Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0015098

Physical Location & Seq

Genomic Coordinates Forward (+)

6862174 .. 6865848

Gene Structure 3675 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00285590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGAGTCAATTCAGTCTTGGGTTTCAAAGAACAAGCTGGCCAGCATTGGAGGACTATGGGCATCAGGAGTTGTAGCATCCCTTGCTTATTCAACTGCAAGAACACCTCTCAAGACCAGCCTTAAGCTTATACATGCTAGGTTTGAGATTAAGGCAGATATGGACTGCTCAGTTTGTACTTCAATGCCGGCTCAATTAAGGCCTCCAAGAAATACGATATGCGGGGCATGTTATGAGGGAGCTAGAAGCCTCATCTCCTTCATAAACAAGCTCGAAGCTGCTCAAGGAATTGATAAAGCAAATTTGTGTAAGGCAAGCTCAAATTTGATGAATGTGTCAACATGGGTGCTTGATATGAAAGATTCATCAGAAGAACTGGATGAGAAAATTAAATTCGTAAGCGGGTTTGTTGTTGCATTTAGAGATCAAATTCACACCGACATACTACTTCGTTCTGGCGAAAACAGACCTCCAATACCTGCACATAGAGCGTTATTGGCAATTAGATCGGAAATCTTTAGCAACATGCTCGACTCAGACGGATGCAAAGCCCCTCCTAGTGATGACACCATAACATTGCCCGAGTTGAATCATGAAGAGCTCGAGTGTTTCTTGGAACTCCTCTATAGTGGTGACTTGGCTGAAGAAAGGATGAGCAAGCATGTCTATTCGTTATCCCTTGCAGCTGATAAGTACGGAGTATCATTCTTACAAAAGCTCTGTGAACGCCATATGCTCAAGTCTTTGAGTTCGTCCAATGCTCTCGATGTTTTAGAGATCGCAGACACTTGTTCTTTTCTACTGTTGAAGGAGAATGCCTTGAACTACATTGTCAAAAACATGAAAGAGATCATATTTTCTGCTAAGTATGATACATTTGCACTTAAGAATCCGCATTTAAGCGTGCAAATTACAAGGGAATCATTGATGGATGCTAGAAGAAATTGCGTGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB

Protein Analysis

318

Amino Acids

35.31

Weight (kDa)

6.19

Isoelectric Point (pI)

39.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	141 - 248	3.5e-16	BTB/POZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56230
fragaria_vesca	FvH4_7g25521
malus_domestica	MD01G1161900.v1.1 MD07G1230000.v1.1
prunus_persica	Prupe.2G260000_v2.0.a1
pyrus_communis	pycom01g17740
rosa_chinensis	RchiOBHm_Chr1g0371521
rosa_laevigata	RLG00000026954
rosa_multiflora	Rmu_sc0000809.1_g000016
rosa_roxburghii	Rroxscaffold_4G00285590
rosa_rugosa	Rorug01G0365000
rosa_samantha	Rh1AG374900 Rh1BG338400 Rh1CG351700 Rh1DG369400
rosa_wichuraiana	Rw1G032980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	487
AciI	CCGC	3 cut(s)	222, 402, 893
AcoI	YGGCCR	1 cut(s)	39
AcsI	RAATTY	4 cut(s)	301, 322, 392, 429
AcuI	CTGAAG	1 cut(s)	663
AfaI	GTAC	2 cut(s)	178, 695
AflII	CTTAAG	2 cut(s)	122, 884
AgsI	TTSAA	6 cut(s)	27, 93, 183, 589, 808, 823
AluBI	AGCT	9 cut(s)	37, 127, 242, 271, 278, 318, 601, 686, 718
AluI	AGCT	9 cut(s)	37, 127, 242, 271, 278, 318, 601, 686, 718
Alw21I	GWGCWC	1 cut(s)	603
Ama87I	CYCGRG	2 cut(s)	581, 602
AoxI	GGCC	2 cut(s)	39, 200
ApeKI	GCWGC	2 cut(s)	278, 683
ApoI	RAATTY	4 cut(s)	301, 322, 392, 429
AsuHPI	GGTGA	1 cut(s)	644
AvaI	CYCGRG	2 cut(s)	581, 602
BalI	TGGCCA	1 cut(s)	41
BanII	GRGCYC	1 cut(s)	603
Bbv12I	GWGCWC	1 cut(s)	603
BbvI	GCAGC	2 cut(s)	265, 695
BccI	CCATC	1 cut(s)	922
BcgI	CGANNNNNNTGC	4 cut(s)	489, 511, 523, 545
BfaI	CTAG	4 cut(s)	138, 243, 558, 936
BfmI	CTRYAG	1 cut(s)	625
BfrI	CTTAAG	2 cut(s)	122, 884
BfuAI	ACCTGC	1 cut(s)	487
BisI	GCNGC	2 cut(s)	279, 684
BlsI	GCNGC	2 cut(s)	280, 685
BmeT110I	CYCGRG	2 cut(s)	581, 602
BmsI	GCATC	4 cut(s)	71, 86, 533, 922
BpuEI	CTTGAG	3 cut(s)	95, 267, 722
Bse118I	RCCGGY	1 cut(s)	187
Bse1I	ACTGG	1 cut(s)	381
Bse3DI	GCAATG	1 cut(s)	575
BseGI	GGATG	5 cut(s)	77, 385, 548, 657, 937
BseMI	GCAATG	1 cut(s)	575
BseMII	CTCAG	2 cut(s)	183, 549
BseNI	ACTGG	1 cut(s)	381
BseRI	GAGGAG	1 cut(s)	611
BseXI	GCAGC	2 cut(s)	265, 695
BsgI	GTGCAG	1 cut(s)	465
BshFI	GGCC	2 cut(s)	41, 202
BsiHKAI	GWGCWC	1 cut(s)	603
BsiHKCI	CYCGRG	2 cut(s)	581, 602
BsiSI	CCGG	1 cut(s)	188
BsmI	GAATGC	1 cut(s)	820
BsnI	GGCC	2 cut(s)	41, 202
BsoBI	CYCGRG	2 cut(s)	581, 602
Bsp1286I	GDGCHC	1 cut(s)	603
Bsp143I	GATC	4 cut(s)	424, 506, 777, 849
BspACI	CCGC	3 cut(s)	222, 402, 893
BspANI	GGCC	2 cut(s)	41, 202
BspCNI	CTCAG	2 cut(s)	182, 548
BspHI	TCATGA	1 cut(s)	592
BspMI	ACCTGC	1 cut(s)	487
BspQI	GCTCTTC	1 cut(s)	591
BspTI	CTTAAG	2 cut(s)	122, 884
BsrDI	GCAATG	1 cut(s)	575
BsrFI	RCCGGY	1 cut(s)	187
BsrI	ACTGG	1 cut(s)	381
BssAI	RCCGGY	1 cut(s)	187
BssMI	GATC	4 cut(s)	424, 506, 777, 849
Bst4CI	ACNGT	1 cut(s)	804
Bst6I	CTCTTC	1 cut(s)	591
BstAFI	CTTAAG	2 cut(s)	122, 884
BstAPI	GCANNNNNTGC	1 cut(s)	83
BstC8I	GCNNGC	6 cut(s)	39, 43, 189, 316, 659, 905
BstDEI	CTNAG	3 cut(s)	169, 535, 864
BstF5I	GGATG	5 cut(s)	77, 385, 548, 657, 937
BstKTI	GATC	4 cut(s)	427, 509, 780, 852
BstMBI	GATC	4 cut(s)	424, 506, 777, 849
BstMWI	GCNNNNNNNGC	3 cut(s)	83, 488, 497
BstNSI	RCATGY	4 cut(s)	137, 231, 529, 665
BstSFI	CTRYAG	1 cut(s)	625
BstV1I	GCAGC	2 cut(s)	265, 695
BsuRI	GGCC	2 cut(s)	41, 202
BtsCI	GGATG	5 cut(s)	77, 385, 548, 657, 937
BveI	ACCTGC	1 cut(s)	487
Cac8I	GCNNGC	6 cut(s)	39, 43, 189, 316, 659, 905
CciI	TCATGA	1 cut(s)	592
Cfr10I	RCCGGY	1 cut(s)	187
Csp6I	GTAC	2 cut(s)	177, 694
CviAII	CATG	7 cut(s)	134, 228, 342, 526, 593, 662, 841
CviQI	GTAC	2 cut(s)	177, 694
DdeI	CTNAG	3 cut(s)	169, 535, 864
DpnI	GATC	4 cut(s)	426, 508, 779, 851
DpnII	GATC	4 cut(s)	424, 506, 777, 849
EaeI	YGGCCR	1 cut(s)	39
Eam1104I	CTCTTC	1 cut(s)	591
EarI	CTCTTC	1 cut(s)	591
Ecl136II	GAGCTC	1 cut(s)	601
Eco147I	AGGCCT	1 cut(s)	202
Eco24I	GRGCYC	1 cut(s)	603
Eco53kI	GAGCTC	1 cut(s)	601
Eco57I	CTGAAG	1 cut(s)	663
Eco88I	CYCGRG	2 cut(s)	581, 602
EcoICRI	GAGCTC	1 cut(s)	601
EcoT38I	GRGCYC	1 cut(s)	603
FaeI	CATG	7 cut(s)	137, 231, 345, 529, 596, 665, 844
FatI	CATG	7 cut(s)	133, 227, 341, 525, 592, 661, 840
FauI	CCCGC	2 cut(s)	215, 395
FauNDI	CATATG	1 cut(s)	732
Fnu4HI	GCNGC	2 cut(s)	279, 684
FokI	GGATG	5 cut(s)	64, 392, 555, 664, 944
FriOI	GRGCYC	1 cut(s)	603
Fsp4HI	GCNGC	2 cut(s)	279, 684
FspBI	CTAG	4 cut(s)	138, 243, 558, 936
GluI	GCNGC	2 cut(s)	279, 684
HaeIII	GGCC	2 cut(s)	41, 202
HapII	CCGG	1 cut(s)	188
Hin1II	CATG	7 cut(s)	137, 231, 345, 529, 596, 665, 844
HincII	GTYRAC	1 cut(s)	339
HindII	GTYRAC	1 cut(s)	339
HindIII	AAGCTT	1 cut(s)	125
HinfI	GANTC	6 cut(s)	5, 362, 533, 589, 889, 920
HpaII	CCGG	1 cut(s)	188
HphI	GGTGA	1 cut(s)	644
Hpy166II	GTNNAC	2 cut(s)	339, 725
Hpy188I	TCNGA	3 cut(s)	370, 511, 538
Hpy188III	TCNNGA	4 cut(s)	66, 112, 593, 764
Hpy8I	GTNNAC	2 cut(s)	339, 725
HpyAV	CCTTC	2 cut(s)	268, 802
HpyCH4III	ACNGT	1 cut(s)	804
HpyCH4V	TGCA	7 cut(s)	98, 416, 482, 546, 683, 881, 907
HpyF10VI	GCNNNNNNNGC	3 cut(s)	83, 488, 497
HpyF3I	CTNAG	3 cut(s)	169, 535, 864
Hsp92II	CATG	7 cut(s)	137, 231, 345, 529, 596, 665, 844
KroI	GCCGGC	1 cut(s)	187
KroNI	GCCGGC	1 cut(s)	189
Kzo9I	GATC	4 cut(s)	424, 506, 777, 849
LguI	GCTCTTC	1 cut(s)	591
LmnI	GCTCC	1 cut(s)	239
LpnPI	CCDG	8 cut(s)	23, 51, 55, 130, 201, 362, 441, 492
Lsp1109I	GCAGC	2 cut(s)	265, 695
LweI	GCATC	4 cut(s)	71, 86, 533, 922
MaeI	CTAG	4 cut(s)	138, 243, 558, 936
MaeIII	GTNAC	1 cut(s)	632
MalI	GATC	4 cut(s)	426, 508, 779, 851
MboI	GATC	4 cut(s)	424, 506, 777, 849
MboII	GAAGA	4 cut(s)	383, 608, 656, 951
MhlI	GDGCHC	1 cut(s)	603
MlsI	TGGCCA	1 cut(s)	41
MluNI	TGGCCA	1 cut(s)	41
MlyI	GAGTC	2 cut(s)	14, 527
MnlI	CCTC	8 cut(s)	44, 117, 213, 229, 260, 480, 564, 632
Mox20I	TGGCCA	1 cut(s)	41
MroNI	GCCGGC	1 cut(s)	187
MscI	TGGCCA	1 cut(s)	41
MseI	TTAA	6 cut(s)	123, 150, 197, 390, 885, 899
Msp20I	TGGCCA	1 cut(s)	41
MspA1I	CMGCKG	1 cut(s)	686
MspCI	CTTAAG	2 cut(s)	122, 884
MspI	CCGG	1 cut(s)	188
Mva1269I	GAATGC	1 cut(s)	820
MwoI	GCNNNNNNNGC	3 cut(s)	83, 488, 497
NaeI	GCCGGC	1 cut(s)	189
NdeI	CATATG	1 cut(s)	732
NdeII	GATC	4 cut(s)	424, 506, 777, 849
NgoMIV	GCCGGC	1 cut(s)	187
NlaIII	CATG	7 cut(s)	137, 231, 345, 529, 596, 665, 844
NmuCI	GTSAC	1 cut(s)	632
NspI	RCATGY	4 cut(s)	137, 231, 529, 665
PaeR7I	CTCGAG	1 cut(s)	602
PagI	TCATGA	1 cut(s)	592
PceI	AGGCCT	1 cut(s)	202
PciSI	GCTCTTC	1 cut(s)	591
PctI	GAATGC	1 cut(s)	820
PdiI	GCCGGC	1 cut(s)	189
PfeI	GAWTC	4 cut(s)	362, 589, 889, 920
PkrI	GCNGC	2 cut(s)	280, 685
PleI	GAGTC	2 cut(s)	13, 527
PpsI	GAGTC	2 cut(s)	13, 527
Psp124BI	GAGCTC	1 cut(s)	603
PspXI	VCTCGAGB	1 cut(s)	602
PvuII	CAGCTG	1 cut(s)	686
RsaI	GTAC	2 cut(s)	178, 695
RsaNI	GTAC	2 cut(s)	177, 694
SacI	GAGCTC	1 cut(s)	603
SapI	GCTCTTC	1 cut(s)	591
SaqAI	TTAA	6 cut(s)	123, 150, 197, 390, 885, 899
SatI	GCNGC	2 cut(s)	279, 684
Sau3AI	GATC	4 cut(s)	424, 506, 777, 849
SchI	GAGTC	2 cut(s)	14, 527
SduI	GDGCHC	1 cut(s)	603
SfaNI	GCATC	4 cut(s)	71, 86, 533, 922
SfcI	CTRYAG	1 cut(s)	625
Sfr274I	CTCGAG	1 cut(s)	602
SlaI	CTCGAG	1 cut(s)	602
SmlI	CTYRAG	6 cut(s)	110, 122, 282, 602, 737, 884
SmoI	CTYRAG	6 cut(s)	110, 122, 282, 602, 737, 884
SseBI	AGGCCT	1 cut(s)	202
SsiI	CCGC	3 cut(s)	222, 402, 893
SspMI	CTAG	4 cut(s)	138, 243, 558, 936
SstI	GAGCTC	1 cut(s)	603
StuI	AGGCCT	1 cut(s)	202
TaaI	ACNGT	1 cut(s)	804
TaqI	TCGA	4 cut(s)	273, 531, 603, 765
TatI	WGTACW	1 cut(s)	176
TfiI	GAWTC	4 cut(s)	362, 589, 889, 920
Tru1I	TTAA	6 cut(s)	123, 150, 197, 390, 885, 899
Tru9I	TTAA	6 cut(s)	123, 150, 197, 390, 885, 899
TseFI	GTSAC	1 cut(s)	632
TseI	GCWGC	2 cut(s)	278, 683
Tsp45I	GTSAC	1 cut(s)	632
TspDTI	ATGAA	6 cut(s)	250, 344, 354, 371, 609, 857
TspGWI	ACGGA	2 cut(s)	555, 711
Vha464I	CTTAAG	2 cut(s)	122, 884
XapI	RAATTY	4 cut(s)	301, 322, 392, 429
XceI	RCATGY	4 cut(s)	137, 231, 529, 665
XhoI	CTCGAG	1 cut(s)	602
XspI	CTAG	4 cut(s)	138, 243, 558, 936

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.