Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0014474

Physical Location & Seq

Genomic Coordinates Forward (+)

19752737 .. 19754495

Gene Structure 1759 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g25970.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGAGTCTGGACTTTCTTCTTCTTCGAAGGGTTTCATGGATATTGTGGAGCAACCTCATGTTTTGGCTGTGGATGACAGTGATATTGATCGGAAACTTATCGAAAAGCTGCTCAAGAATTTCTCTTGTAAAGTGACTACTGCAGAAAATGGGGCAAGAGCATTGGAGTTTCTAGGCTTGGGAGATCATCCAAACCATTGCAATGTCTCAAAGGTAAATCTGGTAATTACAGACTATTGTATGCCAGGAATGACAGGATATGAACTGCTTAAGAAAATCAAGGAATCATCAGTCATGAAGGAGGTTCCGGTGGTGATTATGTCATCTGAAAACATACCGAACCGGATTAACAAGTGTTTGGAGGAAGGTGCTCAGATGTTCATGCTAAAACCGCTCAAACAGTCGGATATTAAGCAACTGAGATGTCATCTGAAGAACTGTGGGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

150

Amino Acids

16.6

Weight (kDa)

6.89

Isoelectric Point (pI)

40.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	21 - 139	9.1e-22	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56380 AT3G56380
fragaria_vesca	FvH4_7g25970
malus_domestica	MD01G1168100.v1.1 MD07G1234100.v1.1
prunus_persica	Prupe.2G264500_v2.0.a1
pyrus_communis	pycom01g18110 pycom07g21190
rosa_chinensis	RchiOBHm_Chr1g0372351
rosa_laevigata	RLG00000026905
rosa_roxburghii	Rroxscaffold_4G00285020
rosa_rugosa	Rorug01G0371300 Rorug01G0371300
rosa_samantha	Rh1AG379800 Rh1BG343300 Rh1CG356800
rosa_wichuraiana	Rw1G033390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	394
AciI	CCGC	1 cut(s)	392
AcsI	RAATTY	1 cut(s)	118
AflII	CTTAAG	1 cut(s)	269
AjnI	CCWGG	1 cut(s)	244
AluBI	AGCT	1 cut(s)	109
AluI	AGCT	1 cut(s)	109
Alw21I	GWGCWC	1 cut(s)	373
Alw26I	GTCTC	1 cut(s)	211
ApeKI	GCWGC	1 cut(s)	109
ApoI	RAATTY	1 cut(s)	118
Asp700I	GAANNNNTTC	1 cut(s)	32
AsuHPI	GGTGA	1 cut(s)	325
AsuII	TTCGAA	1 cut(s)	26
Bbv12I	GWGCWC	1 cut(s)	373
BbvI	GCAGC	1 cut(s)	96
BciT130I	CCWGG	1 cut(s)	246
BcoDI	GTCTC	1 cut(s)	211
BfaI	CTAG	1 cut(s)	173
BfmI	CTRYAG	1 cut(s)	141
BfrI	CTTAAG	1 cut(s)	269
BisI	GCNGC	1 cut(s)	110
BlsI	GCNGC	1 cut(s)	111
Bme1390I	CCNGG	1 cut(s)	246
BmiI	GGNNCC	1 cut(s)	306
BmrFI	CCNGG	1 cut(s)	246
Bpu14I	TTCGAA	1 cut(s)	26
BpuEI	CTTGAG	1 cut(s)	98
BsaBI	GATNNNNATC	1 cut(s)	87
BsaWI	WCCGGW	2 cut(s)	307, 342
Bse3DI	GCAATG	2 cut(s)	196, 208
Bse8I	GATNNNNATC	1 cut(s)	87
BseBI	CCWGG	1 cut(s)	246
BseGI	GGATG	2 cut(s)	79, 187
BseJI	GATNNNNATC	1 cut(s)	87
BseMI	GCAATG	2 cut(s)	196, 208
BseMII	CTCAG	2 cut(s)	386, 410
BseXI	GCAGC	1 cut(s)	96
BsiHKAI	GWGCWC	1 cut(s)	373
BsiSI	CCGG	2 cut(s)	308, 343
BsmAI	GTCTC	1 cut(s)	211
Bsp119I	TTCGAA	1 cut(s)	26
Bsp1286I	GDGCHC	1 cut(s)	373
Bsp143I	GATC	2 cut(s)	88, 184
BspACI	CCGC	1 cut(s)	392
BspCNI	CTCAG	2 cut(s)	385, 411
BspHI	TCATGA	1 cut(s)	294
BspLI	GGNNCC	1 cut(s)	306
BspMAI	CTGCAG	1 cut(s)	145
BspT104I	TTCGAA	1 cut(s)	26
BspTI	CTTAAG	1 cut(s)	269
BsrBI	CCGCTC	1 cut(s)	394
BsrDI	GCAATG	2 cut(s)	196, 208
BssMI	GATC	2 cut(s)	88, 184
Bst2UI	CCWGG	1 cut(s)	246
Bst4CI	ACNGT	3 cut(s)	80, 402, 440
BstAFI	CTTAAG	1 cut(s)	269
BstBI	TTCGAA	1 cut(s)	26
BstDEI	CTNAG	2 cut(s)	372, 419
BstF5I	GGATG	2 cut(s)	79, 187
BstKTI	GATC	2 cut(s)	91, 187
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	2 cut(s)	88, 184
BstMWI	GCNNNNNNNGC	1 cut(s)	391
BstNI	CCWGG	1 cut(s)	246
BstSCI	CCNGG	1 cut(s)	244
BstSFI	CTRYAG	1 cut(s)	141
BstV1I	GCAGC	1 cut(s)	96
BtsCI	GGATG	2 cut(s)	79, 187
BtsIMutI	CAGTG	1 cut(s)	85
CciI	TCATGA	1 cut(s)	294
CviAII	CATG	4 cut(s)	37, 59, 295, 382
CviJI	RGCY	3 cut(s)	68, 109, 177
CviKI_1	RGCY	3 cut(s)	68, 109, 177
DdeI	CTNAG	2 cut(s)	372, 419
DpnI	GATC	2 cut(s)	90, 186
DpnII	GATC	2 cut(s)	88, 184
EcoRII	CCWGG	1 cut(s)	244
FaeI	CATG	4 cut(s)	40, 62, 298, 385
FaiI	YATR	8 cut(s)	38, 60, 242, 261, 296, 320, 335, 383
FatI	CATG	4 cut(s)	36, 58, 294, 381
Fnu4HI	GCNGC	1 cut(s)	110
FokI	GGATG	2 cut(s)	86, 174
Fsp4HI	GCNGC	1 cut(s)	110
FspBI	CTAG	1 cut(s)	173
GluI	GCNGC	1 cut(s)	110
HapII	CCGG	2 cut(s)	308, 343
Hin1II	CATG	4 cut(s)	40, 62, 298, 385
HinfI	GANTC	2 cut(s)	5, 284
HpaII	CCGG	2 cut(s)	308, 343
HphI	GGTGA	1 cut(s)	325
Hpy188I	TCNGA	5 cut(s)	93, 328, 375, 406, 432
Hpy188III	TCNNGA	3 cut(s)	9, 115, 295
HpyAV	CCTTC	3 cut(s)	22, 292, 359
HpyCH4III	ACNGT	3 cut(s)	80, 402, 440
HpyCH4V	TGCA	2 cut(s)	143, 201
HpyF10VI	GCNNNNNNNGC	1 cut(s)	391
HpyF3I	CTNAG	2 cut(s)	372, 419
Hsp92II	CATG	4 cut(s)	40, 62, 298, 385
Kzo9I	GATC	2 cut(s)	88, 184
LmnI	GCTCC	1 cut(s)	49
LpnPI	CCDG	6 cut(s)	206, 231, 240, 258, 321, 356
Lsp1109I	GCAGC	1 cut(s)	96
MaeI	CTAG	1 cut(s)	173
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	2 cut(s)	90, 186
MbiI	CCGCTC	1 cut(s)	394
MboI	GATC	2 cut(s)	88, 184
MboII	GAAGA	4 cut(s)	9, 12, 15, 445
MhlI	GDGCHC	1 cut(s)	373
MluCI	AATT	2 cut(s)	118, 225
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	384
MnlI	CCTC	3 cut(s)	66, 295, 355
MroXI	GAANNNNTTC	1 cut(s)	32
MseI	TTAA	3 cut(s)	270, 348, 411
MslI	CAYNNNNRTG	1 cut(s)	201
MspCI	CTTAAG	1 cut(s)	269
MspI	CCGG	2 cut(s)	308, 343
MspR9I	CCNGG	1 cut(s)	246
MvaI	CCWGG	1 cut(s)	246
MwoI	GCNNNNNNNGC	1 cut(s)	391
NdeII	GATC	2 cut(s)	88, 184
NlaIII	CATG	4 cut(s)	40, 62, 298, 385
NlaIV	GGNNCC	1 cut(s)	306
NmuCI	GTSAC	1 cut(s)	133
NspV	TTCGAA	1 cut(s)	26
PagI	TCATGA	1 cut(s)	294
PdmI	GAANNNNTTC	1 cut(s)	32
PfeI	GAWTC	1 cut(s)	284
PkrI	GCNGC	1 cut(s)	111
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Psp6I	CCWGG	1 cut(s)	244
PspGI	CCWGG	1 cut(s)	244
PspN4I	GGNNCC	1 cut(s)	306
PstI	CTGCAG	1 cut(s)	145
RseI	CAYNNNNRTG	1 cut(s)	201
SaqAI	TTAA	3 cut(s)	270, 348, 411
SatI	GCNGC	1 cut(s)	110
Sau3AI	GATC	2 cut(s)	88, 184
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	1 cut(s)	246
SduI	GDGCHC	1 cut(s)	373
SetI	ASST	5 cut(s)	58, 111, 216, 306, 370
SfcI	CTRYAG	1 cut(s)	141
SfuI	TTCGAA	1 cut(s)	26
SmiMI	CAYNNNNRTG	1 cut(s)	201
SmlI	CTYRAG	2 cut(s)	113, 269
SmoI	CTYRAG	2 cut(s)	113, 269
Sse9I	AATT	2 cut(s)	118, 225
SsiI	CCGC	1 cut(s)	392
SspMI	CTAG	1 cut(s)	173
StyD4I	CCNGG	1 cut(s)	244
TaaI	ACNGT	3 cut(s)	80, 402, 440
TaqI	TCGA	2 cut(s)	26, 102
TasI	AATT	2 cut(s)	118, 225
TfiI	GAWTC	1 cut(s)	284
Tru1I	TTAA	3 cut(s)	270, 348, 411
Tru9I	TTAA	3 cut(s)	270, 348, 411
TscAI	CASTG	1 cut(s)	85
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	1 cut(s)	109
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	4 cut(s)	25, 276, 311, 370
TspRI	CASTG	1 cut(s)	85
Vha464I	CTTAAG	1 cut(s)	269
XapI	RAATTY	1 cut(s)	118
XmnI	GAANNNNTTC	1 cut(s)	32
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.