Rorug01G0365000

BTB POZ domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0015098
Physical Location & Seq
Forward (+)
47990814 .. 47992252
1439 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0365000.1

Sequence Viewer

Length: 522 bp
ATGCTTTCCTTCAAAATCACTCGGGTTATTTCTTTGATATTAAGGATCCTGAGCGCCATTGCGCTCTTTACGTCCATGGTCATCCTTGGCATCAATAATCTCGAACTGATTCCTTACAAGAACGGAAAGCTTGGAAAACCCTACACCTCCCACTTTTATGACGAAGTAGGGTTCCGATACGTTTTTGCTACGGCTTTTATTGGGACTGCATATTCAATCGGCCAGGGTGTATGTACAATTATCCATATGGCGAAAGGAAATCAAGTAGGGCATGTCACGTTTGATTTCTATGCTGAGGAGGTTATGTCAAATTTTTTAGCTTCAGGAGCTGTCCCAGGATTTATCACGGCTGCACAGTACTTGAAAATGTGGGATGAAATTAATTCGGGAATAGACCATCGCTTTATCAATATGACATATATAGCATCTGGACTTGTCATCTTTGCCTTCCTCAGCAGTTTCGTAATATCAGTCTTCTCTTCATATGCACTCGGTAGAAATGATGATGATGAGCTTTTGTAA

Protein Analysis

173

Amino Acids

19.2

Weight (kDa)

6.04

Isoelectric Point (pI)

24.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CASP_dom PF04535 8 - 151 9.9e-12 Casparian strip membrane protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015098)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56230
fragaria_vesca FvH4_7g25521
malus_domestica MD01G1161900.v1.1 MD07G1230000.v1.1
prunus_persica Prupe.2G260000_v2.0.a1
pyrus_communis pycom01g17740
rosa_chinensis RchiOBHm_Chr1g0371521
rosa_laevigata RLG00000026954
rosa_multiflora Rmu_sc0000809.1_g000016
rosa_roxburghii Rroxscaffold_4G00285590
rosa_rugosa Rorug01G0365000
rosa_samantha Rh1AG374900 Rh1BG338400 Rh1CG351700 Rh1DG369400
rosa_wichuraiana Rw1G032980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 40, 53
AcoI YGGCCR 1 cut(s) 220
AcsI RAATTY 1 cut(s) 310
AcuI CTGAAG 1 cut(s) 306
AfaI GTAC 2 cut(s) 235, 359
AgsI TTSAA 3 cut(s) 13, 216, 364
AjnI CCWGG 2 cut(s) 222, 334
AluBI AGCT 4 cut(s) 130, 320, 329, 514
AluI AGCT 4 cut(s) 130, 320, 329, 514
AlwI GGATC 2 cut(s) 40, 53
AlwNI CAGNNNCTG 1 cut(s) 329
Ama87I CYCGRG 1 cut(s) 21
AoxI GGCC 1 cut(s) 220
ApeKI GCWGC 1 cut(s) 350
ApoI RAATTY 1 cut(s) 310
AseI ATTAAT 1 cut(s) 381
Asp700I GAANNNNTTC 1 cut(s) 108
AspLEI GCGC 2 cut(s) 56, 64
AvaI CYCGRG 1 cut(s) 21
BamHI GGATCC 1 cut(s) 45
BbsI GAAGAC 1 cut(s) 466
BbvCI CCTCAGC 2 cut(s) 294, 452
BbvI GCAGC 1 cut(s) 337
BccI CCATC 1 cut(s) 405
BceAI ACGGC 2 cut(s) 207, 363
BciT130I CCWGG 2 cut(s) 224, 336
BfoI RGCGCY 1 cut(s) 57
BisI GCNGC 1 cut(s) 351
BlsI GCNGC 1 cut(s) 352
BmcAI AGTACT 1 cut(s) 359
Bme1390I CCNGG 2 cut(s) 224, 336
BmeT110I CYCGRG 1 cut(s) 21
BmiI GGNNCC 2 cut(s) 47, 173
BmrFI CCNGG 2 cut(s) 224, 336
BmsI GCATC 2 cut(s) 99, 434
BpiI GAAGAC 1 cut(s) 466
Bpu10I CCTNAGC 3 cut(s) 50, 294, 452
BsaJI CCNNGG 4 cut(s) 75, 85, 223, 334
BsaXI ACNNNNNCTCC 2 cut(s) 290, 320
Bse3DI GCAATG 1 cut(s) 57
BseBI CCWGG 2 cut(s) 224, 336
BseDI CCNNGG 4 cut(s) 75, 85, 223, 334
BseGI GGATG 2 cut(s) 81, 379
BseMI GCAATG 1 cut(s) 57
BseMII CTCAG 3 cut(s) 41, 285, 466
BseRI GAGGAG 1 cut(s) 311
BseXI GCAGC 1 cut(s) 337
BsgI GTGCAG 1 cut(s) 336
BshFI GGCC 1 cut(s) 222
BsiHKCI CYCGRG 1 cut(s) 21
BslFI GGGAC 2 cut(s) 217, 317
BsmFI GGGAC 2 cut(s) 217, 317
BsnI GGCC 1 cut(s) 222
BsoBI CYCGRG 1 cut(s) 21
Bsp1407I TGTACA 1 cut(s) 233
Bsp143I GATC 1 cut(s) 45
Bsp19I CCATGG 1 cut(s) 75
BspANI GGCC 1 cut(s) 222
BspCNI CTCAG 3 cut(s) 42, 286, 465
BspLI GGNNCC 2 cut(s) 47, 173
BspPI GGATC 2 cut(s) 40, 53
BsrDI GCAATG 1 cut(s) 57
BsrGI TGTACA 1 cut(s) 233
BssECI CCNNGG 4 cut(s) 75, 85, 223, 334
BssMI GATC 1 cut(s) 45
BssT1I CCWWGG 2 cut(s) 75, 85
Bst2UI CCWGG 2 cut(s) 224, 336
Bst4CI ACNGT 1 cut(s) 357
Bst6I CTCTTC 1 cut(s) 484
BstAUI TGTACA 1 cut(s) 233
BstDEI CTNAG 3 cut(s) 50, 294, 452
BstDSI CCRYGG 1 cut(s) 75
BstF5I GGATG 2 cut(s) 81, 379
BstH2I RGCGCY 1 cut(s) 57
BstHHI GCGC 2 cut(s) 56, 64
BstKTI GATC 1 cut(s) 48
BstMBI GATC 1 cut(s) 45
BstMWI GCNNNNNNNGC 1 cut(s) 326
BstNI CCWGG 2 cut(s) 224, 336
BstNSI RCATGY 1 cut(s) 275
BstSCI CCNGG 2 cut(s) 222, 334
BstV1I GCAGC 1 cut(s) 337
BstV2I GAAGAC 1 cut(s) 466
BstX2I RGATCY 1 cut(s) 45
BstYI RGATCY 1 cut(s) 45
BsuRI GGCC 1 cut(s) 222
BtgI CCRYGG 1 cut(s) 75
BtgZI GCGATG 1 cut(s) 383
BtsCI GGATG 2 cut(s) 81, 379
CaiI CAGNNNCTG 1 cut(s) 329
CfoI GCGC 2 cut(s) 56, 64
Csp6I GTAC 2 cut(s) 234, 358
CviAII CATG 2 cut(s) 76, 272
CviJI RGCY 7 cut(s) 130, 194, 222, 320, 329, 350, 514
CviKI_1 RGCY 7 cut(s) 130, 194, 222, 320, 329, 350, 514
CviQI GTAC 2 cut(s) 234, 358
DdeI CTNAG 3 cut(s) 50, 294, 452
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
EaeI YGGCCR 1 cut(s) 220
Eam1104I CTCTTC 1 cut(s) 484
EarI CTCTTC 1 cut(s) 484
Eco130I CCWWGG 2 cut(s) 75, 85
Eco57I CTGAAG 1 cut(s) 306
Eco88I CYCGRG 1 cut(s) 21
EcoRII CCWGG 2 cut(s) 222, 334
EcoT14I CCWWGG 2 cut(s) 75, 85
ErhI CCWWGG 2 cut(s) 75, 85
FaeI CATG 2 cut(s) 79, 275
FaqI GGGAC 2 cut(s) 217, 317
FatI CATG 2 cut(s) 75, 271
FauNDI CATATG 2 cut(s) 246, 484
Fnu4HI GCNGC 1 cut(s) 351
FokI GGATG 2 cut(s) 68, 386
Fsp4HI GCNGC 1 cut(s) 351
GlaI GCGC 2 cut(s) 55, 63
GluI GCNGC 1 cut(s) 351
HaeII RGCGCY 1 cut(s) 57
HaeIII GGCC 1 cut(s) 222
HhaI GCGC 2 cut(s) 56, 64
Hin1II CATG 2 cut(s) 79, 275
Hin6I GCGC 2 cut(s) 54, 62
HinP1I GCGC 2 cut(s) 54, 62
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 1 cut(s) 109
Hpy188I TCNGA 1 cut(s) 176
Hpy188III TCNNGA 5 cut(s) 49, 101, 324, 387, 429
HpyAV CCTTC 2 cut(s) 19, 457
HpyCH4III ACNGT 1 cut(s) 357
HpyCH4IV ACGT 3 cut(s) 71, 180, 278
HpyCH4V TGCA 3 cut(s) 209, 353, 488
HpyF10VI GCNNNNNNNGC 1 cut(s) 326
HpyF3I CTNAG 3 cut(s) 50, 294, 452
HpySE526I ACGT 3 cut(s) 71, 180, 278
Hsp92II CATG 2 cut(s) 79, 275
HspAI GCGC 2 cut(s) 54, 62
Kzo9I GATC 1 cut(s) 45
LmnI GCTCC 1 cut(s) 326
LpnPI CCDG 7 cut(s) 62, 209, 236, 309, 321, 348, 414
Lsp1109I GCAGC 1 cut(s) 337
LweI GCATC 2 cut(s) 99, 434
MaeII ACGT 3 cut(s) 71, 180, 278
MaeIII GTNAC 1 cut(s) 274
MalI GATC 1 cut(s) 47
MboI GATC 1 cut(s) 45
MboII GAAGA 2 cut(s) 466, 471
MflI RGATCY 1 cut(s) 45
MluCI AATT 4 cut(s) 237, 310, 378, 382
MnlI CCTC 4 cut(s) 157, 289, 292, 461
MroXI GAANNNNTTC 1 cut(s) 108
MseI TTAA 2 cut(s) 41, 381
MslI CAYNNNNRTG 1 cut(s) 156
MspR9I CCNGG 2 cut(s) 224, 336
MvaI CCWGG 2 cut(s) 224, 336
MwoI GCNNNNNNNGC 1 cut(s) 326
NcoI CCATGG 1 cut(s) 75
NdeI CATATG 2 cut(s) 246, 484
NdeII GATC 1 cut(s) 45
NlaIII CATG 2 cut(s) 79, 275
NlaIV GGNNCC 2 cut(s) 47, 173
NmuCI GTSAC 1 cut(s) 274
NspI RCATGY 1 cut(s) 275
PdmI GAANNNNTTC 1 cut(s) 108
PfeI GAWTC 1 cut(s) 109
PkrI GCNGC 1 cut(s) 352
PshBI ATTAAT 1 cut(s) 381
Psp6I CCWGG 2 cut(s) 222, 334
PspGI CCWGG 2 cut(s) 222, 334
PspN4I GGNNCC 2 cut(s) 47, 173
PstNI CAGNNNCTG 1 cut(s) 329
PsuI RGATCY 1 cut(s) 45
RsaI GTAC 2 cut(s) 235, 359
RsaNI GTAC 2 cut(s) 234, 358
RseI CAYNNNNRTG 1 cut(s) 156
SaqAI TTAA 2 cut(s) 41, 381
SatI GCNGC 1 cut(s) 351
Sau3AI GATC 1 cut(s) 45
ScaI AGTACT 1 cut(s) 359
ScrFI CCNGG 2 cut(s) 224, 336
SetI ASST 9 cut(s) 74, 132, 149, 183, 281, 303, 322, 331, 516
SfaNI GCATC 2 cut(s) 99, 434
SmiMI CAYNNNNRTG 1 cut(s) 156
Sse9I AATT 4 cut(s) 237, 310, 378, 382
StyD4I CCNGG 2 cut(s) 222, 334
StyI CCWWGG 2 cut(s) 75, 85
TaaI ACNGT 1 cut(s) 357
TaiI ACGT 3 cut(s) 74, 183, 281
TaqI TCGA 1 cut(s) 102
TasI AATT 4 cut(s) 237, 310, 378, 382
TatI WGTACW 2 cut(s) 233, 357
TfiI GAWTC 1 cut(s) 109
Tru1I TTAA 2 cut(s) 41, 381
Tru9I TTAA 2 cut(s) 41, 381
TseFI GTSAC 1 cut(s) 274
TseI GCWGC 1 cut(s) 350
Tsp45I GTSAC 1 cut(s) 274
TspDTI ATGAA 2 cut(s) 390, 471
TspGWI ACGGA 1 cut(s) 138
VspI ATTAAT 1 cut(s) 381
XapI RAATTY 1 cut(s) 310
XceI RCATGY 1 cut(s) 275
XmnI GAANNNNTTC 1 cut(s) 108
ZrmI AGTACT 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.