGAGTCTCTATTGGAATTTCTGTACAACGGAGACTTGCCTGAAGATAAGATGAACAAACACATCTACTCCTTGTCCCTTGCAGCTGATAAGTACGGAATCTCGTACTTGCAGAAGCTATGTGAGTGTCATATGCTCAAGTCTATGAGCCCAGCCAATGCTCTTGATGTCTTAGAGGTTGCGGATGTTTGTTCCAGCCTAAAACTGAAGGAGAATGCGTTGGACTACATCGTTAAAAACATGCATGATATAGTTTTTTCTGCAAAATATGATAGTTTTGCACTTAAGAATCCGCATCTATGTGTACAGATTTCAAGGGCATCATTAATGGACGCCAAAAGAAAATCAGTTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB

Protein Analysis

269

Amino Acids

29.93

Weight (kDa)

6.0

Isoelectric Point (pI)

53.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	92 - 197	6.5e-17	BTB/POZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56230
fragaria_vesca	FvH4_7g25521
malus_domestica	MD01G1161900.v1.1 MD07G1230000.v1.1
prunus_persica	Prupe.2G260000_v2.0.a1
pyrus_communis	pycom01g17740
rosa_chinensis	RchiOBHm_Chr1g0371521
rosa_laevigata	RLG00000026954
rosa_multiflora	Rmu_sc0000809.1_g000016
rosa_roxburghii	Rroxscaffold_4G00285590
rosa_rugosa	Rorug01G0365000
rosa_samantha	Rh1AG374900 Rh1BG338400 Rh1CG351700 Rh1DG369400
rosa_wichuraiana	Rw1G032980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	318, 632, 743
AcsI	RAATTY	3 cut(s)	151, 282, 467
AcuI	CTGAAG	2 cut(s)	513, 677
AcyI	GRCGYC	1 cut(s)	783
AfaI	GTAC	5 cut(s)	19, 476, 545, 557, 756
AflII	CTTAAG	1 cut(s)	734
AgsI	TTSAA	3 cut(s)	119, 182, 765
AjnI	CCWGG	1 cut(s)	307
AluBI	AGCT	8 cut(s)	115, 137, 168, 404, 436, 451, 536, 568
AluI	AGCT	8 cut(s)	115, 137, 168, 404, 436, 451, 536, 568
Alw26I	GTCTC	2 cut(s)	462, 477
AoxI	GGCC	2 cut(s)	41, 319
ApeKI	GCWGC	1 cut(s)	533
ApoI	RAATTY	3 cut(s)	151, 282, 467
AseI	ATTAAT	1 cut(s)	776
AspS9I	GGNCC	2 cut(s)	131, 320
AsuHPI	GGTGA	2 cut(s)	245, 323
AvaII	GGWCC	1 cut(s)	131
BanII	GRGCYC	1 cut(s)	602
BbvI	GCAGC	1 cut(s)	545
BccI	CCATC	1 cut(s)	386
BcgI	CGANNNNNNTGC	2 cut(s)	181, 215
BciT130I	CCWGG	1 cut(s)	309
BclI	TGATCA	1 cut(s)	139
BcoDI	GTCTC	2 cut(s)	462, 477
BfaI	CTAG	2 cut(s)	84, 383
BfrI	CTTAAG	1 cut(s)	734
BglI	GCCNNNNNGGC	1 cut(s)	350
BisI	GCNGC	2 cut(s)	319, 534
BlsI	GCNGC	2 cut(s)	320, 535
Bme1390I	CCNGG	1 cut(s)	309
Bme18I	GGWCC	1 cut(s)	131
BmgT120I	GGNCC	2 cut(s)	131, 320
BmrFI	CCNGG	1 cut(s)	309
BmsI	GCATC	2 cut(s)	754, 779
BpmI	CTGGAG	2 cut(s)	390, 473
Bpu10I	CCTNAGC	2 cut(s)	38, 432
BpuEI	CTTGAG	2 cut(s)	111, 572
BsaHI	GRCGYC	1 cut(s)	783
BsaJI	CCNNGG	1 cut(s)	47
BsaXI	ACNNNNNCTCC	4 cut(s)	503, 533, 653, 683
Bse1I	ACTGG	2 cut(s)	29, 354
BseBI	CCWGG	1 cut(s)	309
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	1 cut(s)	640
BseMII	CTCAG	2 cut(s)	402, 423
BseNI	ACTGG	2 cut(s)	29, 354
BseXI	GCAGC	1 cut(s)	545
BseYI	CCCAGC	1 cut(s)	601
BshFI	GGCC	2 cut(s)	43, 321
BslFI	GGGAC	1 cut(s)	511
BsmAI	GTCTC	2 cut(s)	462, 477
BsmFI	GGGAC	1 cut(s)	511
BsmI	GAATGC	1 cut(s)	670
BsnI	GGCC	2 cut(s)	43, 321
Bsp1286I	GDGCHC	1 cut(s)	602
Bsp1407I	TGTACA	2 cut(s)	474, 754
Bsp143I	GATC	3 cut(s)	139, 277, 359
BspACI	CCGC	3 cut(s)	318, 632, 743
BspANI	GGCC	2 cut(s)	43, 321
BspCNI	CTCAG	2 cut(s)	401, 424
BspQI	GCTCTTC	1 cut(s)	441
BspTI	CTTAAG	1 cut(s)	734
BsrGI	TGTACA	2 cut(s)	474, 754
BsrI	ACTGG	2 cut(s)	29, 354
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	3 cut(s)	139, 277, 359
BssNI	GRCGYC	1 cut(s)	783
Bst2UI	CCWGG	1 cut(s)	309
Bst4CI	ACNGT	1 cut(s)	421
Bst6I	CTCTTC	1 cut(s)	441
BstACI	GRCGYC	1 cut(s)	783
BstAFI	CTTAAG	1 cut(s)	734
BstAUI	TGTACA	2 cut(s)	474, 754
BstC8I	GCNNGC	1 cut(s)	166
BstDEI	CTNAG	5 cut(s)	38, 251, 388, 432, 622
BstF5I	GGATG	1 cut(s)	640
BstKTI	GATC	3 cut(s)	142, 280, 362
BstMAI	GTCTC	2 cut(s)	462, 477
BstMBI	GATC	3 cut(s)	139, 277, 359
BstMWI	GCNNNNNNNGC	4 cut(s)	34, 69, 341, 350
BstNI	CCWGG	1 cut(s)	309
BstNSI	RCATGY	2 cut(s)	72, 694
BstSCI	CCNGG	1 cut(s)	307
BstV1I	GCAGC	1 cut(s)	545
BsuRI	GGCC	2 cut(s)	43, 321
BtsCI	GGATG	1 cut(s)	640
BtsIMutI	CAGTG	1 cut(s)	288
Cac8I	GCNNGC	1 cut(s)	166
Cfr13I	GGNCC	2 cut(s)	131, 320
CseI	GACGC	1 cut(s)	791
CsiI	ACCWGGT	1 cut(s)	307
Csp6I	GTAC	5 cut(s)	18, 475, 544, 556, 755
CviAII	CATG	5 cut(s)	69, 208, 443, 691, 695
CviQI	GTAC	5 cut(s)	18, 475, 544, 556, 755
DdeI	CTNAG	5 cut(s)	38, 251, 388, 432, 622
DpnI	GATC	3 cut(s)	141, 279, 361
DpnII	GATC	3 cut(s)	139, 277, 359
Eam1104I	CTCTTC	1 cut(s)	441
EarI	CTCTTC	1 cut(s)	441
Eco147I	AGGCCT	1 cut(s)	43
Eco24I	GRGCYC	1 cut(s)	602
Eco47I	GGWCC	1 cut(s)	131
Eco57I	CTGAAG	2 cut(s)	513, 677
EcoRII	CCWGG	1 cut(s)	307
EcoT22I	ATGCAT	1 cut(s)	696
EcoT38I	GRGCYC	1 cut(s)	602
FaeI	CATG	5 cut(s)	72, 211, 446, 694, 698
FaqI	GGGAC	1 cut(s)	511
FatI	CATG	5 cut(s)	68, 207, 442, 690, 694
FauNDI	CATATG	1 cut(s)	582
FbaI	TGATCA	1 cut(s)	139
Fnu4HI	GCNGC	2 cut(s)	319, 534
FokI	GGATG	1 cut(s)	647
FriOI	GRGCYC	1 cut(s)	602
Fsp4HI	GCNGC	2 cut(s)	319, 534
FspBI	CTAG	2 cut(s)	84, 383
GluI	GCNGC	2 cut(s)	319, 534
GsaI	CCCAGC	1 cut(s)	605
GsuI	CTGGAG	2 cut(s)	390, 473
HaeIII	GGCC	2 cut(s)	43, 321
HgaI	GACGC	1 cut(s)	791
Hin1I	GRCGYC	1 cut(s)	783
Hin1II	CATG	5 cut(s)	72, 211, 446, 694, 698
HinfI	GANTC	6 cut(s)	175, 218, 386, 455, 549, 739
HphI	GGTGA	2 cut(s)	245, 323
Hpy166II	GTNNAC	1 cut(s)	755
Hpy188I	TCNGA	5 cut(s)	48, 174, 223, 364, 391
Hpy188III	TCNNGA	3 cut(s)	179, 383, 614
Hpy8I	GTNNAC	1 cut(s)	755
HpyAV	CCTTC	1 cut(s)	652
HpyCH4III	ACNGT	1 cut(s)	421
HpyCH4V	TGCA	9 cut(s)	9, 269, 304, 399, 533, 562, 694, 713, 731
HpyF10VI	GCNNNNNNNGC	4 cut(s)	34, 69, 341, 350
HpyF3I	CTNAG	5 cut(s)	38, 251, 388, 432, 622
Hsp92I	GRCGYC	1 cut(s)	783
Hsp92II	CATG	5 cut(s)	72, 211, 446, 694, 698
Ksp22I	TGATCA	1 cut(s)	139
Kzo9I	GATC	3 cut(s)	139, 277, 359
LguI	GCTCTTC	1 cut(s)	441
LmnI	GCTCC	2 cut(s)	87, 409
Lsp1109I	GCAGC	1 cut(s)	545
LweI	GCATC	2 cut(s)	754, 779
MabI	ACCWGGT	1 cut(s)	307
MaeI	CTAG	2 cut(s)	84, 383
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	3 cut(s)	141, 279, 361
MboI	GATC	3 cut(s)	139, 277, 359
MboII	GAAGA	6 cut(s)	88, 91, 236, 250, 458, 506
MhlI	GDGCHC	1 cut(s)	602
MluCI	AATT	5 cut(s)	57, 151, 282, 327, 467
MlyI	GAGTC	3 cut(s)	169, 380, 464
MmeI	TCCRAC	1 cut(s)	651
MnlI	CCTC	5 cut(s)	42, 54, 70, 333, 619
Mph1103I	ATGCAT	1 cut(s)	696
MseI	TTAA	4 cut(s)	372, 684, 735, 776
MslI	CAYNNNNRTG	1 cut(s)	750
MspA1I	CMGCKG	2 cut(s)	137, 536
MspCI	CTTAAG	1 cut(s)	734
MspR9I	CCNGG	1 cut(s)	309
Mva1269I	GAATGC	1 cut(s)	670
MvaI	CCWGG	1 cut(s)	309
MwoI	GCNNNNNNNGC	4 cut(s)	34, 69, 341, 350
NdeI	CATATG	1 cut(s)	582
NdeII	GATC	3 cut(s)	139, 277, 359
NlaIII	CATG	5 cut(s)	72, 211, 446, 694, 698
NmuCI	GTSAC	1 cut(s)	203
NsiI	ATGCAT	1 cut(s)	696
NspI	RCATGY	2 cut(s)	72, 694
PceI	AGGCCT	1 cut(s)	43
PciSI	GCTCTTC	1 cut(s)	441
PctI	GAATGC	1 cut(s)	670
PfeI	GAWTC	3 cut(s)	218, 549, 739
PkrI	GCNGC	2 cut(s)	320, 535
PleI	GAGTC	3 cut(s)	169, 380, 463
PpsI	GAGTC	3 cut(s)	169, 380, 463
PshBI	ATTAAT	1 cut(s)	776
Psp6I	CCWGG	1 cut(s)	307
PspFI	CCCAGC	1 cut(s)	601
PspGI	CCWGG	1 cut(s)	307
PspPI	GGNCC	2 cut(s)	131, 320
PvuII	CAGCTG	2 cut(s)	137, 536
RsaI	GTAC	5 cut(s)	19, 476, 545, 557, 756
RsaNI	GTAC	5 cut(s)	18, 475, 544, 556, 755
RseI	CAYNNNNRTG	1 cut(s)	750
SapI	GCTCTTC	1 cut(s)	441
SaqAI	TTAA	4 cut(s)	372, 684, 735, 776
SatI	GCNGC	2 cut(s)	319, 534
Sau3AI	GATC	3 cut(s)	139, 277, 359
Sau96I	GGNCC	2 cut(s)	131, 320
SchI	GAGTC	3 cut(s)	169, 380, 464
ScrFI	CCNGG	1 cut(s)	309
SduI	GDGCHC	1 cut(s)	602
SexAI	ACCWGGT	1 cut(s)	307
SfaNI	GCATC	2 cut(s)	754, 779
SinI	GGWCC	1 cut(s)	131
SmiMI	CAYNNNNRTG	1 cut(s)	750
SmlI	CTYRAG	3 cut(s)	126, 587, 734
SmoI	CTYRAG	3 cut(s)	126, 587, 734
Sse9I	AATT	5 cut(s)	57, 151, 282, 327, 467
SseBI	AGGCCT	1 cut(s)	43
SsiI	CCGC	3 cut(s)	318, 632, 743
SspMI	CTAG	2 cut(s)	84, 383
StuI	AGGCCT	1 cut(s)	43
StyD4I	CCNGG	1 cut(s)	307
TaaI	ACNGT	1 cut(s)	421
TaqI	TCGA	1 cut(s)	191
TasI	AATT	5 cut(s)	57, 151, 282, 327, 467
TatI	WGTACW	3 cut(s)	17, 474, 754
TauI	GCSGC	1 cut(s)	321
TfiI	GAWTC	3 cut(s)	218, 549, 739
Tru1I	TTAA	4 cut(s)	372, 684, 735, 776
Tru9I	TTAA	4 cut(s)	372, 684, 735, 776
TscAI	CASTG	1 cut(s)	295
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	1 cut(s)	533
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	4 cut(s)	91, 224, 459, 518
TspGWI	ACGGA	2 cut(s)	495, 561
TspRI	CASTG	1 cut(s)	295
Vha464I	CTTAAG	1 cut(s)	734
VpaK11BI	GGWCC	1 cut(s)	131
VspI	ATTAAT	1 cut(s)	776
XapI	RAATTY	3 cut(s)	151, 282, 467
XbaI	TCTAGA	1 cut(s)	382
XceI	RCATGY	2 cut(s)	72, 694
XspI	CTAG	2 cut(s)	84, 383
Zsp2I	ATGCAT	1 cut(s)	696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.