Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0015098

Physical Location & Seq

Genomic Coordinates Reverse (-)

16919044 .. 16920365

Gene Structure 1322 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g17740.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGACTGCACCATTTGTACTTCTATGCCAGTTATGCTAAGGCCTCCGAGGAATGTAATTTGCTCGACATGCTATGAGGGAGCTAGGAGCGTTATCTTCTTCATAAATAAACAGCTTCAAACTGCTCAAGGACCAGCTGATCAAAAACCAAATTTGTGTAAGACTCTTGAAAATGTGTCGAAATGGGTGCGTGACATGAAAGCAGAATCAGAAGAACTCAGTGAGAAGATTAGATTTCTAAGTGGATTTTCTGTTGCATTTAGGGATCAAATTCACACTGACATATTATTGCAACCTGGTGAAAGCGGCCCTCCAATTCCCGCCCATAAAGCCTTACTGGTGACTCTCATCTCTTTGTGTAGCAATGCAATAAGATCAGAAGTATTTAACAACATTCTAGACTCAGATGGGTGCAAAGCTCCAGCAACCGACACCGTAAAACTGCCTGAGCTGAACCATGAAGAGCTGGAGTCTCTATTGGAATTTCTTTACAACGGAGACTTGCCTGAAGATAAGATGAACAAACACATCTACTCCTTGTCCCTTGCAGCTGATAAGTACGGAATCTCGTACTTGCAGAAGCTATGTGAGTGTCATATGCTCAAGTCTATGAGCCCAGCCAATGCTCTTGATGTCTTAGAGGTTGCGGATGTTTGTTCCAGCCTAAAACTGAAGGAGAATGCGTTGGACTACATTGTTAAAAACATGCATGATATAGTTTTTTCTGCAAAATATGATAGTTTTGCACTTAAGAATCCGCATCTATGTGTACAGATTTCGAGGGCATCATTAATGGACGCCAAAAGAAATTCAGTTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB

Protein Analysis

274

Amino Acids

30.43

Weight (kDa)

5.83

Isoelectric Point (pI)

52.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56230
fragaria_vesca	FvH4_7g25521
malus_domestica	MD01G1161900.v1.1 MD07G1230000.v1.1
prunus_persica	Prupe.2G260000_v2.0.a1
pyrus_communis	pycom01g17740
rosa_chinensis	RchiOBHm_Chr1g0371521
rosa_laevigata	RLG00000026954
rosa_multiflora	Rmu_sc0000809.1_g000016
rosa_roxburghii	Rroxscaffold_4G00285590
rosa_rugosa	Rorug01G0365000
rosa_samantha	Rh1AG374900 Rh1BG338400 Rh1CG351700 Rh1DG369400
rosa_wichuraiana	Rw1G032980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	306, 321, 647, 758
AclWI	GGATC	1 cut(s)	273
AcsI	RAATTY	4 cut(s)	151, 270, 482, 808
AcuI	CTGAAG	2 cut(s)	528, 692
AcyI	GRCGYC	1 cut(s)	798
AfaI	GTAC	4 cut(s)	19, 560, 572, 771
AflII	CTTAAG	1 cut(s)	749
AgsI	TTSAA	2 cut(s)	119, 170
AjnI	CCWGG	1 cut(s)	295
AluBI	AGCT	8 cut(s)	83, 115, 137, 419, 451, 466, 551, 583
AluI	AGCT	8 cut(s)	83, 115, 137, 419, 451, 466, 551, 583
Alw26I	GTCTC	2 cut(s)	477, 492
AlwI	GGATC	1 cut(s)	273
AoxI	GGCC	2 cut(s)	41, 307
ApeKI	GCWGC	1 cut(s)	548
ApoI	RAATTY	4 cut(s)	151, 270, 482, 808
AseI	ATTAAT	1 cut(s)	791
AspS9I	GGNCC	2 cut(s)	131, 308
AsuHPI	GGTGA	2 cut(s)	311, 352
AvaII	GGWCC	1 cut(s)	131
BanII	GRGCYC	1 cut(s)	617
BbvI	GCAGC	1 cut(s)	560
BccI	CCATC	1 cut(s)	401
BcgI	CGANNNNNNTGC	2 cut(s)	169, 203
BciT130I	CCWGG	1 cut(s)	297
BclI	TGATCA	1 cut(s)	139
BcoDI	GTCTC	2 cut(s)	477, 492
BfaI	CTAG	2 cut(s)	84, 398
BfrI	CTTAAG	1 cut(s)	749
BisI	GCNGC	2 cut(s)	307, 549
BlsI	GCNGC	2 cut(s)	308, 550
Bme1390I	CCNGG	1 cut(s)	297
Bme18I	GGWCC	1 cut(s)	131
BmgT120I	GGNCC	2 cut(s)	131, 308
BmrFI	CCNGG	1 cut(s)	297
BmsI	GCATC	2 cut(s)	769, 794
BpmI	CTGGAG	2 cut(s)	405, 488
Bpu10I	CCTNAGC	2 cut(s)	38, 447
BpuEI	CTTGAG	2 cut(s)	111, 587
BsaHI	GRCGYC	1 cut(s)	798
BsaJI	CCNNGG	1 cut(s)	47
BsaXI	ACNNNNNCTCC	4 cut(s)	518, 548, 668, 698
Bse1I	ACTGG	2 cut(s)	29, 342
Bse3DI	GCAATG	1 cut(s)	370
BseBI	CCWGG	1 cut(s)	297
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	1 cut(s)	655
BseMI	GCAATG	1 cut(s)	370
BseMII	CTCAG	3 cut(s)	232, 417, 438
BseNI	ACTGG	2 cut(s)	29, 342
BseXI	GCAGC	1 cut(s)	560
BseYI	CCCAGC	1 cut(s)	616
BshFI	GGCC	2 cut(s)	43, 309
BslFI	GGGAC	1 cut(s)	526
BsmAI	GTCTC	2 cut(s)	477, 492
BsmFI	GGGAC	1 cut(s)	526
BsmI	GAATGC	1 cut(s)	685
BsnI	GGCC	2 cut(s)	43, 309
Bsp1286I	GDGCHC	1 cut(s)	617
Bsp1407I	TGTACA	1 cut(s)	769
Bsp143I	GATC	3 cut(s)	139, 265, 374
BspACI	CCGC	4 cut(s)	306, 321, 647, 758
BspANI	GGCC	2 cut(s)	43, 309
BspCNI	CTCAG	3 cut(s)	231, 416, 439
BspPI	GGATC	1 cut(s)	273
BspQI	GCTCTTC	1 cut(s)	456
BspTI	CTTAAG	1 cut(s)	749
BsrDI	GCAATG	1 cut(s)	370
BsrGI	TGTACA	1 cut(s)	769
BsrI	ACTGG	2 cut(s)	29, 342
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	3 cut(s)	139, 265, 374
BssNI	GRCGYC	1 cut(s)	798
Bst2UI	CCWGG	1 cut(s)	297
Bst4CI	ACNGT	1 cut(s)	436
Bst6I	CTCTTC	1 cut(s)	456
BstACI	GRCGYC	1 cut(s)	798
BstAFI	CTTAAG	1 cut(s)	749
BstAUI	TGTACA	1 cut(s)	769
BstDEI	CTNAG	6 cut(s)	38, 218, 239, 403, 447, 637
BstF5I	GGATG	1 cut(s)	655
BstKTI	GATC	3 cut(s)	142, 268, 377
BstMAI	GTCTC	2 cut(s)	477, 492
BstMBI	GATC	3 cut(s)	139, 265, 374
BstMWI	GCNNNNNNNGC	3 cut(s)	34, 69, 329
BstNI	CCWGG	1 cut(s)	297
BstNSI	RCATGY	2 cut(s)	72, 709
BstSCI	CCNGG	1 cut(s)	295
BstV1I	GCAGC	1 cut(s)	560
BsuRI	GGCC	2 cut(s)	43, 309
BtsCI	GGATG	1 cut(s)	655
BtsIMutI	CAGTG	2 cut(s)	226, 276
Cfr13I	GGNCC	2 cut(s)	131, 308
CseI	GACGC	1 cut(s)	806
CsiI	ACCWGGT	1 cut(s)	295
Csp6I	GTAC	4 cut(s)	18, 559, 571, 770
CviAII	CATG	5 cut(s)	69, 196, 458, 706, 710
CviQI	GTAC	4 cut(s)	18, 559, 571, 770
DdeI	CTNAG	6 cut(s)	38, 218, 239, 403, 447, 637
DpnI	GATC	3 cut(s)	141, 267, 376
DpnII	GATC	3 cut(s)	139, 265, 374
Eam1104I	CTCTTC	1 cut(s)	456
EarI	CTCTTC	1 cut(s)	456
Eco147I	AGGCCT	1 cut(s)	43
Eco24I	GRGCYC	1 cut(s)	617
Eco47I	GGWCC	1 cut(s)	131
Eco57I	CTGAAG	2 cut(s)	528, 692
EcoRII	CCWGG	1 cut(s)	295
EcoT22I	ATGCAT	1 cut(s)	711
EcoT38I	GRGCYC	1 cut(s)	617
FaeI	CATG	5 cut(s)	72, 199, 461, 709, 713
FaqI	GGGAC	1 cut(s)	526
FatI	CATG	5 cut(s)	68, 195, 457, 705, 709
FauI	CCCGC	1 cut(s)	328
FauNDI	CATATG	1 cut(s)	597
FbaI	TGATCA	1 cut(s)	139
Fnu4HI	GCNGC	2 cut(s)	307, 549
FokI	GGATG	1 cut(s)	662
FriOI	GRGCYC	1 cut(s)	617
Fsp4HI	GCNGC	2 cut(s)	307, 549
FspBI	CTAG	2 cut(s)	84, 398
GluI	GCNGC	2 cut(s)	307, 549
GsaI	CCCAGC	1 cut(s)	620
GsuI	CTGGAG	2 cut(s)	405, 488
HaeIII	GGCC	2 cut(s)	43, 309
HgaI	GACGC	1 cut(s)	806
Hin1I	GRCGYC	1 cut(s)	798
Hin1II	CATG	5 cut(s)	72, 199, 461, 709, 713
HinfI	GANTC	7 cut(s)	163, 206, 343, 401, 470, 564, 754
HphI	GGTGA	2 cut(s)	311, 352
Hpy166II	GTNNAC	1 cut(s)	770
Hpy188I	TCNGA	4 cut(s)	48, 211, 379, 406
Hpy188III	TCNNGA	3 cut(s)	167, 398, 629
Hpy8I	GTNNAC	1 cut(s)	770
HpyAV	CCTTC	1 cut(s)	667
HpyCH4III	ACNGT	1 cut(s)	436
HpyF10VI	GCNNNNNNNGC	3 cut(s)	34, 69, 329
HpyF3I	CTNAG	6 cut(s)	38, 218, 239, 403, 447, 637
Hsp92I	GRCGYC	1 cut(s)	798
Hsp92II	CATG	5 cut(s)	72, 199, 461, 709, 713
Ksp22I	TGATCA	1 cut(s)	139
Kzo9I	GATC	3 cut(s)	139, 265, 374
LguI	GCTCTTC	1 cut(s)	456
LmnI	GCTCC	3 cut(s)	80, 87, 424
Lsp1109I	GCAGC	1 cut(s)	560
LweI	GCATC	2 cut(s)	769, 794
MabI	ACCWGGT	1 cut(s)	295
MaeI	CTAG	2 cut(s)	84, 398
MaeIII	GTNAC	2 cut(s)	191, 340
MalI	GATC	3 cut(s)	141, 267, 376
MboI	GATC	3 cut(s)	139, 265, 374
MboII	GAAGA	6 cut(s)	88, 91, 224, 238, 473, 521
MhlI	GDGCHC	1 cut(s)	617
MluCI	AATT	6 cut(s)	57, 151, 270, 315, 482, 808
MlyI	GAGTC	4 cut(s)	157, 337, 395, 479
MmeI	TCCRAC	1 cut(s)	666
MnlI	CCTC	6 cut(s)	42, 54, 70, 321, 634, 774
Mph1103I	ATGCAT	1 cut(s)	711
MseI	TTAA	4 cut(s)	387, 699, 750, 791
MslI	CAYNNNNRTG	1 cut(s)	765
MspA1I	CMGCKG	2 cut(s)	137, 551
MspCI	CTTAAG	1 cut(s)	749
MspR9I	CCNGG	1 cut(s)	297
Mva1269I	GAATGC	1 cut(s)	685
MvaI	CCWGG	1 cut(s)	297
MwoI	GCNNNNNNNGC	3 cut(s)	34, 69, 329
NdeI	CATATG	1 cut(s)	597
NdeII	GATC	3 cut(s)	139, 265, 374
NlaIII	CATG	5 cut(s)	72, 199, 461, 709, 713
NmuCI	GTSAC	2 cut(s)	191, 340
NsiI	ATGCAT	1 cut(s)	711
NspI	RCATGY	2 cut(s)	72, 709
PceI	AGGCCT	1 cut(s)	43
PciSI	GCTCTTC	1 cut(s)	456
PctI	GAATGC	1 cut(s)	685
PfeI	GAWTC	3 cut(s)	206, 564, 754
PkrI	GCNGC	2 cut(s)	308, 550
PleI	GAGTC	4 cut(s)	157, 337, 395, 478
PpsI	GAGTC	4 cut(s)	157, 337, 395, 478
PshBI	ATTAAT	1 cut(s)	791
Psp6I	CCWGG	1 cut(s)	295
PspFI	CCCAGC	1 cut(s)	616
PspGI	CCWGG	1 cut(s)	295
PspPI	GGNCC	2 cut(s)	131, 308
PvuII	CAGCTG	2 cut(s)	137, 551
RsaI	GTAC	4 cut(s)	19, 560, 572, 771
RsaNI	GTAC	4 cut(s)	18, 559, 571, 770
RseI	CAYNNNNRTG	1 cut(s)	765
SapI	GCTCTTC	1 cut(s)	456
SaqAI	TTAA	4 cut(s)	387, 699, 750, 791
SatI	GCNGC	2 cut(s)	307, 549
Sau3AI	GATC	3 cut(s)	139, 265, 374
Sau96I	GGNCC	2 cut(s)	131, 308
SchI	GAGTC	4 cut(s)	157, 337, 395, 479
ScrFI	CCNGG	1 cut(s)	297
SduI	GDGCHC	1 cut(s)	617
SexAI	ACCWGGT	1 cut(s)	295
SfaNI	GCATC	2 cut(s)	769, 794
SinI	GGWCC	1 cut(s)	131
SmiMI	CAYNNNNRTG	1 cut(s)	765
SmlI	CTYRAG	3 cut(s)	126, 602, 749
SmoI	CTYRAG	3 cut(s)	126, 602, 749
Sse9I	AATT	6 cut(s)	57, 151, 270, 315, 482, 808
SseBI	AGGCCT	1 cut(s)	43
SsiI	CCGC	4 cut(s)	306, 321, 647, 758
SspMI	CTAG	2 cut(s)	84, 398
StuI	AGGCCT	1 cut(s)	43
StyD4I	CCNGG	1 cut(s)	295
TaaI	ACNGT	1 cut(s)	436
TaqI	TCGA	3 cut(s)	65, 179, 779
TasI	AATT	6 cut(s)	57, 151, 270, 315, 482, 808
TatI	WGTACW	2 cut(s)	17, 769
TauI	GCSGC	1 cut(s)	309
TfiI	GAWTC	3 cut(s)	206, 564, 754
Tru1I	TTAA	4 cut(s)	387, 699, 750, 791
Tru9I	TTAA	4 cut(s)	387, 699, 750, 791
TscAI	CASTG	2 cut(s)	226, 283
TseFI	GTSAC	2 cut(s)	191, 340
TseI	GCWGC	1 cut(s)	548
Tsp45I	GTSAC	2 cut(s)	191, 340
TspDTI	ATGAA	4 cut(s)	91, 212, 474, 533
TspGWI	ACGGA	2 cut(s)	510, 576
TspRI	CASTG	2 cut(s)	226, 283
Vha464I	CTTAAG	1 cut(s)	749
VpaK11BI	GGWCC	1 cut(s)	131
VspI	ATTAAT	1 cut(s)	791
XapI	RAATTY	4 cut(s)	151, 270, 482, 808
XbaI	TCTAGA	1 cut(s)	397
XceI	RCATGY	2 cut(s)	72, 709
XspI	CTAG	2 cut(s)	84, 398
Zsp2I	ATGCAT	1 cut(s)	711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.