Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000809.1

Orthogroup ID

OG0015098

Physical Location & Seq

Genomic Coordinates Forward (+)

68675 .. 70005

Gene Structure 1331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000809.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

atggactgctcagtttgtacttcaatgccggctcaattaaggcctccaagaaatacgatatgcggggcatgttatgagggagctagaagcctcatctccttcataaacaagctcgaagctgctcaaggaattgataaagcaaatttgtgtaagaatttgatgaatgtgtcaacatgggtggttgatatgaaagaatcatcagaagaactggatgagaaaattaaattcgtaagcgggtttgttgttgcatttagagatcaaattcacaccgacatacaacttcgttctggtgaaaacagaccttcaatacctgcacatagagcgttattggcaattagatcggaaatctttagcaacatgctcgactcagacggatgcaaagcccctcctagtgatgacaccataacattgcccgagttgaatcatgaagagctcgaatgtttcttggaactcctctatagtggtgacttggctgaagaaaggatgagcaaacatgtctattcattatcccttgcagctgataagtacggagtatcattcttacaaaagctctgtgaacgccatatgctcaagtctttgagttcgtccaatgctctcgatgttttagaggtcgcagacacttgttcttttctactgttgaaggagaatgccttgaactacattgtcaaaaacatgaatgagatcgtattttctgctaagtatgatacatttgcacttaagaatccgcatttaagcgtgcaaattacaagggcatcattgatggatgctagaagaaattgcgtgggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB

Protein Analysis

262

Amino Acids

29.25

Weight (kDa)

5.44

Isoelectric Point (pI)

38.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56230
fragaria_vesca	FvH4_7g25521
malus_domestica	MD01G1161900.v1.1 MD07G1230000.v1.1
prunus_persica	Prupe.2G260000_v2.0.a1
pyrus_communis	pycom01g17740
rosa_chinensis	RchiOBHm_Chr1g0371521
rosa_laevigata	RLG00000026954
rosa_multiflora	Rmu_sc0000809.1_g000016
rosa_roxburghii	Rroxscaffold_4G00285590
rosa_rugosa	Rorug01G0365000
rosa_samantha	Rh1AG374900 Rh1BG338400 Rh1CG351700 Rh1DG369400
rosa_wichuraiana	Rw1G032980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	319
AciI	CCGC	3 cut(s)	63, 234, 725
AcsI	RAATTY	4 cut(s)	142, 154, 224, 261
AcuI	CTGAAG	1 cut(s)	495
AfaI	GTAC	2 cut(s)	19, 527
AflII	CTTAAG	1 cut(s)	716
AflIII	ACRYGT	1 cut(s)	493
AgsI	TTSAA	5 cut(s)	24, 306, 421, 640, 655
AluBI	AGCT	6 cut(s)	83, 112, 119, 433, 518, 550
AluI	AGCT	6 cut(s)	83, 112, 119, 433, 518, 550
Alw21I	GWGCWC	1 cut(s)	435
Ama87I	CYCGRG	1 cut(s)	413
AoxI	GGCC	1 cut(s)	41
ApeKI	GCWGC	2 cut(s)	119, 515
ApoI	RAATTY	4 cut(s)	142, 154, 224, 261
AsuHPI	GGTGA	2 cut(s)	302, 476
AvaI	CYCGRG	1 cut(s)	413
BanII	GRGCYC	1 cut(s)	435
Bbv12I	GWGCWC	1 cut(s)	435
BbvI	GCAGC	2 cut(s)	106, 527
BccI	CCATC	1 cut(s)	754
BcgI	CGANNNNNNTGC	4 cut(s)	321, 343, 355, 377
BfaI	CTAG	3 cut(s)	84, 390, 768
BfmI	CTRYAG	1 cut(s)	457
BfrI	CTTAAG	1 cut(s)	716
BfuAI	ACCTGC	1 cut(s)	319
BisI	GCNGC	2 cut(s)	120, 516
BlsI	GCNGC	2 cut(s)	121, 517
BmeT110I	CYCGRG	1 cut(s)	413
BmsI	GCATC	3 cut(s)	365, 754, 761
BpuEI	CTTGAG	2 cut(s)	108, 554
Bse118I	RCCGGY	1 cut(s)	28
Bse1I	ACTGG	1 cut(s)	213
Bse3DI	GCAATG	1 cut(s)	407
BseGI	GGATG	4 cut(s)	217, 380, 489, 769
BseMI	GCAATG	1 cut(s)	407
BseMII	CTCAG	2 cut(s)	24, 381
BseNI	ACTGG	1 cut(s)	213
BseRI	GAGGAG	1 cut(s)	443
BseXI	GCAGC	2 cut(s)	106, 527
BsgI	GTGCAG	1 cut(s)	297
BshFI	GGCC	1 cut(s)	43
BsiHKAI	GWGCWC	1 cut(s)	435
BsiHKCI	CYCGRG	1 cut(s)	413
BsiSI	CCGG	1 cut(s)	29
BsmI	GAATGC	1 cut(s)	652
BsnI	GGCC	1 cut(s)	43
BsoBI	CYCGRG	1 cut(s)	413
Bsp1286I	GDGCHC	1 cut(s)	435
Bsp143I	GATC	3 cut(s)	256, 338, 681
BspACI	CCGC	3 cut(s)	63, 234, 725
BspANI	GGCC	1 cut(s)	43
BspCNI	CTCAG	2 cut(s)	23, 380
BspHI	TCATGA	1 cut(s)	424
BspMI	ACCTGC	1 cut(s)	319
BspQI	GCTCTTC	1 cut(s)	423
BspTI	CTTAAG	1 cut(s)	716
BsrDI	GCAATG	1 cut(s)	407
BsrFI	RCCGGY	1 cut(s)	28
BsrI	ACTGG	1 cut(s)	213
BssAI	RCCGGY	1 cut(s)	28
BssMI	GATC	3 cut(s)	256, 338, 681
Bst4CI	ACNGT	1 cut(s)	636
Bst6I	CTCTTC	1 cut(s)	423
BstAFI	CTTAAG	1 cut(s)	716
BstC8I	GCNNGC	2 cut(s)	30, 737
BstDEI	CTNAG	3 cut(s)	10, 367, 696
BstF5I	GGATG	4 cut(s)	217, 380, 489, 769
BstKTI	GATC	3 cut(s)	259, 341, 684
BstMBI	GATC	3 cut(s)	256, 338, 681
BstMWI	GCNNNNNNNGC	2 cut(s)	320, 329
BstNSI	RCATGY	3 cut(s)	72, 361, 497
BstSFI	CTRYAG	1 cut(s)	457
BstV1I	GCAGC	2 cut(s)	106, 527
BsuRI	GGCC	1 cut(s)	43
BtsCI	GGATG	4 cut(s)	217, 380, 489, 769
BveI	ACCTGC	1 cut(s)	319
Cac8I	GCNNGC	2 cut(s)	30, 737
CciI	TCATGA	1 cut(s)	424
Cfr10I	RCCGGY	1 cut(s)	28
Csp6I	GTAC	2 cut(s)	18, 526
CspCI	CAANNNNNGTGG	2 cut(s)	159, 194
CviAII	CATG	6 cut(s)	69, 174, 358, 425, 494, 673
CviQI	GTAC	2 cut(s)	18, 526
DdeI	CTNAG	3 cut(s)	10, 367, 696
DpnI	GATC	3 cut(s)	258, 340, 683
DpnII	GATC	3 cut(s)	256, 338, 681
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
Ecl136II	GAGCTC	1 cut(s)	433
Eco147I	AGGCCT	1 cut(s)	43
Eco24I	GRGCYC	1 cut(s)	435
Eco53kI	GAGCTC	1 cut(s)	433
Eco57I	CTGAAG	1 cut(s)	495
Eco88I	CYCGRG	1 cut(s)	413
EcoICRI	GAGCTC	1 cut(s)	433
EcoT38I	GRGCYC	1 cut(s)	435
FaeI	CATG	6 cut(s)	72, 177, 361, 428, 497, 676
FatI	CATG	6 cut(s)	68, 173, 357, 424, 493, 672
FauI	CCCGC	2 cut(s)	56, 227
FauNDI	CATATG	1 cut(s)	564
Fnu4HI	GCNGC	2 cut(s)	120, 516
FokI	GGATG	4 cut(s)	224, 387, 496, 776
FriOI	GRGCYC	1 cut(s)	435
Fsp4HI	GCNGC	2 cut(s)	120, 516
FspBI	CTAG	3 cut(s)	84, 390, 768
GluI	GCNGC	2 cut(s)	120, 516
HaeIII	GGCC	1 cut(s)	43
HapII	CCGG	1 cut(s)	29
Hin1II	CATG	6 cut(s)	72, 177, 361, 428, 497, 676
HincII	GTYRAC	1 cut(s)	171
HindII	GTYRAC	1 cut(s)	171
HinfI	GANTC	4 cut(s)	194, 365, 421, 721
HpaII	CCGG	1 cut(s)	29
HphI	GGTGA	2 cut(s)	302, 476
Hpy166II	GTNNAC	2 cut(s)	171, 557
Hpy188I	TCNGA	3 cut(s)	202, 343, 370
Hpy188III	TCNNGA	2 cut(s)	425, 596
Hpy8I	GTNNAC	2 cut(s)	171, 557
HpyAV	CCTTC	3 cut(s)	109, 312, 634
HpyCH4III	ACNGT	1 cut(s)	636
HpyCH4V	TGCA	6 cut(s)	248, 314, 378, 515, 713, 739
HpyF10VI	GCNNNNNNNGC	2 cut(s)	320, 329
HpyF3I	CTNAG	3 cut(s)	10, 367, 696
Hsp92II	CATG	6 cut(s)	72, 177, 361, 428, 497, 676
KroI	GCCGGC	1 cut(s)	28
KroNI	GCCGGC	1 cut(s)	30
Kzo9I	GATC	3 cut(s)	256, 338, 681
LguI	GCTCTTC	1 cut(s)	423
LmnI	GCTCC	1 cut(s)	80
LpnPI	CCDG	4 cut(s)	42, 194, 273, 324
Lsp1109I	GCAGC	2 cut(s)	106, 527
LweI	GCATC	3 cut(s)	365, 754, 761
MaeI	CTAG	3 cut(s)	84, 390, 768
MaeIII	GTNAC	1 cut(s)	464
MalI	GATC	3 cut(s)	258, 340, 683
MboI	GATC	3 cut(s)	256, 338, 681
MboII	GAAGA	4 cut(s)	215, 440, 488, 783
MhlI	GDGCHC	1 cut(s)	435
MlyI	GAGTC	1 cut(s)	359
MnlI	CCTC	6 cut(s)	54, 70, 101, 396, 464, 601
MroNI	GCCGGC	1 cut(s)	28
MseI	TTAA	4 cut(s)	38, 222, 717, 731
MspA1I	CMGCKG	1 cut(s)	518
MspCI	CTTAAG	1 cut(s)	716
MspI	CCGG	1 cut(s)	29
Mva1269I	GAATGC	1 cut(s)	652
MwoI	GCNNNNNNNGC	2 cut(s)	320, 329
NaeI	GCCGGC	1 cut(s)	30
NdeI	CATATG	1 cut(s)	564
NdeII	GATC	3 cut(s)	256, 338, 681
NgoMIV	GCCGGC	1 cut(s)	28
NlaIII	CATG	6 cut(s)	72, 177, 361, 428, 497, 676
NmuCI	GTSAC	1 cut(s)	464
NspI	RCATGY	3 cut(s)	72, 361, 497
PagI	TCATGA	1 cut(s)	424
PceI	AGGCCT	1 cut(s)	43
PciI	ACATGT	1 cut(s)	493
PciSI	GCTCTTC	1 cut(s)	423
PctI	GAATGC	1 cut(s)	652
PdiI	GCCGGC	1 cut(s)	30
PfeI	GAWTC	3 cut(s)	194, 421, 721
PkrI	GCNGC	2 cut(s)	121, 517
PleI	GAGTC	1 cut(s)	359
PpsI	GAGTC	1 cut(s)	359
PscI	ACATGT	1 cut(s)	493
Psp124BI	GAGCTC	1 cut(s)	435
PvuII	CAGCTG	1 cut(s)	518
RsaI	GTAC	2 cut(s)	19, 527
RsaNI	GTAC	2 cut(s)	18, 526
SacI	GAGCTC	1 cut(s)	435
SapI	GCTCTTC	1 cut(s)	423
SaqAI	TTAA	4 cut(s)	38, 222, 717, 731
SatI	GCNGC	2 cut(s)	120, 516
Sau3AI	GATC	3 cut(s)	256, 338, 681
SchI	GAGTC	1 cut(s)	359
SduI	GDGCHC	1 cut(s)	435
SetI	ASST	9 cut(s)	85, 114, 121, 304, 313, 435, 520, 552, 612
SfaNI	GCATC	3 cut(s)	365, 754, 761
SfcI	CTRYAG	1 cut(s)	457
SmlI	CTYRAG	3 cut(s)	123, 569, 716
SmoI	CTYRAG	3 cut(s)	123, 569, 716
SseBI	AGGCCT	1 cut(s)	43
SsiI	CCGC	3 cut(s)	63, 234, 725
SspMI	CTAG	3 cut(s)	84, 390, 768
SstI	GAGCTC	1 cut(s)	435
StuI	AGGCCT	1 cut(s)	43
TaaI	ACNGT	1 cut(s)	636
TaqI	TCGA	4 cut(s)	114, 363, 435, 597
TatI	WGTACW	1 cut(s)	17
TfiI	GAWTC	3 cut(s)	194, 421, 721
Tru1I	TTAA	4 cut(s)	38, 222, 717, 731
Tru9I	TTAA	4 cut(s)	38, 222, 717, 731
TseFI	GTSAC	1 cut(s)	464
TseI	GCWGC	2 cut(s)	119, 515
Tsp45I	GTSAC	1 cut(s)	464
TspDTI	ATGAA	6 cut(s)	91, 176, 203, 441, 492, 689
TspGWI	ACGGA	2 cut(s)	387, 543
Vha464I	CTTAAG	1 cut(s)	716
XapI	RAATTY	4 cut(s)	142, 154, 224, 261
XceI	RCATGY	3 cut(s)	72, 361, 497
XspI	CTAG	3 cut(s)	84, 390, 768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.