AT3G56380

two-component response regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014474
Physical Location & Seq
Forward (+)
20905264 .. 20906397
1134 bp
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UTR
Exon/CDS
Intron
AT3G56380.1

Sequence Viewer

Length: 462 bp
ATGAATAAGGGCTGTGGAAGTGGAAGTGATTCTTGTTTATCGTCAATGGAGGAGGAGCTTCATGTTTTAGCAGTAGATGATAATCTAATTGACCGTAAACTTGTTGAGAGAATCCTCAAGATCTCTTCTTGCAAAGTGACAACTGCAGAAAACGGGCTTAGAGCTTTAGAATATTTAGGCTTGGGAGATCCACAACAGACTGATTCATTGACTAATGTAATGAAGGTGAATCTCATCATCACTGATTATTGTATGCCAGGAATGACAGGTTTTGAGCTGCTTAAGAAAGTGAAGGAATCATCGAATCTAAAGGAAGTACCTGTTGTGATATTGTCTTCAGAGAACATTCCTACCCGCATCAACAAATGTTTAGCGAGTGGAGCACAGATGTTTATGCAGAAGCCACTGAAACTATCTGATGTAGAGAAACTGAAATGCCATCTTTTAAATTGCAGAAGCTGA

Protein Analysis

153

Amino Acids

16.86

Weight (kDa)

6.72

Isoelectric Point (pI)

41.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 22 - 141 5e-19 Response regulator receiver domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014474)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56380 AT3G56380
fragaria_vesca FvH4_7g25970
malus_domestica MD01G1168100.v1.1 MD07G1234100.v1.1
prunus_persica Prupe.2G264500_v2.0.a1
pyrus_communis pycom01g18110 pycom07g21190
rosa_chinensis RchiOBHm_Chr1g0372351
rosa_laevigata RLG00000026905
rosa_roxburghii Rroxscaffold_4G00285020
rosa_rugosa Rorug01G0371300 Rorug01G0371300
rosa_samantha Rh1AG379800 Rh1BG343300 Rh1CG356800
rosa_wichuraiana Rw1G033390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 355
AclWI GGATC 1 cut(s) 182
AcuI CTGAAG 1 cut(s) 321
AfaI GTAC 1 cut(s) 318
AflII CTTAAG 1 cut(s) 281
AjnI CCWGG 1 cut(s) 256
AluBI AGCT 4 cut(s) 58, 164, 277, 459
AluI AGCT 4 cut(s) 58, 164, 277, 459
Alw21I GWGCWC 1 cut(s) 385
AlwI GGATC 1 cut(s) 182
AlwNI CAGNNNCTG 1 cut(s) 459
ApeKI GCWGC 1 cut(s) 277
Asp700I GAANNNNTTC 1 cut(s) 28
AsuHPI GGTGA 1 cut(s) 238
BbsI GAAGAC 1 cut(s) 327
Bbv12I GWGCWC 1 cut(s) 385
BbvI GCAGC 1 cut(s) 264
BccI CCATC 1 cut(s) 447
BciT130I CCWGG 1 cut(s) 258
BfmI CTRYAG 1 cut(s) 144
BfrI CTTAAG 1 cut(s) 281
BglII AGATCT 1 cut(s) 120
BisI GCNGC 1 cut(s) 278
BlsI GCNGC 1 cut(s) 279
Bme1390I CCNGG 1 cut(s) 258
BmrFI CCNGG 1 cut(s) 258
BmsI GCATC 1 cut(s) 366
BpiI GAAGAC 1 cut(s) 327
BpuEI CTTGAG 1 cut(s) 101
BsaBI GATNNNNATC 1 cut(s) 81
Bse8I GATNNNNATC 1 cut(s) 81
BseBI CCWGG 1 cut(s) 258
BseJI GATNNNNATC 1 cut(s) 81
BseRI GAGGAG 2 cut(s) 65, 68
BseXI GCAGC 1 cut(s) 264
BsiHKAI GWGCWC 1 cut(s) 385
Bsp1286I GDGCHC 1 cut(s) 385
Bsp143I GATC 2 cut(s) 120, 187
BspACI CCGC 1 cut(s) 355
BspMAI CTGCAG 1 cut(s) 148
BspPI GGATC 1 cut(s) 182
BspTI CTTAAG 1 cut(s) 281
BssMI GATC 2 cut(s) 120, 187
Bst2UI CCWGG 1 cut(s) 258
Bst4CI ACNGT 1 cut(s) 95
Bst6I CTCTTC 1 cut(s) 130
BstAFI CTTAAG 1 cut(s) 281
BstDEI CTNAG 1 cut(s) 158
BstKTI GATC 2 cut(s) 123, 190
BstMBI GATC 2 cut(s) 120, 187
BstMWI GCNNNNNNNGC 1 cut(s) 380
BstNI CCWGG 1 cut(s) 258
BstSCI CCNGG 1 cut(s) 256
BstSFI CTRYAG 1 cut(s) 144
BstV1I GCAGC 1 cut(s) 264
BstV2I GAAGAC 1 cut(s) 327
BstX2I RGATCY 2 cut(s) 120, 187
BstYI RGATCY 2 cut(s) 120, 187
BtsIMutI CAGTG 2 cut(s) 240, 404
CaiI CAGNNNCTG 1 cut(s) 459
Csp6I GTAC 1 cut(s) 317
CviAII CATG 1 cut(s) 62
CviJI RGCY 8 cut(s) 12, 58, 157, 164, 180, 277, 403, 459
CviKI_1 RGCY 8 cut(s) 12, 58, 157, 164, 180, 277, 403, 459
CviQI GTAC 1 cut(s) 317
DdeI CTNAG 1 cut(s) 158
DpnI GATC 2 cut(s) 122, 189
DpnII GATC 2 cut(s) 120, 187
DraI TTTAAA 1 cut(s) 447
Eam1104I CTCTTC 1 cut(s) 130
EarI CTCTTC 1 cut(s) 130
Eco57I CTGAAG 1 cut(s) 321
EcoRII CCWGG 1 cut(s) 256
FaeI CATG 1 cut(s) 65
FaiI YATR 3 cut(s) 63, 254, 395
FalI AAGNNNNNCTT 2 cut(s) 16, 48
FatI CATG 1 cut(s) 61
FauI CCCGC 1 cut(s) 362
Fnu4HI GCNGC 1 cut(s) 278
Fsp4HI GCNGC 1 cut(s) 278
GluI GCNGC 1 cut(s) 278
Hin1II CATG 1 cut(s) 65
HinfI GANTC 6 cut(s) 29, 111, 203, 229, 296, 304
HphI GGTGA 1 cut(s) 238
Hpy166II GTNNAC 1 cut(s) 98
Hpy188I TCNGA 2 cut(s) 340, 418
Hpy188III TCNNGA 1 cut(s) 118
Hpy8I GTNNAC 1 cut(s) 98
HpyAV CCTTC 2 cut(s) 217, 286
HpyCH4III ACNGT 1 cut(s) 95
HpyCH4V TGCA 4 cut(s) 132, 146, 397, 453
HpyF10VI GCNNNNNNNGC 1 cut(s) 380
HpyF3I CTNAG 1 cut(s) 158
Hsp92II CATG 1 cut(s) 65
Kzo9I GATC 2 cut(s) 120, 187
LmnI GCTCC 2 cut(s) 55, 380
LpnPI CCDG 4 cut(s) 243, 252, 270, 333
Lsp1109I GCAGC 1 cut(s) 264
LweI GCATC 1 cut(s) 366
MaeIII GTNAC 1 cut(s) 136
MalI GATC 2 cut(s) 122, 189
MboI GATC 2 cut(s) 120, 187
MboII GAAGA 2 cut(s) 117, 327
MflI RGATCY 2 cut(s) 120, 187
MhlI GDGCHC 1 cut(s) 385
MluCI AATT 2 cut(s) 87, 448
MnlI CCTC 3 cut(s) 43, 46, 125
MroXI GAANNNNTTC 1 cut(s) 28
MseI TTAA 2 cut(s) 282, 446
MspCI CTTAAG 1 cut(s) 281
MspR9I CCNGG 1 cut(s) 258
MvaI CCWGG 1 cut(s) 258
MwoI GCNNNNNNNGC 1 cut(s) 380
NdeII GATC 2 cut(s) 120, 187
NlaIII CATG 1 cut(s) 65
NmuCI GTSAC 1 cut(s) 136
PdmI GAANNNNTTC 1 cut(s) 28
PfeI GAWTC 6 cut(s) 29, 111, 203, 229, 296, 304
PkrI GCNGC 1 cut(s) 279
Psp6I CCWGG 1 cut(s) 256
PspGI CCWGG 1 cut(s) 256
PstI CTGCAG 1 cut(s) 148
PstNI CAGNNNCTG 1 cut(s) 459
PsuI RGATCY 2 cut(s) 120, 187
RsaI GTAC 1 cut(s) 318
RsaNI GTAC 1 cut(s) 317
SaqAI TTAA 2 cut(s) 282, 446
SatI GCNGC 1 cut(s) 278
Sau3AI GATC 2 cut(s) 120, 187
ScrFI CCNGG 1 cut(s) 258
SduI GDGCHC 1 cut(s) 385
SetI ASST 7 cut(s) 60, 166, 228, 271, 279, 322, 461
SfaNI GCATC 1 cut(s) 366
SfcI CTRYAG 1 cut(s) 144
SmlI CTYRAG 2 cut(s) 116, 281
SmoI CTYRAG 2 cut(s) 116, 281
Sse9I AATT 2 cut(s) 87, 448
SsiI CCGC 1 cut(s) 355
SspI AATATT 1 cut(s) 173
StyD4I CCNGG 1 cut(s) 256
TaaI ACNGT 1 cut(s) 95
TaqI TCGA 1 cut(s) 302
TasI AATT 2 cut(s) 87, 448
TfiI GAWTC 6 cut(s) 29, 111, 203, 229, 296, 304
Tru1I TTAA 2 cut(s) 282, 446
Tru9I TTAA 2 cut(s) 282, 446
TscAI CASTG 2 cut(s) 247, 411
TseFI GTSAC 1 cut(s) 136
TseI GCWGC 1 cut(s) 277
Tsp45I GTSAC 1 cut(s) 136
TspDTI ATGAA 4 cut(s) 17, 50, 195, 236
TspRI CASTG 2 cut(s) 247, 411
Vha464I CTTAAG 1 cut(s) 281
XmnI GAANNNNTTC 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.