Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0014474

Physical Location & Seq

Genomic Coordinates Forward (+)

17230957 .. 17232062

Gene Structure 1106 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g18110.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGAGGCTTCTTCTTCTTCCTCCTCCTCAAAGGGTTTCATGGCAAATGTGGAGCAACCCCATGTTTTAGCCGTCGATGACAGTCTCATCGACCGAAAACTGGCATATGTTGGATCGATCGAAAAGCTGCTCACAAATTTGTCTTGCAAAGTGACAACTGCAGAAAATGGGGCAAGGGCGTTGGAGTTTCTGGGCTTGGGAGATCAACAACACAATAGCTTGGAGAGTAATGTTTCAAACTCAAAGGTAAATCTGGTAATTACTGACTATTGTATGCCGGGAATGACAGGCTATGAACTTCTCAAGAAAATCAAGGAATCATCAATCATGAAGGAGGTTCCAGTGGTGATTATGTCATCTGAAAACGTACCGAATCGGATTGACAAGTGCTTAGAGGAAGGAGCTCAAATGTTCATGCTAAAGCCACTGAAACAGTCAGATATAAAGAAATTGAGATATCATTTGATGAACTGCAATAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

161

Amino Acids

17.68

Weight (kDa)

6.3

Isoelectric Point (pI)

40.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56380 AT3G56380
fragaria_vesca	FvH4_7g25970
malus_domestica	MD01G1168100.v1.1 MD07G1234100.v1.1
prunus_persica	Prupe.2G264500_v2.0.a1
pyrus_communis	pycom01g18110 pycom07g21190
rosa_chinensis	RchiOBHm_Chr1g0372351
rosa_laevigata	RLG00000026905
rosa_roxburghii	Rroxscaffold_4G00285020
rosa_rugosa	Rorug01G0371300 Rorug01G0371300
rosa_samantha	Rh1AG379800 Rh1BG343300 Rh1CG356800
rosa_wichuraiana	Rw1G033390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	121
AcsI	RAATTY	1 cut(s)	136
AfaI	GTAC	1 cut(s)	369
AfiI	CCNNNNNNNGG	1 cut(s)	100
AgsI	TTSAA	1 cut(s)	237
AluBI	AGCT	4 cut(s)	127, 219, 404, 480
AluI	AGCT	4 cut(s)	127, 219, 404, 480
Alw21I	GWGCWC	1 cut(s)	406
Alw26I	GTCTC	1 cut(s)	89
AlwI	GGATC	1 cut(s)	121
ApeKI	GCWGC	1 cut(s)	127
ApoI	RAATTY	1 cut(s)	136
AsuC2I	CCSGG	1 cut(s)	279
AsuHPI	GGTGA	1 cut(s)	358
BanII	GRGCYC	1 cut(s)	406
Bbv12I	GWGCWC	1 cut(s)	406
BbvI	GCAGC	1 cut(s)	114
BceAI	ACGGC	1 cut(s)	56
BcnI	CCSGG	1 cut(s)	279
BcoDI	GTCTC	1 cut(s)	89
BfaI	CTAG	1 cut(s)	481
BfmI	CTRYAG	1 cut(s)	159
BisI	GCNGC	1 cut(s)	128
BlsI	GCNGC	1 cut(s)	129
Bme1390I	CCNGG	1 cut(s)	279
BmiI	GGNNCC	1 cut(s)	339
BmrFI	CCNGG	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	287
BpuMI	CCSGG	1 cut(s)	279
Bsa29I	ATCGAT	1 cut(s)	116
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse1I	ACTGG	2 cut(s)	105, 341
BseCI	ATCGAT	1 cut(s)	116
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseNI	ACTGG	2 cut(s)	105, 341
BseRI	GAGGAG	2 cut(s)	13, 16
BseXI	GCAGC	1 cut(s)	114
Bsh1285I	CGRYCG	2 cut(s)	94, 120
BshVI	ATCGAT	1 cut(s)	116
BsiEI	CGRYCG	2 cut(s)	94, 120
BsiHKAI	GWGCWC	1 cut(s)	406
BsiSI	CCGG	1 cut(s)	278
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmAI	GTCTC	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	406
Bsp143I	GATC	3 cut(s)	113, 117, 202
BspDI	ATCGAT	1 cut(s)	116
BspHI	TCATGA	1 cut(s)	327
BspLI	GGNNCC	1 cut(s)	339
BspMAI	CTGCAG	1 cut(s)	163
BspPI	GGATC	1 cut(s)	121
BsrI	ACTGG	2 cut(s)	105, 341
BssMI	GATC	3 cut(s)	113, 117, 202
Bst4CI	ACNGT	2 cut(s)	83, 435
BstDEI	CTNAG	1 cut(s)	391
BstKTI	GATC	3 cut(s)	116, 120, 205
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	3 cut(s)	113, 117, 202
BstMCI	CGRYCG	2 cut(s)	94, 120
BstSCI	CCNGG	1 cut(s)	277
BstSFI	CTRYAG	1 cut(s)	159
BstV1I	GCAGC	1 cut(s)	114
Bsu15I	ATCGAT	1 cut(s)	116
BsuTUI	ATCGAT	1 cut(s)	116
BtsIMutI	CAGTG	2 cut(s)	348, 425
CciI	TCATGA	1 cut(s)	327
ClaI	ATCGAT	1 cut(s)	116
Csp6I	GTAC	1 cut(s)	368
CviAII	CATG	4 cut(s)	40, 62, 328, 415
CviJI	RGCY	9 cut(s)	8, 71, 127, 195, 219, 291, 404, 424, 480
CviKI_1	RGCY	9 cut(s)	8, 71, 127, 195, 219, 291, 404, 424, 480
CviQI	GTAC	1 cut(s)	368
DdeI	CTNAG	1 cut(s)	391
DpnI	GATC	3 cut(s)	115, 119, 204
DpnII	GATC	3 cut(s)	113, 117, 202
Ecl136II	GAGCTC	1 cut(s)	404
Eco24I	GRGCYC	1 cut(s)	406
Eco32I	GATATC	1 cut(s)	458
Eco53kI	GAGCTC	1 cut(s)	404
EcoICRI	GAGCTC	1 cut(s)	404
EcoRV	GATATC	1 cut(s)	458
EcoT38I	GRGCYC	1 cut(s)	406
FaeI	CATG	4 cut(s)	43, 65, 331, 418
FatI	CATG	4 cut(s)	39, 61, 327, 414
FauNDI	CATATG	1 cut(s)	106
Fnu4HI	GCNGC	1 cut(s)	128
FriOI	GRGCYC	1 cut(s)	406
Fsp4HI	GCNGC	1 cut(s)	128
FspBI	CTAG	1 cut(s)	481
GluI	GCNGC	1 cut(s)	128
HapII	CCGG	1 cut(s)	278
Hin1II	CATG	4 cut(s)	43, 65, 331, 418
HinfI	GANTC	2 cut(s)	317, 373
HpaII	CCGG	1 cut(s)	278
HphI	GGTGA	1 cut(s)	358
Hpy188I	TCNGA	3 cut(s)	361, 378, 439
Hpy188III	TCNNGA	2 cut(s)	304, 328
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	2 cut(s)	325, 392
HpyCH4III	ACNGT	2 cut(s)	83, 435
HpyCH4IV	ACGT	1 cut(s)	366
HpyCH4V	TGCA	3 cut(s)	147, 161, 474
HpyF3I	CTNAG	1 cut(s)	391
HpySE526I	ACGT	1 cut(s)	366
Hsp92II	CATG	4 cut(s)	43, 65, 331, 418
Kzo9I	GATC	3 cut(s)	113, 117, 202
LmnI	GCTCC	2 cut(s)	52, 401
LpnPI	CCDG	6 cut(s)	86, 176, 239, 273, 291, 354
Lsp1109I	GCAGC	1 cut(s)	114
MaeI	CTAG	1 cut(s)	481
MaeII	ACGT	1 cut(s)	366
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	3 cut(s)	115, 119, 204
MboI	GATC	3 cut(s)	113, 117, 202
MboII	GAAGA	3 cut(s)	3, 6, 9
MhlI	GDGCHC	1 cut(s)	406
MluCI	AATT	3 cut(s)	136, 258, 449
MmeI	TCCRAC	2 cut(s)	91, 162
MnlI	CCTC	5 cut(s)	31, 34, 37, 328, 388
MspI	CCGG	1 cut(s)	278
MspR9I	CCNGG	1 cut(s)	279
NciI	CCSGG	1 cut(s)	279
NdeI	CATATG	1 cut(s)	106
NdeII	GATC	3 cut(s)	113, 117, 202
NlaIII	CATG	4 cut(s)	43, 65, 331, 418
NlaIV	GGNNCC	1 cut(s)	339
NmuCI	GTSAC	1 cut(s)	151
PagI	TCATGA	1 cut(s)	327
PfeI	GAWTC	2 cut(s)	317, 373
PkrI	GCNGC	1 cut(s)	129
Ple19I	CGATCG	1 cut(s)	120
Psp124BI	GAGCTC	1 cut(s)	406
PspN4I	GGNNCC	1 cut(s)	339
PstI	CTGCAG	1 cut(s)	163
PvuI	CGATCG	1 cut(s)	120
RsaI	GTAC	1 cut(s)	369
RsaNI	GTAC	1 cut(s)	368
SacI	GAGCTC	1 cut(s)	406
SatI	GCNGC	1 cut(s)	128
Sau3AI	GATC	3 cut(s)	113, 117, 202
ScrFI	CCNGG	1 cut(s)	279
SduI	GDGCHC	1 cut(s)	406
SetI	ASST	7 cut(s)	129, 221, 249, 339, 369, 406, 482
SfcI	CTRYAG	1 cut(s)	159
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
Sse9I	AATT	3 cut(s)	136, 258, 449
SspMI	CTAG	1 cut(s)	481
SstI	GAGCTC	1 cut(s)	406
StyD4I	CCNGG	1 cut(s)	277
TaaI	ACNGT	2 cut(s)	83, 435
TaiI	ACGT	1 cut(s)	369
TaqI	TCGA	4 cut(s)	75, 90, 116, 120
TaqII	GACCGA	1 cut(s)	108
TasI	AATT	3 cut(s)	136, 258, 449
TfiI	GAWTC	2 cut(s)	317, 373
TscAI	CASTG	2 cut(s)	348, 432
TseFI	GTSAC	1 cut(s)	151
TseI	GCWGC	1 cut(s)	127
Tsp45I	GTSAC	1 cut(s)	151
TspDTI	ATGAA	5 cut(s)	28, 309, 344, 403, 482
TspRI	CASTG	2 cut(s)	348, 432
XapI	RAATTY	1 cut(s)	136
XspI	CTAG	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.