Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0015098

Physical Location & Seq

Genomic Coordinates Reverse (-)

26997991 .. 27000178

Gene Structure 2188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G260000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGACTGTTCTATTTGTACTTCAATGCCGGCTATATTGAGGCCTCCAAGGAATACAATATGCTTGACATGCTACGAGGGAGCCCGTAGCGTTATCTCCTTCATAAACAAGCTTGAAAGTGCTCAAGGATCAGCTGAGAAGAAAGCAAATTTGTGTAAGACTCTGGAGAATGTGTCAAAATGGGTGCATGATAGGAAGGATGCATCAGAGGAACTCAATGAGAAGATTAAATTCCTAAGTGGATTTGTTGTTGCATTTAGAGATCAAATTCACACAGACATTCAACTCCACCCTGGTGATAATGGGCCTCCAATACCTGCACATAGAGCCTTATTGGCAATACGATCGGAAATCTTCAACAACATGCTAGACTCAGACGGGTGCAAAGCTCCACCAAACGACGCCGTAACATTGCCAGAGTTGAACCATGAAGAGCTTGAATCTCTCTTGGAGTTCCTGTACAATGGGGACTTGCATGAAGAAAAGATGAACAAGCATGTGTACTCCTTGTTCCTTGCAGCAGATAAATACGGAATCTCGTACCTACAGAAGCTTTGTGAGCGCCATATGCTCGAGTCTCTGAGCACAGCCAATGCTCTTGATGTTTTAGAGGTTGCAGATCTTTGTTCGTGCCTGACTTTGAAGAACAATGCCTTGGACTTCATTGTCAAAAACATGCACGACATAGTTTTCTCAGCTAAGTATGATGCATTTGCACTTAAGAATCCTCATCTTTGTGTACAGATTTCAAGGGCATCATTGATGGATGCCAAAAGAAATTCAGTTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB

Protein Analysis

264

Amino Acids

29.42

Weight (kDa)

5.8

Isoelectric Point (pI)

37.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56230
fragaria_vesca	FvH4_7g25521
malus_domestica	MD01G1161900.v1.1 MD07G1230000.v1.1
prunus_persica	Prupe.2G260000_v2.0.a1
pyrus_communis	pycom01g17740
rosa_chinensis	RchiOBHm_Chr1g0371521
rosa_laevigata	RLG00000026954
rosa_multiflora	Rmu_sc0000809.1_g000016
rosa_roxburghii	Rroxscaffold_4G00285590
rosa_rugosa	Rorug01G0365000
rosa_samantha	Rh1AG374900 Rh1BG338400 Rh1CG351700 Rh1DG369400
rosa_wichuraiana	Rw1G032980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	665
Acc36I	ACCTGC	1 cut(s)	325
AclWI	GGATC	1 cut(s)	136
AcsI	RAATTY	4 cut(s)	148, 230, 267, 778
AcyI	GRCGYC	1 cut(s)	402
AfaI	GTAC	5 cut(s)	19, 461, 503, 542, 741
AflII	CTTAAG	1 cut(s)	719
AgsI	TTSAA	8 cut(s)	24, 116, 284, 358, 424, 440, 643, 750
AjnI	CCWGG	1 cut(s)	292
AjuI	GAANNNNNNNTTGG	2 cut(s)	638, 670
AleI	CACNNNNGTG	1 cut(s)	294
AluBI	AGCT	6 cut(s)	112, 134, 389, 436, 553, 698
AluI	AGCT	6 cut(s)	112, 134, 389, 436, 553, 698
Alw21I	GWGCWC	2 cut(s)	124, 587
Alw26I	GTCTC	1 cut(s)	582
AlwI	GGATC	1 cut(s)	136
Ama87I	CYCGRG	1 cut(s)	572
AoxI	GGCC	2 cut(s)	41, 305
ApeKI	GCWGC	1 cut(s)	518
ApoI	RAATTY	4 cut(s)	148, 230, 267, 778
AspLEI	GCGC	1 cut(s)	564
AspS9I	GGNCC	1 cut(s)	305
AsuHPI	GGTGA	1 cut(s)	308
AvaI	CYCGRG	1 cut(s)	572
BanII	GRGCYC	1 cut(s)	85
Bbv12I	GWGCWC	2 cut(s)	124, 587
BbvI	GCAGC	1 cut(s)	530
BccI	CCATC	1 cut(s)	757
BceAI	ACGGC	1 cut(s)	389
BcgI	CGANNNNNNTGC	2 cut(s)	327, 361
BciT130I	CCWGG	1 cut(s)	294
BcoDI	GTCTC	1 cut(s)	582
BfaI	CTAG	2 cut(s)	368, 790
BfmI	CTRYAG	1 cut(s)	545
BfoI	RGCGCY	1 cut(s)	565
BfrI	CTTAAG	1 cut(s)	719
BfuAI	ACCTGC	1 cut(s)	325
BglI	GCCNNNNNGGC	1 cut(s)	335
BglII	AGATCT	1 cut(s)	619
BisI	GCNGC	1 cut(s)	519
BlsI	GCNGC	1 cut(s)	520
Bme1390I	CCNGG	1 cut(s)	294
BmeT110I	CYCGRG	1 cut(s)	572
BmgT120I	GGNCC	1 cut(s)	305
BmiI	GGNNCC	1 cut(s)	82
BmrFI	CCNGG	1 cut(s)	294
BmsI	GCATC	5 cut(s)	190, 212, 697, 757, 764
BpmI	CTGGAG	1 cut(s)	185
BpuEI	CTTGAG	1 cut(s)	108
BsaHI	GRCGYC	1 cut(s)	402
BsaJI	CCNNGG	3 cut(s)	47, 292, 654
BsaXI	ACNNNNNCTCC	4 cut(s)	158, 188, 443, 473
Bse118I	RCCGGY	1 cut(s)	28
Bse3DI	GCAATG	1 cut(s)	410
BseBI	CCWGG	1 cut(s)	294
BseDI	CCNNGG	3 cut(s)	47, 292, 654
BseGI	GGATG	2 cut(s)	205, 772
BseMI	GCAATG	1 cut(s)	410
BseMII	CTCAG	4 cut(s)	126, 387, 572, 708
BseXI	GCAGC	1 cut(s)	530
BsgI	GTGCAG	1 cut(s)	303
Bsh1285I	CGRYCG	1 cut(s)	347
BshFI	GGCC	2 cut(s)	43, 307
BsiEI	CGRYCG	1 cut(s)	347
BsiHKAI	GWGCWC	2 cut(s)	124, 587
BsiHKCI	CYCGRG	1 cut(s)	572
BsiSI	CCGG	1 cut(s)	29
BslFI	GGGAC	1 cut(s)	482
BsmAI	GTCTC	1 cut(s)	582
BsmFI	GGGAC	1 cut(s)	482
BsnI	GGCC	2 cut(s)	43, 307
BsoBI	CYCGRG	1 cut(s)	572
Bsp1286I	GDGCHC	3 cut(s)	85, 124, 587
Bsp1407I	TGTACA	2 cut(s)	459, 739
Bsp143I	GATC	4 cut(s)	128, 262, 344, 619
BspANI	GGCC	2 cut(s)	43, 307
BspCNI	CTCAG	4 cut(s)	127, 386, 573, 707
BspLI	GGNNCC	1 cut(s)	82
BspMI	ACCTGC	1 cut(s)	325
BspPI	GGATC	1 cut(s)	136
BspQI	GCTCTTC	1 cut(s)	426
BspTI	CTTAAG	1 cut(s)	719
BsrDI	GCAATG	1 cut(s)	410
BsrFI	RCCGGY	1 cut(s)	28
BsrGI	TGTACA	2 cut(s)	459, 739
BssAI	RCCGGY	1 cut(s)	28
BssECI	CCNNGG	3 cut(s)	47, 292, 654
BssMI	GATC	4 cut(s)	128, 262, 344, 619
BssNI	GRCGYC	1 cut(s)	402
BssT1I	CCWWGG	2 cut(s)	47, 654
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	1 cut(s)	8
Bst6I	CTCTTC	1 cut(s)	426
BstACI	GRCGYC	1 cut(s)	402
BstAFI	CTTAAG	1 cut(s)	719
BstAUI	TGTACA	2 cut(s)	459, 739
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	6 cut(s)	135, 236, 373, 581, 694, 699
BstF5I	GGATG	2 cut(s)	205, 772
BstH2I	RGCGCY	1 cut(s)	565
BstHHI	GCGC	1 cut(s)	564
BstKTI	GATC	4 cut(s)	131, 265, 347, 622
BstMAI	GTCTC	1 cut(s)	582
BstMBI	GATC	4 cut(s)	128, 262, 344, 619
BstMCI	CGRYCG	1 cut(s)	347
BstMWI	GCNNNNNNNGC	5 cut(s)	69, 326, 335, 559, 568
BstNI	CCWGG	1 cut(s)	294
BstNSI	RCATGY	4 cut(s)	72, 367, 500, 679
BstSCI	CCNGG	1 cut(s)	292
BstSFI	CTRYAG	1 cut(s)	545
BstV1I	GCAGC	1 cut(s)	530
BstX2I	RGATCY	1 cut(s)	619
BstYI	RGATCY	1 cut(s)	619
BsuRI	GGCC	2 cut(s)	43, 307
BtsCI	GGATG	2 cut(s)	205, 772
BveI	ACCTGC	1 cut(s)	325
Cac8I	GCNNGC	1 cut(s)	30
CfoI	GCGC	1 cut(s)	564
Cfr10I	RCCGGY	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	305
CseI	GACGC	1 cut(s)	410
Csp6I	GTAC	5 cut(s)	18, 460, 502, 541, 740
CviAII	CATG	7 cut(s)	69, 188, 364, 428, 476, 497, 676
CviQI	GTAC	5 cut(s)	18, 460, 502, 541, 740
DdeI	CTNAG	6 cut(s)	135, 236, 373, 581, 694, 699
DpnI	GATC	4 cut(s)	130, 264, 346, 621
DpnII	GATC	4 cut(s)	128, 262, 344, 619
DrdI	GACNNNNNNGTC	1 cut(s)	665
DseDI	GACNNNNNNGTC	1 cut(s)	665
Eam1104I	CTCTTC	1 cut(s)	426
EarI	CTCTTC	1 cut(s)	426
Eco130I	CCWWGG	2 cut(s)	47, 654
Eco147I	AGGCCT	1 cut(s)	43
Eco24I	GRGCYC	1 cut(s)	85
Eco88I	CYCGRG	1 cut(s)	572
EcoRII	CCWGG	1 cut(s)	292
EcoT14I	CCWWGG	2 cut(s)	47, 654
EcoT22I	ATGCAT	2 cut(s)	205, 712
EcoT38I	GRGCYC	1 cut(s)	85
ErhI	CCWWGG	2 cut(s)	47, 654
FaeI	CATG	7 cut(s)	72, 191, 367, 431, 479, 500, 679
FaqI	GGGAC	1 cut(s)	482
FatI	CATG	7 cut(s)	68, 187, 363, 427, 475, 496, 675
FauNDI	CATATG	1 cut(s)	567
Fnu4HI	GCNGC	1 cut(s)	519
FokI	GGATG	2 cut(s)	212, 779
FriOI	GRGCYC	1 cut(s)	85
Fsp4HI	GCNGC	1 cut(s)	519
FspBI	CTAG	2 cut(s)	368, 790
GlaI	GCGC	1 cut(s)	563
GluI	GCNGC	1 cut(s)	519
GsuI	CTGGAG	1 cut(s)	185
HaeII	RGCGCY	1 cut(s)	565
HaeIII	GGCC	2 cut(s)	43, 307
HapII	CCGG	1 cut(s)	29
HgaI	GACGC	1 cut(s)	410
HhaI	GCGC	1 cut(s)	564
Hin1I	GRCGYC	1 cut(s)	402
Hin1II	CATG	7 cut(s)	72, 191, 367, 431, 479, 500, 679
Hin6I	GCGC	1 cut(s)	562
HinP1I	GCGC	1 cut(s)	562
HindIII	AAGCTT	2 cut(s)	110, 551
HinfI	GANTC	6 cut(s)	160, 371, 440, 534, 575, 724
HpaII	CCGG	1 cut(s)	29
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	2 cut(s)	502, 740
Hpy188I	TCNGA	4 cut(s)	208, 349, 376, 582
Hpy188III	TCNNGA	2 cut(s)	164, 599
Hpy8I	GTNNAC	2 cut(s)	502, 740
Hpy99I	CGWCG	1 cut(s)	404
HpyAV	CCTTC	2 cut(s)	109, 190
HpyCH4III	ACNGT	1 cut(s)	8
HpyF10VI	GCNNNNNNNGC	5 cut(s)	69, 326, 335, 559, 568
HpyF3I	CTNAG	6 cut(s)	135, 236, 373, 581, 694, 699
Hsp92I	GRCGYC	1 cut(s)	402
Hsp92II	CATG	7 cut(s)	72, 191, 367, 431, 479, 500, 679
HspAI	GCGC	1 cut(s)	562
KroI	GCCGGC	1 cut(s)	28
KroNI	GCCGGC	1 cut(s)	30
Kzo9I	GATC	4 cut(s)	128, 262, 344, 619
LguI	GCTCTTC	1 cut(s)	426
LmnI	GCTCC	2 cut(s)	80, 394
LpnPI	CCDG	8 cut(s)	42, 149, 279, 306, 330, 429, 470, 647
Lsp1109I	GCAGC	1 cut(s)	530
LweI	GCATC	5 cut(s)	190, 212, 697, 757, 764
MaeI	CTAG	2 cut(s)	368, 790
MaeIII	GTNAC	1 cut(s)	406
MalI	GATC	4 cut(s)	130, 264, 346, 621
MboI	GATC	4 cut(s)	128, 262, 344, 619
MboII	GAAGA	6 cut(s)	151, 235, 346, 443, 491, 655
MflI	RGATCY	1 cut(s)	619
MhlI	GDGCHC	3 cut(s)	85, 124, 587
MluCI	AATT	4 cut(s)	148, 230, 267, 778
MlyI	GAGTC	3 cut(s)	154, 365, 584
MnlI	CCTC	7 cut(s)	33, 54, 70, 202, 318, 604, 738
Mph1103I	ATGCAT	2 cut(s)	205, 712
MroNI	GCCGGC	1 cut(s)	28
MseI	TTAA	2 cut(s)	228, 720
MslI	CAYNNNNRTG	2 cut(s)	294, 735
MspA1I	CMGCKG	1 cut(s)	134
MspCI	CTTAAG	1 cut(s)	719
MspI	CCGG	1 cut(s)	29
MspR9I	CCNGG	1 cut(s)	294
MvaI	CCWGG	1 cut(s)	294
MwoI	GCNNNNNNNGC	5 cut(s)	69, 326, 335, 559, 568
NaeI	GCCGGC	1 cut(s)	30
NdeI	CATATG	1 cut(s)	567
NdeII	GATC	4 cut(s)	128, 262, 344, 619
NgoMIV	GCCGGC	1 cut(s)	28
NlaIII	CATG	7 cut(s)	72, 191, 367, 431, 479, 500, 679
NlaIV	GGNNCC	1 cut(s)	82
NsiI	ATGCAT	2 cut(s)	205, 712
NspI	RCATGY	4 cut(s)	72, 367, 500, 679
OliI	CACNNNNGTG	1 cut(s)	294
PaeR7I	CTCGAG	1 cut(s)	572
PceI	AGGCCT	1 cut(s)	43
PciSI	GCTCTTC	1 cut(s)	426
PdiI	GCCGGC	1 cut(s)	30
PfeI	GAWTC	3 cut(s)	440, 534, 724
PkrI	GCNGC	1 cut(s)	520
Ple19I	CGATCG	1 cut(s)	347
PleI	GAGTC	3 cut(s)	154, 365, 583
PpsI	GAGTC	3 cut(s)	154, 365, 583
Psp6I	CCWGG	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	292
PspN4I	GGNNCC	1 cut(s)	82
PspPI	GGNCC	1 cut(s)	305
PspXI	VCTCGAGB	1 cut(s)	572
PsrI	GAACNNNNNNTAC	2 cut(s)	494, 526
PsuI	RGATCY	1 cut(s)	619
PvuI	CGATCG	1 cut(s)	347
PvuII	CAGCTG	1 cut(s)	134
RsaI	GTAC	5 cut(s)	19, 461, 503, 542, 741
RsaNI	GTAC	5 cut(s)	18, 460, 502, 541, 740
RseI	CAYNNNNRTG	2 cut(s)	294, 735
SapI	GCTCTTC	1 cut(s)	426
SaqAI	TTAA	2 cut(s)	228, 720
SatI	GCNGC	1 cut(s)	519
Sau3AI	GATC	4 cut(s)	128, 262, 344, 619
Sau96I	GGNCC	1 cut(s)	305
SchI	GAGTC	3 cut(s)	154, 365, 584
ScrFI	CCNGG	1 cut(s)	294
SduI	GDGCHC	3 cut(s)	85, 124, 587
SetI	ASST	9 cut(s)	114, 136, 319, 391, 438, 546, 555, 615, 700
SfaNI	GCATC	5 cut(s)	190, 212, 697, 757, 764
SfcI	CTRYAG	1 cut(s)	545
Sfr274I	CTCGAG	1 cut(s)	572
SlaI	CTCGAG	1 cut(s)	572
SmiMI	CAYNNNNRTG	2 cut(s)	294, 735
SmlI	CTYRAG	3 cut(s)	123, 572, 719
SmoI	CTYRAG	3 cut(s)	123, 572, 719
Sse9I	AATT	4 cut(s)	148, 230, 267, 778
SseBI	AGGCCT	1 cut(s)	43
SspMI	CTAG	2 cut(s)	368, 790
StuI	AGGCCT	1 cut(s)	43
StyD4I	CCNGG	1 cut(s)	292
StyI	CCWWGG	2 cut(s)	47, 654
TaaI	ACNGT	1 cut(s)	8
TaqI	TCGA	1 cut(s)	573
TasI	AATT	4 cut(s)	148, 230, 267, 778
TatI	WGTACW	4 cut(s)	17, 459, 501, 739
TfiI	GAWTC	3 cut(s)	440, 534, 724
Tru1I	TTAA	2 cut(s)	228, 720
Tru9I	TTAA	2 cut(s)	228, 720
TseI	GCWGC	1 cut(s)	518
TspDTI	ATGAA	5 cut(s)	91, 444, 492, 503, 652
TspGWI	ACGGA	1 cut(s)	546
Vha464I	CTTAAG	1 cut(s)	719
XapI	RAATTY	4 cut(s)	148, 230, 267, 778
XceI	RCATGY	4 cut(s)	72, 367, 500, 679
XhoI	CTCGAG	1 cut(s)	572
XspI	CTAG	2 cut(s)	368, 790
Zsp2I	ATGCAT	2 cut(s)	205, 712

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.