Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0014474

Physical Location & Seq

Genomic Coordinates Forward (+)

30763178 .. 30764487

Gene Structure 1310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1234100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGAATCTTCTTCTTCCTCCTCAAAGGGTTTCATGGCAAATGTGGAGCAACCTCATGTTTTAGCCGTCGATGACAGTCTCGTCGACCGAAAACTGATTGAAAAGCTGCTCACAAATTTGTCTTGCAAAGTGACAACTGCAGAAAATGGGGCAAGTGCATTGGAGTTTTTGGGCTTGGGAGATCAACACAATAGCTTGGAGAGTAATGTCTCAAACTCAAAGGTAAATCTGGTAATAACTGACTATTGTATGCCAGGAATGACAGGCTATGAACTGCTCAAGAAAATCAAGGAATCATCAATCATGAAGGAAGTTCCAGTGGTGATTATGTCATCTGAAAACGTACCGACTCGGATTAACAAGTGCTTGGAGGAAGGAGCTCAAATGTTCATGCTAAAGCCACTCAAACAGTCAGACATGAAGAAATTGAGATATCATTTGATGAACTGCAGCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

153

Amino Acids

16.81

Weight (kDa)

6.3

Isoelectric Point (pI)

44.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	20 - 142	9.1e-21	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56380 AT3G56380
fragaria_vesca	FvH4_7g25970
malus_domestica	MD01G1168100.v1.1 MD07G1234100.v1.1
prunus_persica	Prupe.2G264500_v2.0.a1
pyrus_communis	pycom01g18110 pycom07g21190
rosa_chinensis	RchiOBHm_Chr1g0372351
rosa_laevigata	RLG00000026905
rosa_roxburghii	Rroxscaffold_4G00285020
rosa_rugosa	Rorug01G0371300 Rorug01G0371300
rosa_samantha	Rh1AG379800 Rh1BG343300 Rh1CG356800
rosa_wichuraiana	Rw1G033390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	80
AccI	GTMKAC	1 cut(s)	84
AcsI	RAATTY	1 cut(s)	115
AfaI	GTAC	1 cut(s)	345
AgsI	TTSAA	1 cut(s)	101
AjnI	CCWGG	1 cut(s)	253
AluBI	AGCT	4 cut(s)	106, 195, 380, 456
AluI	AGCT	4 cut(s)	106, 195, 380, 456
Alw21I	GWGCWC	1 cut(s)	382
Alw26I	GTCTC	2 cut(s)	83, 214
ApeKI	GCWGC	3 cut(s)	106, 450, 453
ApoI	RAATTY	1 cut(s)	115
AsuHPI	GGTGA	1 cut(s)	334
BanII	GRGCYC	1 cut(s)	382
Bbv12I	GWGCWC	1 cut(s)	382
BbvI	GCAGC	1 cut(s)	93
BceAI	ACGGC	1 cut(s)	50
BciT130I	CCWGG	1 cut(s)	255
BcoDI	GTCTC	2 cut(s)	83, 214
BfaI	CTAG	1 cut(s)	457
BfmI	CTRYAG	2 cut(s)	138, 448
BisI	GCNGC	3 cut(s)	107, 451, 454
BlsI	GCNGC	3 cut(s)	108, 452, 455
Bme1390I	CCNGG	1 cut(s)	255
BmrFI	CCNGG	1 cut(s)	255
BpuEI	CTTGAG	1 cut(s)	263
Bse1I	ACTGG	1 cut(s)	317
BseBI	CCWGG	1 cut(s)	255
BseNI	ACTGG	1 cut(s)	317
BseRI	GAGGAG	1 cut(s)	10
BseXI	GCAGC	1 cut(s)	93
Bsh1285I	CGRYCG	1 cut(s)	88
BsiEI	CGRYCG	1 cut(s)	88
BsiHKAI	GWGCWC	1 cut(s)	382
BsmAI	GTCTC	2 cut(s)	83, 214
Bsp1286I	GDGCHC	1 cut(s)	382
Bsp143I	GATC	1 cut(s)	181
BspHI	TCATGA	1 cut(s)	303
BspMAI	CTGCAG	2 cut(s)	142, 452
BsrI	ACTGG	1 cut(s)	317
BssMI	GATC	1 cut(s)	181
Bst2UI	CCWGG	1 cut(s)	255
Bst4CI	ACNGT	2 cut(s)	77, 411
BstKTI	GATC	1 cut(s)	184
BstMAI	GTCTC	2 cut(s)	83, 214
BstMBI	GATC	1 cut(s)	181
BstMCI	CGRYCG	1 cut(s)	88
BstNI	CCWGG	1 cut(s)	255
BstSCI	CCNGG	1 cut(s)	253
BstSFI	CTRYAG	2 cut(s)	138, 448
BstV1I	GCAGC	1 cut(s)	93
BtsIMutI	CAGTG	1 cut(s)	324
CciI	TCATGA	1 cut(s)	303
Csp6I	GTAC	1 cut(s)	344
CviAII	CATG	5 cut(s)	34, 56, 304, 391, 418
CviJI	RGCY	8 cut(s)	65, 106, 174, 195, 267, 380, 400, 456
CviKI_1	RGCY	8 cut(s)	65, 106, 174, 195, 267, 380, 400, 456
CviQI	GTAC	1 cut(s)	344
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
DrdI	GACNNNNNNGTC	1 cut(s)	80
DseDI	GACNNNNNNGTC	1 cut(s)	80
Ecl136II	GAGCTC	1 cut(s)	380
Eco24I	GRGCYC	1 cut(s)	382
Eco32I	GATATC	1 cut(s)	434
Eco53kI	GAGCTC	1 cut(s)	380
EcoICRI	GAGCTC	1 cut(s)	380
EcoRII	CCWGG	1 cut(s)	253
EcoRV	GATATC	1 cut(s)	434
EcoT38I	GRGCYC	1 cut(s)	382
FaeI	CATG	5 cut(s)	37, 59, 307, 394, 421
FaiI	YATR	8 cut(s)	35, 57, 251, 270, 305, 329, 392, 419
FatI	CATG	5 cut(s)	33, 55, 303, 390, 417
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	3 cut(s)	107, 451, 454
FriOI	GRGCYC	1 cut(s)	382
Fsp4HI	GCNGC	3 cut(s)	107, 451, 454
FspBI	CTAG	1 cut(s)	457
GluI	GCNGC	3 cut(s)	107, 451, 454
Hin1II	CATG	5 cut(s)	37, 59, 307, 394, 421
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	3 cut(s)	5, 293, 349
HphI	GGTGA	1 cut(s)	334
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	3 cut(s)	337, 354, 415
Hpy188III	TCNNGA	2 cut(s)	280, 304
Hpy8I	GTNNAC	1 cut(s)	85
Hpy99I	CGWCG	2 cut(s)	71, 86
HpyAV	CCTTC	2 cut(s)	301, 368
HpyCH4III	ACNGT	2 cut(s)	77, 411
HpyCH4IV	ACGT	1 cut(s)	342
HpyCH4V	TGCA	4 cut(s)	126, 140, 158, 450
HpySE526I	ACGT	1 cut(s)	342
Hsp92II	CATG	5 cut(s)	37, 59, 307, 394, 421
Kzo9I	GATC	1 cut(s)	181
LmnI	GCTCC	2 cut(s)	46, 377
LpnPI	CCDG	5 cut(s)	215, 240, 249, 267, 330
Lsp1109I	GCAGC	1 cut(s)	93
MaeI	CTAG	1 cut(s)	457
MaeII	ACGT	1 cut(s)	342
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	1 cut(s)	183
MboI	GATC	1 cut(s)	181
MboII	GAAGA	3 cut(s)	3, 6, 433
MhlI	GDGCHC	1 cut(s)	382
MluCI	AATT	2 cut(s)	115, 425
MlyI	GAGTC	1 cut(s)	343
MnlI	CCTC	4 cut(s)	28, 31, 63, 364
MseI	TTAA	1 cut(s)	357
MspR9I	CCNGG	1 cut(s)	255
MvaI	CCWGG	1 cut(s)	255
NdeII	GATC	1 cut(s)	181
NlaIII	CATG	5 cut(s)	37, 59, 307, 394, 421
NmuCI	GTSAC	1 cut(s)	130
PagI	TCATGA	1 cut(s)	303
PfeI	GAWTC	2 cut(s)	5, 293
PkrI	GCNGC	3 cut(s)	108, 452, 455
PleI	GAGTC	1 cut(s)	343
PpsI	GAGTC	1 cut(s)	343
Psp124BI	GAGCTC	1 cut(s)	382
Psp6I	CCWGG	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	253
PstI	CTGCAG	2 cut(s)	142, 452
RsaI	GTAC	1 cut(s)	345
RsaNI	GTAC	1 cut(s)	344
SacI	GAGCTC	1 cut(s)	382
SalI	GTCGAC	1 cut(s)	83
SaqAI	TTAA	1 cut(s)	357
SatI	GCNGC	3 cut(s)	107, 451, 454
Sau3AI	GATC	1 cut(s)	181
SchI	GAGTC	1 cut(s)	343
ScrFI	CCNGG	1 cut(s)	255
SduI	GDGCHC	1 cut(s)	382
SetI	ASST	7 cut(s)	55, 108, 197, 225, 345, 382, 458
SfcI	CTRYAG	2 cut(s)	138, 448
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
Sse9I	AATT	2 cut(s)	115, 425
SspMI	CTAG	1 cut(s)	457
SstI	GAGCTC	1 cut(s)	382
StyD4I	CCNGG	1 cut(s)	253
TaaI	ACNGT	2 cut(s)	77, 411
TaiI	ACGT	1 cut(s)	345
TaqI	TCGA	2 cut(s)	69, 84
TaqII	GACCGA	1 cut(s)	102
TasI	AATT	2 cut(s)	115, 425
TfiI	GAWTC	2 cut(s)	5, 293
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TscAI	CASTG	1 cut(s)	324
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	3 cut(s)	106, 450, 453
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	6 cut(s)	22, 285, 320, 379, 434, 458
TspRI	CASTG	1 cut(s)	324
XapI	RAATTY	1 cut(s)	115
XmiI	GTMKAC	1 cut(s)	84
XspI	CTAG	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.