Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0015098

Physical Location & Seq

Genomic Coordinates Reverse (-)

19459748 .. 19461477

Gene Structure 1730 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g25521.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGCCTCTATGTAAAATTGTAGATACGTTCCAAATTAAGAAGCAGCAGCAGCTTCTCCGGCCTAGAGCTTCTTCTTCTTTTCTTGTTTTCTGTAACTGTGGTTTCTCAAGGTTTGAGATTAAGGCAGATATGGACTGCTCCGTCTGTACTACAATGCCAGTTCAATTACGGCCTCCAAGAAATACGATATGCGGGACATGTTTTGAGGGAGCTAGAAGCCTTATCTCCTTCGTAAACAAGCTCGAAGCTGCTCAAGGAATTGACAGAGCAAATTTGTGCAAGAATTTGATGAATGTGTCAACATGGGTGCTTGATATGAAAGACTCGGCACAAGAACTCGATGAGAAAATTAAGTTCCTAAGCGGGCTTGTTGTTGCATTTAGAAACCAAATCCACACCGACATACAAATTCGTTCCGGTGAAAACAGACCTCCAATACCTGCACACAGAGCGTTATTGGCAATTCGATCGGAAATCTTTAGCAACATGCTGGACTCAGACGGATGCAAAGCTCCACCTATCGACGACACCATAACATTGCCGGAGTTGAATCACGAAGAGCTCGAGTCTTTCTTGGAACTCCTCTATAGTGGTGACTTGACTGAAGAAACGATGAGCAAGCATGTCTACTCATTATCCCTTGCAGCTGATAAGTACGGAATATCATACTTACAAAAGCTCTGTGAACGCTACATGCACAAGTCTTTGAGTTCTTCGAATGCTCTCGATGTTTTAGAGGTCGCGGATACTTGTTCCTTTTTAACGTTGAAGGAGAATGCCTTGAACTACATTGTCAAAAACATGCAGGAGATCGTGTTTTCTGCCAAGTATGATACATTTGCACTTAAAAATCCGCACTTAAGCGTGCAAATTACAAGGGCGTCATTGATGGATGCTAAAAGAAATTGTGTGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB

Protein Analysis

306

Amino Acids

34.31

Weight (kDa)

6.32

Isoelectric Point (pI)

38.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	128 - 235	7.6e-17	BTB/POZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56230
fragaria_vesca	FvH4_7g25521
malus_domestica	MD01G1161900.v1.1 MD07G1230000.v1.1
prunus_persica	Prupe.2G260000_v2.0.a1
pyrus_communis	pycom01g17740
rosa_chinensis	RchiOBHm_Chr1g0371521
rosa_laevigata	RLG00000026954
rosa_multiflora	Rmu_sc0000809.1_g000016
rosa_roxburghii	Rroxscaffold_4G00285590
rosa_rugosa	Rorug01G0365000
rosa_samantha	Rh1AG374900 Rh1BG338400 Rh1CG351700 Rh1DG369400
rosa_wichuraiana	Rw1G032980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	140
Acc36I	ACCTGC	1 cut(s)	448
AccI	GTMKAC	1 cut(s)	627
AccII	CGCG	1 cut(s)	743
AciI	CCGC	4 cut(s)	192, 363, 743, 854
AclI	AACGTT	1 cut(s)	764
AcsI	RAATTY	3 cut(s)	271, 283, 408
AcuI	CTGAAG	1 cut(s)	624
AcyI	GRCGYC	1 cut(s)	881
AfaI	GTAC	2 cut(s)	148, 656
AflII	CTTAAG	1 cut(s)	859
AflIII	ACRYGT	1 cut(s)	197
AgsI	TTSAA	4 cut(s)	164, 550, 769, 784
AluBI	AGCT	9 cut(s)	52, 68, 212, 241, 248, 512, 562, 647, 679
AluI	AGCT	9 cut(s)	52, 68, 212, 241, 248, 512, 562, 647, 679
Alw21I	GWGCWC	1 cut(s)	564
Ama87I	CYCGRG	1 cut(s)	563
AoxI	GGCC	2 cut(s)	59, 170
ApeKI	GCWGC	5 cut(s)	43, 46, 49, 248, 644
ApoI	RAATTY	3 cut(s)	271, 283, 408
AsuHPI	GGTGA	2 cut(s)	431, 605
AsuII	TTCGAA	1 cut(s)	716
AvaI	CYCGRG	1 cut(s)	563
BanII	GRGCYC	1 cut(s)	564
Bbv12I	GWGCWC	1 cut(s)	564
BbvI	GCAGC	5 cut(s)	55, 58, 61, 235, 656
BccI	CCATC	1 cut(s)	883
BceAI	ACGGC	1 cut(s)	185
BcgI	CGANNNNNNTGC	2 cut(s)	450, 484
BciVI	GTATCC	1 cut(s)	739
BfaI	CTAG	2 cut(s)	63, 213
BfmI	CTRYAG	1 cut(s)	586
BfrI	CTTAAG	1 cut(s)	859
BfuAI	ACCTGC	1 cut(s)	448
BfuI	GTATCC	1 cut(s)	739
BisI	GCNGC	5 cut(s)	44, 47, 50, 249, 645
BlsI	GCNGC	5 cut(s)	45, 48, 51, 250, 646
BmeT110I	CYCGRG	1 cut(s)	563
BmsI	GCATC	2 cut(s)	494, 883
Bpu10I	CCTNAGC	1 cut(s)	359
Bpu14I	TTCGAA	1 cut(s)	716
BpuEI	CTTGAG	2 cut(s)	91, 237
BsaHI	GRCGYC	1 cut(s)	881
BsaWI	WCCGGW	1 cut(s)	416
BsaXI	ACNNNNNCTCC	2 cut(s)	800, 830
Bse1I	ACTGG	1 cut(s)	158
Bse3DI	GCAATG	1 cut(s)	536
BseGI	GGATG	2 cut(s)	509, 898
BseMI	GCAATG	1 cut(s)	536
BseMII	CTCAG	1 cut(s)	510
BseNI	ACTGG	1 cut(s)	158
BseRI	GAGGAG	1 cut(s)	572
BseXI	GCAGC	5 cut(s)	55, 58, 61, 235, 656
BsgI	GTGCAG	1 cut(s)	426
Bsh1236I	CGCG	1 cut(s)	743
Bsh1285I	CGRYCG	1 cut(s)	470
BshFI	GGCC	2 cut(s)	61, 172
BsiEI	CGRYCG	1 cut(s)	470
BsiHKAI	GWGCWC	1 cut(s)	564
BsiHKCI	CYCGRG	1 cut(s)	563
BsiSI	CCGG	3 cut(s)	58, 417, 542
BslFI	GGGAC	1 cut(s)	208
BsmFI	GGGAC	1 cut(s)	208
BsmI	GAATGC	2 cut(s)	724, 781
BsnI	GGCC	2 cut(s)	61, 172
BsoBI	CYCGRG	1 cut(s)	563
Bsp119I	TTCGAA	1 cut(s)	716
Bsp1286I	GDGCHC	1 cut(s)	564
Bsp143I	GATC	2 cut(s)	467, 810
BspACI	CCGC	4 cut(s)	192, 363, 743, 854
BspANI	GGCC	2 cut(s)	61, 172
BspCNI	CTCAG	1 cut(s)	509
BspFNI	CGCG	1 cut(s)	743
BspMI	ACCTGC	1 cut(s)	448
BspQI	GCTCTTC	1 cut(s)	552
BspT104I	TTCGAA	1 cut(s)	716
BspTI	CTTAAG	1 cut(s)	859
BsrDI	GCAATG	1 cut(s)	536
BsrI	ACTGG	1 cut(s)	158
BssMI	GATC	2 cut(s)	467, 810
BssNI	GRCGYC	1 cut(s)	881
Bst4CI	ACNGT	1 cut(s)	98
Bst6I	CTCTTC	1 cut(s)	552
BstACI	GRCGYC	1 cut(s)	881
BstAFI	CTTAAG	1 cut(s)	859
BstBI	TTCGAA	1 cut(s)	716
BstC8I	GCNNGC	3 cut(s)	365, 620, 866
BstDEI	CTNAG	2 cut(s)	359, 496
BstF5I	GGATG	2 cut(s)	509, 898
BstFNI	CGCG	1 cut(s)	743
BstKTI	GATC	2 cut(s)	470, 813
BstMBI	GATC	2 cut(s)	467, 810
BstMCI	CGRYCG	1 cut(s)	470
BstMWI	GCNNNNNNNGC	4 cut(s)	49, 58, 449, 458
BstNSI	RCATGY	5 cut(s)	201, 490, 626, 697, 805
BstSFI	CTRYAG	1 cut(s)	586
BstUI	CGCG	1 cut(s)	743
BstV1I	GCAGC	5 cut(s)	55, 58, 61, 235, 656
BsuI	GTATCC	1 cut(s)	739
BsuRI	GGCC	2 cut(s)	61, 172
BtsCI	GGATG	2 cut(s)	509, 898
BveI	ACCTGC	1 cut(s)	448
Cac8I	GCNNGC	3 cut(s)	365, 620, 866
CseI	GACGC	1 cut(s)	870
Csp6I	GTAC	2 cut(s)	147, 655
CviAII	CATG	6 cut(s)	198, 303, 487, 623, 694, 802
CviQI	GTAC	2 cut(s)	147, 655
DdeI	CTNAG	2 cut(s)	359, 496
DpnI	GATC	2 cut(s)	469, 812
DpnII	GATC	2 cut(s)	467, 810
DrdI	GACNNNNNNGTC	1 cut(s)	140
DseDI	GACNNNNNNGTC	1 cut(s)	140
Eam1104I	CTCTTC	1 cut(s)	552
EarI	CTCTTC	1 cut(s)	552
Ecl136II	GAGCTC	1 cut(s)	562
Eco24I	GRGCYC	1 cut(s)	564
Eco53kI	GAGCTC	1 cut(s)	562
Eco57I	CTGAAG	1 cut(s)	624
Eco88I	CYCGRG	1 cut(s)	563
EcoICRI	GAGCTC	1 cut(s)	562
EcoT38I	GRGCYC	1 cut(s)	564
FaeI	CATG	6 cut(s)	201, 306, 490, 626, 697, 805
FaqI	GGGAC	1 cut(s)	208
FatI	CATG	6 cut(s)	197, 302, 486, 622, 693, 801
FauI	CCCGC	2 cut(s)	185, 356
FblI	GTMKAC	1 cut(s)	627
Fnu4HI	GCNGC	5 cut(s)	44, 47, 50, 249, 645
FokI	GGATG	2 cut(s)	516, 905
FriOI	GRGCYC	1 cut(s)	564
Fsp4HI	GCNGC	5 cut(s)	44, 47, 50, 249, 645
FspBI	CTAG	2 cut(s)	63, 213
GluI	GCNGC	5 cut(s)	44, 47, 50, 249, 645
HaeIII	GGCC	2 cut(s)	61, 172
HapII	CCGG	3 cut(s)	58, 417, 542
HgaI	GACGC	1 cut(s)	870
Hin1I	GRCGYC	1 cut(s)	881
Hin1II	CATG	6 cut(s)	201, 306, 490, 626, 697, 805
HincII	GTYRAC	1 cut(s)	300
HindII	GTYRAC	1 cut(s)	300
HinfI	GANTC	4 cut(s)	323, 494, 550, 566
HpaII	CCGG	3 cut(s)	58, 417, 542
HphI	GGTGA	2 cut(s)	431, 605
Hpy166II	GTNNAC	4 cut(s)	235, 300, 628, 686
Hpy188I	TCNGA	2 cut(s)	472, 499
Hpy188III	TCNNGA	2 cut(s)	554, 725
Hpy8I	GTNNAC	4 cut(s)	235, 300, 628, 686
Hpy99I	CGWCG	1 cut(s)	527
HpyAV	CCTTC	2 cut(s)	238, 763
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4IV	ACGT	2 cut(s)	26, 764
HpyCH4V	TGCA	9 cut(s)	279, 377, 443, 507, 644, 697, 805, 842, 868
HpyF10VI	GCNNNNNNNGC	4 cut(s)	49, 58, 449, 458
HpyF3I	CTNAG	2 cut(s)	359, 496
HpySE526I	ACGT	2 cut(s)	26, 764
Hsp92I	GRCGYC	1 cut(s)	881
Hsp92II	CATG	6 cut(s)	201, 306, 490, 626, 697, 805
Kzo9I	GATC	2 cut(s)	467, 810
LguI	GCTCTTC	1 cut(s)	552
LmnI	GCTCC	3 cut(s)	143, 209, 517
LpnPI	CCDG	7 cut(s)	71, 171, 430, 453, 476, 555, 791
Lsp1109I	GCAGC	5 cut(s)	55, 58, 61, 235, 656
LweI	GCATC	2 cut(s)	494, 883
MaeI	CTAG	2 cut(s)	63, 213
MaeII	ACGT	2 cut(s)	26, 764
MaeIII	GTNAC	2 cut(s)	92, 593
MalI	GATC	2 cut(s)	469, 812
MboI	GATC	2 cut(s)	467, 810
MboII	GAAGA	5 cut(s)	63, 66, 569, 617, 705
MhlI	GDGCHC	1 cut(s)	564
MlyI	GAGTC	3 cut(s)	317, 488, 575
MnlI	CCTC	6 cut(s)	15, 183, 199, 441, 593, 730
MseI	TTAA	6 cut(s)	36, 120, 351, 761, 846, 860
MspA1I	CMGCKG	1 cut(s)	647
MspCI	CTTAAG	1 cut(s)	859
MspI	CCGG	3 cut(s)	58, 417, 542
Mva1269I	GAATGC	2 cut(s)	724, 781
MvnI	CGCG	1 cut(s)	743
MwoI	GCNNNNNNNGC	4 cut(s)	49, 58, 449, 458
NdeII	GATC	2 cut(s)	467, 810
NlaIII	CATG	6 cut(s)	201, 306, 490, 626, 697, 805
NmeAIII	GCCGAG	1 cut(s)	305
NmuCI	GTSAC	1 cut(s)	593
NspI	RCATGY	5 cut(s)	201, 490, 626, 697, 805
NspV	TTCGAA	1 cut(s)	716
PaeR7I	CTCGAG	1 cut(s)	563
PciI	ACATGT	1 cut(s)	197
PciSI	GCTCTTC	1 cut(s)	552
PcsI	WCGNNNNNNNCGW	1 cut(s)	561
PctI	GAATGC	2 cut(s)	724, 781
PfeI	GAWTC	1 cut(s)	550
PkrI	GCNGC	5 cut(s)	45, 48, 51, 250, 646
Ple19I	CGATCG	1 cut(s)	470
PleI	GAGTC	3 cut(s)	317, 488, 574
PpsI	GAGTC	3 cut(s)	317, 488, 574
PscI	ACATGT	1 cut(s)	197
Psp124BI	GAGCTC	1 cut(s)	564
Psp1406I	AACGTT	1 cut(s)	764
PspXI	VCTCGAGB	1 cut(s)	563
PvuI	CGATCG	1 cut(s)	470
PvuII	CAGCTG	1 cut(s)	647
RsaI	GTAC	2 cut(s)	148, 656
RsaNI	GTAC	2 cut(s)	147, 655
SacI	GAGCTC	1 cut(s)	564
SapI	GCTCTTC	1 cut(s)	552
SaqAI	TTAA	6 cut(s)	36, 120, 351, 761, 846, 860
SatI	GCNGC	5 cut(s)	44, 47, 50, 249, 645
Sau3AI	GATC	2 cut(s)	467, 810
SchI	GAGTC	3 cut(s)	317, 488, 575
SduI	GDGCHC	1 cut(s)	564
SfaNI	GCATC	2 cut(s)	494, 883
SfcI	CTRYAG	1 cut(s)	586
Sfr274I	CTCGAG	1 cut(s)	563
SfuI	TTCGAA	1 cut(s)	716
SlaI	CTCGAG	1 cut(s)	563
SmlI	CTYRAG	4 cut(s)	106, 252, 563, 859
SmoI	CTYRAG	4 cut(s)	106, 252, 563, 859
SsiI	CCGC	4 cut(s)	192, 363, 743, 854
SspMI	CTAG	2 cut(s)	63, 213
SstI	GAGCTC	1 cut(s)	564
TaaI	ACNGT	1 cut(s)	98
TaiI	ACGT	2 cut(s)	29, 767
TaqI	TCGA	7 cut(s)	243, 339, 466, 522, 564, 716, 726
TatI	WGTACW	1 cut(s)	146
TfiI	GAWTC	1 cut(s)	550
Tru1I	TTAA	6 cut(s)	36, 120, 351, 761, 846, 860
Tru9I	TTAA	6 cut(s)	36, 120, 351, 761, 846, 860
TseFI	GTSAC	1 cut(s)	593
TseI	GCWGC	5 cut(s)	43, 46, 49, 248, 644
Tsp45I	GTSAC	1 cut(s)	593
TspDTI	ATGAA	2 cut(s)	305, 332
TspGWI	ACGGA	3 cut(s)	130, 516, 672
Vha464I	CTTAAG	1 cut(s)	859
XapI	RAATTY	3 cut(s)	271, 283, 408
XceI	RCATGY	5 cut(s)	201, 490, 626, 697, 805
XhoI	CTCGAG	1 cut(s)	563
XmiI	GTMKAC	1 cut(s)	627
XspI	CTAG	2 cut(s)	63, 213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.