Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0015098

Physical Location & Seq

Genomic Coordinates Reverse (-)

30460625 .. 30463269

Gene Structure 2645 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1230000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGAACGAAGTGTCCGAAGAACTCAATGAGAAGATTAGACTCCTAAGTGGGTTTTCTGTTGCACTTAGAGATAAAATCCACACCGACATATTGTTGCAACCTGGTGATGATGGTCCTCCAGTCCCTGCCCATAGAGCCTTATTGGCAATAAGATTAGAAATTTTTAACAACATTCTAGACTTAGATGGATGCAAGGCTCCACCAAACGACACCATAAAACTGCCCGAACTGAACCATGAAGAGCTCGAGTCTCTCTTGGAATTTCTGTACCATGGGGACTTGTCAGAAGAGAAGATGAACAAACACATCTACTCCTTGTCCCTTGCAGCTGATAAGTATGGAATCTCGTACTTGCAGAAGCTATGTGAGCGTCATATGCATAAGTCTTTGAGCTCAGCCAATGCTCTTGATGTTTTAGAGGTCGCAGACGTTTGTTCCAGCCTAACACTGAGGGAGAATGCCTTGGAATACATTGTTAAAAATATGCATGACATAATTTTCTCTGCTAAATATGATACGTTTGCACTTAAGAATCCACATCTATGTGTACAGATTTCTAGAGCATCATTGATGGATGACAAAAGAAATTCAGTTGTAAGGGAATGTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB

Protein Analysis

204

Amino Acids

23.02

Weight (kDa)

5.34

Isoelectric Point (pI)

49.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	23 - 129	1.6e-15	BTB/POZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56230
fragaria_vesca	FvH4_7g25521
malus_domestica	MD01G1161900.v1.1 MD07G1230000.v1.1
prunus_persica	Prupe.2G260000_v2.0.a1
pyrus_communis	pycom01g17740
rosa_chinensis	RchiOBHm_Chr1g0371521
rosa_laevigata	RLG00000026954
rosa_multiflora	Rmu_sc0000809.1_g000016
rosa_roxburghii	Rroxscaffold_4G00285590
rosa_rugosa	Rorug01G0365000
rosa_samantha	Rh1AG374900 Rh1BG338400 Rh1CG351700 Rh1DG369400
rosa_wichuraiana	Rw1G032980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	159, 260, 586
AfaI	GTAC	3 cut(s)	269, 350, 549
AflII	CTTAAG	1 cut(s)	527
AjnI	CCWGG	1 cut(s)	100
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	4 cut(s)	244, 329, 361, 393
AluI	AGCT	4 cut(s)	244, 329, 361, 393
Alw21I	GWGCWC	2 cut(s)	246, 395
Alw26I	GTCTC	1 cut(s)	255
AlwNI	CAGNNNCTG	1 cut(s)	125
Ama87I	CYCGRG	1 cut(s)	245
ApeKI	GCWGC	1 cut(s)	326
ApoI	RAATTY	3 cut(s)	159, 260, 586
AspS9I	GGNCC	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	116
AvaI	CYCGRG	1 cut(s)	245
AvaII	GGWCC	1 cut(s)	113
BanII	GRGCYC	2 cut(s)	246, 395
Bbv12I	GWGCWC	2 cut(s)	246, 395
BbvI	GCAGC	1 cut(s)	338
BccI	CCATC	3 cut(s)	104, 179, 565
BciT130I	CCWGG	1 cut(s)	102
BcoDI	GTCTC	1 cut(s)	255
BfaI	CTAG	2 cut(s)	176, 558
BfrI	CTTAAG	1 cut(s)	527
BglI	GCCNNNNNGGC	1 cut(s)	143
BisI	GCNGC	1 cut(s)	327
BlpI	GCTNAGC	1 cut(s)	394
BlsI	GCNGC	1 cut(s)	328
Bme1390I	CCNGG	1 cut(s)	102
Bme18I	GGWCC	1 cut(s)	113
BmeT110I	CYCGRG	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	1 cut(s)	198
BmrFI	CCNGG	1 cut(s)	102
BmsI	GCATC	2 cut(s)	179, 572
BpmI	CTGGAG	1 cut(s)	102
Bpu1102I	GCTNAGC	1 cut(s)	394
BsaJI	CCNNGG	2 cut(s)	271, 462
BsaXI	ACNNNNNCTCC	2 cut(s)	296, 326
Bse1I	ACTGG	1 cut(s)	119
BseBI	CCWGG	1 cut(s)	102
BseDI	CCNNGG	2 cut(s)	271, 462
BseGI	GGATG	2 cut(s)	194, 580
BseMII	CTCAG	2 cut(s)	408, 440
BseNI	ACTGG	1 cut(s)	119
BseXI	GCAGC	1 cut(s)	338
BsiHKAI	GWGCWC	2 cut(s)	246, 395
BsiHKCI	CYCGRG	1 cut(s)	245
BslFI	GGGAC	3 cut(s)	107, 290, 304
BsmAI	GTCTC	1 cut(s)	255
BsmFI	GGGAC	3 cut(s)	107, 290, 304
BsmI	GAATGC	1 cut(s)	463
BsoBI	CYCGRG	1 cut(s)	245
Bsp1286I	GDGCHC	2 cut(s)	246, 395
Bsp1407I	TGTACA	1 cut(s)	547
Bsp1720I	GCTNAGC	1 cut(s)	394
Bsp19I	CCATGG	1 cut(s)	271
BspCNI	CTCAG	2 cut(s)	407, 441
BspLI	GGNNCC	1 cut(s)	198
BspQI	GCTCTTC	1 cut(s)	234
BspTI	CTTAAG	1 cut(s)	527
BsrGI	TGTACA	1 cut(s)	547
BsrI	ACTGG	1 cut(s)	119
BssECI	CCNNGG	2 cut(s)	271, 462
BssT1I	CCWWGG	2 cut(s)	271, 462
Bst2UI	CCWGG	1 cut(s)	102
Bst6I	CTCTTC	2 cut(s)	234, 282
BstAFI	CTTAAG	1 cut(s)	527
BstAUI	TGTACA	1 cut(s)	547
BstDEI	CTNAG	5 cut(s)	44, 65, 181, 394, 449
BstDSI	CCRYGG	1 cut(s)	271
BstF5I	GGATG	2 cut(s)	194, 580
BstMAI	GTCTC	1 cut(s)	255
BstMWI	GCNNNNNNNGC	4 cut(s)	134, 143, 367, 376
BstNI	CCWGG	1 cut(s)	102
BstSCI	CCNGG	1 cut(s)	100
BstV1I	GCAGC	1 cut(s)	338
BtgI	CCRYGG	1 cut(s)	271
BtsCI	GGATG	2 cut(s)	194, 580
BtsIMutI	CAGTG	1 cut(s)	446
CaiI	CAGNNNCTG	1 cut(s)	125
Cfr13I	GGNCC	1 cut(s)	113
CseI	GACGC	1 cut(s)	359
CsiI	ACCWGGT	1 cut(s)	100
Csp6I	GTAC	3 cut(s)	268, 349, 548
CviAII	CATG	3 cut(s)	236, 272, 488
CviJI	RGCY	8 cut(s)	137, 197, 244, 329, 361, 393, 398, 441
CviKI_1	RGCY	8 cut(s)	137, 197, 244, 329, 361, 393, 398, 441
CviQI	GTAC	3 cut(s)	268, 349, 548
DdeI	CTNAG	5 cut(s)	44, 65, 181, 394, 449
Eam1104I	CTCTTC	2 cut(s)	234, 282
EarI	CTCTTC	2 cut(s)	234, 282
Ecl136II	GAGCTC	2 cut(s)	244, 393
Eco130I	CCWWGG	2 cut(s)	271, 462
Eco24I	GRGCYC	2 cut(s)	246, 395
Eco47I	GGWCC	1 cut(s)	113
Eco53kI	GAGCTC	2 cut(s)	244, 393
Eco88I	CYCGRG	1 cut(s)	245
EcoICRI	GAGCTC	2 cut(s)	244, 393
EcoRII	CCWGG	1 cut(s)	100
EcoT14I	CCWWGG	2 cut(s)	271, 462
EcoT22I	ATGCAT	2 cut(s)	381, 489
EcoT38I	GRGCYC	2 cut(s)	246, 395
ErhI	CCWWGG	2 cut(s)	271, 462
FaeI	CATG	3 cut(s)	239, 275, 491
FaqI	GGGAC	3 cut(s)	107, 290, 304
FatI	CATG	3 cut(s)	235, 271, 487
FauNDI	CATATG	1 cut(s)	375
Fnu4HI	GCNGC	1 cut(s)	327
FokI	GGATG	2 cut(s)	201, 587
FriOI	GRGCYC	2 cut(s)	246, 395
Fsp4HI	GCNGC	1 cut(s)	327
FspBI	CTAG	2 cut(s)	176, 558
GluI	GCNGC	1 cut(s)	327
GsuI	CTGGAG	1 cut(s)	102
HgaI	GACGC	1 cut(s)	359
Hin1II	CATG	3 cut(s)	239, 275, 491
HinfI	GANTC	4 cut(s)	39, 248, 342, 532
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	1 cut(s)	548
Hpy188I	TCNGA	2 cut(s)	16, 286
Hpy188III	TCNNGA	3 cut(s)	176, 407, 558
Hpy8I	GTNNAC	1 cut(s)	548
HpyCH4IV	ACGT	2 cut(s)	429, 518
HpyCH4V	TGCA	8 cut(s)	62, 97, 192, 326, 355, 379, 487, 524
HpyF10VI	GCNNNNNNNGC	4 cut(s)	134, 143, 367, 376
HpyF3I	CTNAG	5 cut(s)	44, 65, 181, 394, 449
HpySE526I	ACGT	2 cut(s)	429, 518
Hsp92II	CATG	3 cut(s)	239, 275, 491
LguI	GCTCTTC	1 cut(s)	234
LmnI	GCTCC	1 cut(s)	202
LpnPI	CCDG	5 cut(s)	87, 114, 132, 138, 451
Lsp1109I	GCAGC	1 cut(s)	338
LweI	GCATC	2 cut(s)	179, 572
MabI	ACCWGGT	1 cut(s)	100
MaeI	CTAG	2 cut(s)	176, 558
MaeII	ACGT	2 cut(s)	429, 518
MboII	GAAGA	5 cut(s)	29, 43, 251, 299, 304
MhlI	GDGCHC	2 cut(s)	246, 395
MluCI	AATT	4 cut(s)	159, 260, 495, 586
MlyI	GAGTC	2 cut(s)	33, 257
MnlI	CCTC	3 cut(s)	126, 412, 444
Mph1103I	ATGCAT	2 cut(s)	381, 489
MseI	TTAA	3 cut(s)	165, 477, 528
MslI	CAYNNNNRTG	2 cut(s)	541, 543
MspA1I	CMGCKG	1 cut(s)	329
MspCI	CTTAAG	1 cut(s)	527
MspR9I	CCNGG	1 cut(s)	102
Mva1269I	GAATGC	1 cut(s)	463
MvaI	CCWGG	1 cut(s)	102
MwoI	GCNNNNNNNGC	4 cut(s)	134, 143, 367, 376
NcoI	CCATGG	1 cut(s)	271
NdeI	CATATG	1 cut(s)	375
NlaIII	CATG	3 cut(s)	239, 275, 491
NlaIV	GGNNCC	1 cut(s)	198
NsiI	ATGCAT	2 cut(s)	381, 489
PaeR7I	CTCGAG	1 cut(s)	245
PciSI	GCTCTTC	1 cut(s)	234
PcsI	WCGNNNNNNNCGW	1 cut(s)	12
PctI	GAATGC	1 cut(s)	463
PfeI	GAWTC	2 cut(s)	342, 532
PkrI	GCNGC	1 cut(s)	328
PleI	GAGTC	2 cut(s)	33, 256
PpsI	GAGTC	2 cut(s)	33, 256
Psp124BI	GAGCTC	2 cut(s)	246, 395
Psp6I	CCWGG	1 cut(s)	100
PspGI	CCWGG	1 cut(s)	100
PspN4I	GGNNCC	1 cut(s)	198
PspPI	GGNCC	1 cut(s)	113
PspXI	VCTCGAGB	1 cut(s)	245
PstNI	CAGNNNCTG	1 cut(s)	125
PvuII	CAGCTG	1 cut(s)	329
RsaI	GTAC	3 cut(s)	269, 350, 549
RsaNI	GTAC	3 cut(s)	268, 349, 548
RseI	CAYNNNNRTG	2 cut(s)	541, 543
SacI	GAGCTC	2 cut(s)	246, 395
SapI	GCTCTTC	1 cut(s)	234
SaqAI	TTAA	3 cut(s)	165, 477, 528
SatI	GCNGC	1 cut(s)	327
Sau96I	GGNCC	1 cut(s)	113
SchI	GAGTC	2 cut(s)	33, 257
ScrFI	CCNGG	1 cut(s)	102
SduI	GDGCHC	2 cut(s)	246, 395
SetI	ASST	8 cut(s)	103, 246, 331, 363, 395, 423, 432, 521
SexAI	ACCWGGT	1 cut(s)	100
SfaNI	GCATC	2 cut(s)	179, 572
Sfr274I	CTCGAG	1 cut(s)	245
SinI	GGWCC	1 cut(s)	113
SlaI	CTCGAG	1 cut(s)	245
SmiMI	CAYNNNNRTG	2 cut(s)	541, 543
SmlI	CTYRAG	2 cut(s)	245, 527
SmoI	CTYRAG	2 cut(s)	245, 527
Sse9I	AATT	4 cut(s)	159, 260, 495, 586
SspMI	CTAG	2 cut(s)	176, 558
SstI	GAGCTC	2 cut(s)	246, 395
StyD4I	CCNGG	1 cut(s)	100
StyI	CCWWGG	2 cut(s)	271, 462
TaiI	ACGT	2 cut(s)	432, 521
TaqI	TCGA	1 cut(s)	246
TasI	AATT	4 cut(s)	159, 260, 495, 586
TatI	WGTACW	1 cut(s)	547
TfiI	GAWTC	2 cut(s)	342, 532
Tru1I	TTAA	3 cut(s)	165, 477, 528
Tru9I	TTAA	3 cut(s)	165, 477, 528
TscAI	CASTG	1 cut(s)	453
TseI	GCWGC	1 cut(s)	326
TspDTI	ATGAA	3 cut(s)	17, 252, 311
TspRI	CASTG	1 cut(s)	453
Vha464I	CTTAAG	1 cut(s)	527
VpaK11BI	GGWCC	1 cut(s)	113
XapI	RAATTY	3 cut(s)	159, 260, 586
XbaI	TCTAGA	2 cut(s)	175, 557
XhoI	CTCGAG	1 cut(s)	245
XspI	CTAG	2 cut(s)	176, 558
Zsp2I	ATGCAT	2 cut(s)	381, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.