Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0014474

Physical Location & Seq

Genomic Coordinates Forward (+)

27253523 .. 27254652

Gene Structure 1130 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1168100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGAGGCTTCTTCTTCTTCTTCCTCCTCAAAGGGTTTCATGGCAAATGTGGAGCAACCCCATGTTTTAGCCGTCGATGACAGTCTCATCGACCGAAAACTGATCGAAAAGCTGCTCACAAATTTGTCTTGCAAAGTGACAACTGCAGAAAATGGGGCAAGGGCGTTGGAGTTTCTGGGCTTGGGAGATCAACAACACAATAGCTTGGAGAGTAATGTTTCAAACTCAAAGGTAAATCTGGTAATTACTGACTACTGTATGCCAGGAATGACAGGCTATGAACTGCTCAAGAAAATCAAGGAATCATCAATCATGAAGGAGGTTCCAGTGGTGATTATGTCATCTGAAAACGTACCGAATCGGATTGACAAGTGCTTAGAGGAAGGAGCTCAAATGTTCATGCTAAAGCCACTGAGACAGTCTGATATAAAGAAATTGAGATATCATTTGATGAACTGCAATAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

156

Amino Acids

17.23

Weight (kDa)

6.3

Isoelectric Point (pI)

43.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	22 - 145	2.7e-20	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56380 AT3G56380
fragaria_vesca	FvH4_7g25970
malus_domestica	MD01G1168100.v1.1 MD07G1234100.v1.1
prunus_persica	Prupe.2G264500_v2.0.a1
pyrus_communis	pycom01g18110 pycom07g21190
rosa_chinensis	RchiOBHm_Chr1g0372351
rosa_laevigata	RLG00000026905
rosa_roxburghii	Rroxscaffold_4G00285020
rosa_rugosa	Rorug01G0371300 Rorug01G0371300
rosa_samantha	Rh1AG379800 Rh1BG343300 Rh1CG356800
rosa_wichuraiana	Rw1G033390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	121
AfaI	GTAC	1 cut(s)	354
AgsI	TTSAA	1 cut(s)	222
AjnI	CCWGG	1 cut(s)	262
AluBI	AGCT	4 cut(s)	112, 204, 389, 465
AluI	AGCT	4 cut(s)	112, 204, 389, 465
Alw21I	GWGCWC	1 cut(s)	391
Alw26I	GTCTC	2 cut(s)	89, 409
ApeKI	GCWGC	1 cut(s)	112
ApoI	RAATTY	1 cut(s)	121
AsuHPI	GGTGA	1 cut(s)	343
BanII	GRGCYC	1 cut(s)	391
Bbv12I	GWGCWC	1 cut(s)	391
BbvI	GCAGC	1 cut(s)	99
BceAI	ACGGC	1 cut(s)	56
BciT130I	CCWGG	1 cut(s)	264
BcoDI	GTCTC	2 cut(s)	89, 409
BfaI	CTAG	1 cut(s)	466
BfmI	CTRYAG	1 cut(s)	144
BisI	GCNGC	1 cut(s)	113
BlsI	GCNGC	1 cut(s)	114
Bme1390I	CCNGG	1 cut(s)	264
BmiI	GGNNCC	1 cut(s)	324
BmrFI	CCNGG	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	272
Bse1I	ACTGG	1 cut(s)	326
BseBI	CCWGG	1 cut(s)	264
BseMII	CTCAG	1 cut(s)	404
BseNI	ACTGG	1 cut(s)	326
BseRI	GAGGAG	1 cut(s)	16
BseXI	GCAGC	1 cut(s)	99
Bsh1285I	CGRYCG	1 cut(s)	94
BsiEI	CGRYCG	1 cut(s)	94
BsiHKAI	GWGCWC	1 cut(s)	391
BsmAI	GTCTC	2 cut(s)	89, 409
Bsp1286I	GDGCHC	1 cut(s)	391
Bsp143I	GATC	2 cut(s)	102, 187
BspCNI	CTCAG	1 cut(s)	405
BspHI	TCATGA	1 cut(s)	312
BspLI	GGNNCC	1 cut(s)	324
BspMAI	CTGCAG	1 cut(s)	148
BsrI	ACTGG	1 cut(s)	326
BssMI	GATC	2 cut(s)	102, 187
Bst2UI	CCWGG	1 cut(s)	264
Bst4CI	ACNGT	3 cut(s)	83, 257, 420
BstDEI	CTNAG	2 cut(s)	376, 413
BstKTI	GATC	2 cut(s)	105, 190
BstMAI	GTCTC	2 cut(s)	89, 409
BstMBI	GATC	2 cut(s)	102, 187
BstMCI	CGRYCG	1 cut(s)	94
BstNI	CCWGG	1 cut(s)	264
BstSCI	CCNGG	1 cut(s)	262
BstSFI	CTRYAG	1 cut(s)	144
BstV1I	GCAGC	1 cut(s)	99
BtsIMutI	CAGTG	2 cut(s)	333, 410
CciI	TCATGA	1 cut(s)	312
Csp6I	GTAC	1 cut(s)	353
CviAII	CATG	4 cut(s)	40, 62, 313, 400
CviJI	RGCY	9 cut(s)	8, 71, 112, 180, 204, 276, 389, 409, 465
CviKI_1	RGCY	9 cut(s)	8, 71, 112, 180, 204, 276, 389, 409, 465
CviQI	GTAC	1 cut(s)	353
DdeI	CTNAG	2 cut(s)	376, 413
DpnI	GATC	2 cut(s)	104, 189
DpnII	GATC	2 cut(s)	102, 187
Ecl136II	GAGCTC	1 cut(s)	389
Eco24I	GRGCYC	1 cut(s)	391
Eco32I	GATATC	1 cut(s)	443
Eco53kI	GAGCTC	1 cut(s)	389
EcoICRI	GAGCTC	1 cut(s)	389
EcoRII	CCWGG	1 cut(s)	262
EcoRV	GATATC	1 cut(s)	443
EcoT38I	GRGCYC	1 cut(s)	391
FaeI	CATG	4 cut(s)	43, 65, 316, 403
FaiI	YATR	8 cut(s)	41, 63, 260, 279, 314, 338, 401, 428
FatI	CATG	4 cut(s)	39, 61, 312, 399
Fnu4HI	GCNGC	1 cut(s)	113
FriOI	GRGCYC	1 cut(s)	391
Fsp4HI	GCNGC	1 cut(s)	113
FspBI	CTAG	1 cut(s)	466
GluI	GCNGC	1 cut(s)	113
Hin1II	CATG	4 cut(s)	43, 65, 316, 403
HinfI	GANTC	2 cut(s)	302, 358
HphI	GGTGA	1 cut(s)	343
Hpy188I	TCNGA	3 cut(s)	346, 363, 424
Hpy188III	TCNNGA	2 cut(s)	289, 313
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	2 cut(s)	310, 377
HpyCH4III	ACNGT	3 cut(s)	83, 257, 420
HpyCH4IV	ACGT	1 cut(s)	351
HpyCH4V	TGCA	3 cut(s)	132, 146, 459
HpyF3I	CTNAG	2 cut(s)	376, 413
HpySE526I	ACGT	1 cut(s)	351
Hsp92II	CATG	4 cut(s)	43, 65, 316, 403
Kzo9I	GATC	2 cut(s)	102, 187
LmnI	GCTCC	2 cut(s)	52, 386
LpnPI	CCDG	6 cut(s)	161, 224, 249, 258, 276, 339
Lsp1109I	GCAGC	1 cut(s)	99
MaeI	CTAG	1 cut(s)	466
MaeII	ACGT	1 cut(s)	351
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	2 cut(s)	104, 189
MboI	GATC	2 cut(s)	102, 187
MboII	GAAGA	4 cut(s)	3, 6, 9, 12
MhlI	GDGCHC	1 cut(s)	391
MluCI	AATT	3 cut(s)	121, 243, 434
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	4 cut(s)	34, 37, 313, 373
MspR9I	CCNGG	1 cut(s)	264
MvaI	CCWGG	1 cut(s)	264
NdeII	GATC	2 cut(s)	102, 187
NlaIII	CATG	4 cut(s)	43, 65, 316, 403
NlaIV	GGNNCC	1 cut(s)	324
NmuCI	GTSAC	1 cut(s)	136
PagI	TCATGA	1 cut(s)	312
PfeI	GAWTC	2 cut(s)	302, 358
PkrI	GCNGC	1 cut(s)	114
Psp124BI	GAGCTC	1 cut(s)	391
Psp6I	CCWGG	1 cut(s)	262
PspGI	CCWGG	1 cut(s)	262
PspN4I	GGNNCC	1 cut(s)	324
PstI	CTGCAG	1 cut(s)	148
RsaI	GTAC	1 cut(s)	354
RsaNI	GTAC	1 cut(s)	353
SacI	GAGCTC	1 cut(s)	391
SatI	GCNGC	1 cut(s)	113
Sau3AI	GATC	2 cut(s)	102, 187
ScrFI	CCNGG	1 cut(s)	264
SduI	GDGCHC	1 cut(s)	391
SetI	ASST	7 cut(s)	114, 206, 234, 324, 354, 391, 467
SfcI	CTRYAG	1 cut(s)	144
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	3 cut(s)	121, 243, 434
SspMI	CTAG	1 cut(s)	466
SstI	GAGCTC	1 cut(s)	391
StyD4I	CCNGG	1 cut(s)	262
TaaI	ACNGT	3 cut(s)	83, 257, 420
TaiI	ACGT	1 cut(s)	354
TaqI	TCGA	3 cut(s)	75, 90, 105
TaqII	GACCGA	1 cut(s)	108
TasI	AATT	3 cut(s)	121, 243, 434
TfiI	GAWTC	2 cut(s)	302, 358
TscAI	CASTG	2 cut(s)	333, 417
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	1 cut(s)	112
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	5 cut(s)	28, 294, 329, 388, 467
TspRI	CASTG	2 cut(s)	333, 417
XapI	RAATTY	1 cut(s)	121
XspI	CTAG	1 cut(s)	466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.