Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0014474

Physical Location & Seq

Genomic Coordinates Forward (+)

23009043 .. 23010065

Gene Structure 1023 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g21190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGAGGCTGCTTCTTCTTCCTCCTCAAAGGGTTTCATGGCAAATGTGGAGCAACCCCATGTTTTAGCCGTCGATGACAGTCTCGTCGACCGAAAACTGATTGAAAAGCTGCTCACAAATTTGTCTTGCAAAGTGACAACTGCAGAAAATGGGGCAAGTGCATTGGAGTTTTTGGGCTTGGGAGATCAACACAATAGCTTGGAGAGTAATGTCTCAAACTCAAAGGTAAATCTGGTAATTACTGACTATTGTATGCCAGGAATGACAGGCTATGAACTGCTCAAGAAAATCAAGGAATCATCAATCATGAAGGAAGTTCCAGTGGTGATTATGTCATCTGAAAACATACCGAATCGGATTAACAAGTGCTTAGAGGAAGGAGCTCAAATGTTCATGCTAAAGCCACTCAAACAGTCAGACATGAAGAAATTGAGATATCATTTGATGAACTGCAGCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

154

Amino Acids

16.89

Weight (kDa)

6.3

Isoelectric Point (pI)

43.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	21 - 143	1.2e-20	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56380 AT3G56380
fragaria_vesca	FvH4_7g25970
malus_domestica	MD01G1168100.v1.1 MD07G1234100.v1.1
prunus_persica	Prupe.2G264500_v2.0.a1
pyrus_communis	pycom01g18110 pycom07g21190
rosa_chinensis	RchiOBHm_Chr1g0372351
rosa_laevigata	RLG00000026905
rosa_roxburghii	Rroxscaffold_4G00285020
rosa_rugosa	Rorug01G0371300 Rorug01G0371300
rosa_samantha	Rh1AG379800 Rh1BG343300 Rh1CG356800
rosa_wichuraiana	Rw1G033390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	83
AccI	GTMKAC	1 cut(s)	87
AcsI	RAATTY	1 cut(s)	118
AgsI	TTSAA	1 cut(s)	104
AjnI	CCWGG	1 cut(s)	256
AluBI	AGCT	4 cut(s)	109, 198, 383, 459
AluI	AGCT	4 cut(s)	109, 198, 383, 459
Alw21I	GWGCWC	1 cut(s)	385
Alw26I	GTCTC	2 cut(s)	86, 217
ApeKI	GCWGC	4 cut(s)	8, 109, 453, 456
ApoI	RAATTY	1 cut(s)	118
AsuHPI	GGTGA	1 cut(s)	337
BanII	GRGCYC	1 cut(s)	385
Bbv12I	GWGCWC	1 cut(s)	385
BbvI	GCAGC	1 cut(s)	96
BceAI	ACGGC	1 cut(s)	53
BciT130I	CCWGG	1 cut(s)	258
BcoDI	GTCTC	2 cut(s)	86, 217
BfaI	CTAG	1 cut(s)	460
BfmI	CTRYAG	2 cut(s)	141, 451
BisI	GCNGC	4 cut(s)	9, 110, 454, 457
BlsI	GCNGC	4 cut(s)	10, 111, 455, 458
Bme1390I	CCNGG	1 cut(s)	258
BmrFI	CCNGG	1 cut(s)	258
BpuEI	CTTGAG	1 cut(s)	266
Bse1I	ACTGG	1 cut(s)	320
BseBI	CCWGG	1 cut(s)	258
BseNI	ACTGG	1 cut(s)	320
BseRI	GAGGAG	1 cut(s)	13
BseXI	GCAGC	1 cut(s)	96
Bsh1285I	CGRYCG	1 cut(s)	91
BsiEI	CGRYCG	1 cut(s)	91
BsiHKAI	GWGCWC	1 cut(s)	385
BsmAI	GTCTC	2 cut(s)	86, 217
Bsp1286I	GDGCHC	1 cut(s)	385
Bsp143I	GATC	1 cut(s)	184
BspHI	TCATGA	1 cut(s)	306
BspMAI	CTGCAG	2 cut(s)	145, 455
BsrI	ACTGG	1 cut(s)	320
BssMI	GATC	1 cut(s)	184
Bst2UI	CCWGG	1 cut(s)	258
Bst4CI	ACNGT	2 cut(s)	80, 414
BstDEI	CTNAG	1 cut(s)	370
BstKTI	GATC	1 cut(s)	187
BstMAI	GTCTC	2 cut(s)	86, 217
BstMBI	GATC	1 cut(s)	184
BstMCI	CGRYCG	1 cut(s)	91
BstNI	CCWGG	1 cut(s)	258
BstSCI	CCNGG	1 cut(s)	256
BstSFI	CTRYAG	2 cut(s)	141, 451
BstV1I	GCAGC	1 cut(s)	96
BtsIMutI	CAGTG	1 cut(s)	327
CciI	TCATGA	1 cut(s)	306
CviAII	CATG	5 cut(s)	37, 59, 307, 394, 421
CviJI	RGCY	9 cut(s)	8, 68, 109, 177, 198, 270, 383, 403, 459
CviKI_1	RGCY	9 cut(s)	8, 68, 109, 177, 198, 270, 383, 403, 459
DdeI	CTNAG	1 cut(s)	370
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
DrdI	GACNNNNNNGTC	1 cut(s)	83
DseDI	GACNNNNNNGTC	1 cut(s)	83
Ecl136II	GAGCTC	1 cut(s)	383
Eco24I	GRGCYC	1 cut(s)	385
Eco32I	GATATC	1 cut(s)	437
Eco53kI	GAGCTC	1 cut(s)	383
EcoICRI	GAGCTC	1 cut(s)	383
EcoRII	CCWGG	1 cut(s)	256
EcoRV	GATATC	1 cut(s)	437
EcoT38I	GRGCYC	1 cut(s)	385
FaeI	CATG	5 cut(s)	40, 62, 310, 397, 424
FaiI	YATR	9 cut(s)	38, 60, 254, 273, 308, 332, 347, 395, 422
FatI	CATG	5 cut(s)	36, 58, 306, 393, 420
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	4 cut(s)	9, 110, 454, 457
FriOI	GRGCYC	1 cut(s)	385
Fsp4HI	GCNGC	4 cut(s)	9, 110, 454, 457
FspBI	CTAG	1 cut(s)	460
GluI	GCNGC	4 cut(s)	9, 110, 454, 457
Hin1II	CATG	5 cut(s)	40, 62, 310, 397, 424
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HinfI	GANTC	2 cut(s)	296, 352
HphI	GGTGA	1 cut(s)	337
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	3 cut(s)	340, 357, 418
Hpy188III	TCNNGA	2 cut(s)	283, 307
Hpy8I	GTNNAC	1 cut(s)	88
Hpy99I	CGWCG	2 cut(s)	74, 89
HpyAV	CCTTC	2 cut(s)	304, 371
HpyCH4III	ACNGT	2 cut(s)	80, 414
HpyCH4V	TGCA	4 cut(s)	129, 143, 161, 453
HpyF3I	CTNAG	1 cut(s)	370
Hsp92II	CATG	5 cut(s)	40, 62, 310, 397, 424
Kzo9I	GATC	1 cut(s)	184
LmnI	GCTCC	2 cut(s)	49, 380
LpnPI	CCDG	5 cut(s)	218, 243, 252, 270, 333
Lsp1109I	GCAGC	1 cut(s)	96
MaeI	CTAG	1 cut(s)	460
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MboII	GAAGA	3 cut(s)	6, 9, 436
MhlI	GDGCHC	1 cut(s)	385
MluCI	AATT	3 cut(s)	118, 237, 428
MnlI	CCTC	3 cut(s)	31, 34, 367
MseI	TTAA	1 cut(s)	360
MspR9I	CCNGG	1 cut(s)	258
MvaI	CCWGG	1 cut(s)	258
NdeII	GATC	1 cut(s)	184
NlaIII	CATG	5 cut(s)	40, 62, 310, 397, 424
NmuCI	GTSAC	1 cut(s)	133
PagI	TCATGA	1 cut(s)	306
PfeI	GAWTC	2 cut(s)	296, 352
PkrI	GCNGC	4 cut(s)	10, 111, 455, 458
Psp124BI	GAGCTC	1 cut(s)	385
Psp6I	CCWGG	1 cut(s)	256
PspGI	CCWGG	1 cut(s)	256
PstI	CTGCAG	2 cut(s)	145, 455
SacI	GAGCTC	1 cut(s)	385
SalI	GTCGAC	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	360
SatI	GCNGC	4 cut(s)	9, 110, 454, 457
Sau3AI	GATC	1 cut(s)	184
ScrFI	CCNGG	1 cut(s)	258
SduI	GDGCHC	1 cut(s)	385
SetI	ASST	5 cut(s)	111, 200, 228, 385, 461
SfcI	CTRYAG	2 cut(s)	141, 451
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	3 cut(s)	118, 237, 428
SspMI	CTAG	1 cut(s)	460
SstI	GAGCTC	1 cut(s)	385
StyD4I	CCNGG	1 cut(s)	256
TaaI	ACNGT	2 cut(s)	80, 414
TaqI	TCGA	2 cut(s)	72, 87
TaqII	GACCGA	1 cut(s)	105
TasI	AATT	3 cut(s)	118, 237, 428
TfiI	GAWTC	2 cut(s)	296, 352
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TscAI	CASTG	1 cut(s)	327
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	4 cut(s)	8, 109, 453, 456
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	6 cut(s)	25, 288, 323, 382, 437, 461
TspRI	CASTG	1 cut(s)	327
XapI	RAATTY	1 cut(s)	118
XmiI	GTMKAC	1 cut(s)	87
XspI	CTAG	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.