Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007095

Physical Location & Seq

Genomic Coordinates Forward (+)

20950823 .. 20951892

Gene Structure 1070 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G56540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGGAAAACTACAAGACTGGTCTATAACCACTTGTCTCTTCCTTTTCTTTTTGCATGCATCACAAACCCATTGCACCAGCCAATCACATGTTAGAAACCGTCTATACCGATCAAAGCGAGGGATTGGTTCGTCAATAGACACAAGCCACTTAAATGCGATTCGTCGTTTAAGCGTGTCTTTGTCGCTCCAAAACATAAGCGGTGTTAACCAACAAGAGCAAAAGGAAAGAGATCTAATTGAGAATCTTCCCGGACAGCCTTCAGTTAATTTTAAGCAATATGGCGGTTATGTGACCGTGAATGAGTCAGCAGGTCGATCCTTGTACTATTATTTCGTGGAAGCCACCAATACCAAAAACTCATCACCCCTTGTTCTATGGCTAAACGGAGGACCGGGCTGCTCCTCTCTGTATGGGGCATTTCAAGAGCTTGGTCCATTCCGCGTACATAGCGACAACAAAACACTCTATACCAATCCTTATTCATGGAACAACGTGGCGAACATGTTATTCTTAGAATCTCCGGCAGGAACGGGATTCTCATACACGAACACAACAACGGATATGGAGAATCCCGGGGACATGAAAACAGCAGCTGATAACTACGTTTTCTTGGTGAAATGGCTGGAGAGGTTTCCGGAATATAAAGGAAGAGATTTTTACATCGCTGGTGAGAGTTACGCCGGTCACTATGTTCAGTGGAGACACGGATGCGGTGATTTCGGTGACAGTTACAATGTACGCACTGAAGATGATGAATCTAACGGCTGTTACGGAATGGCTTCCGTGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

264

Amino Acids

29.74

Weight (kDa)

6.16

Isoelectric Point (pI)

45.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	84 - 232	4.2e-72	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52020 AT3G56540 AT3G63470
fragaria_vesca	FvH4_7g01760 FvH4_7g01760 FvH4_7g01760 FvH4_7g01760
malus_domestica	MD02G1300900.v1.1 MD07G1023100.v1.1
prunus_persica	Prupe.2G023700_v2.0.a1 Prupe.2G023700_v2.0.a1 Prupe.2G023800_v2.0.a1 Prupe.2G023900_v2.0.a1
pyrus_communis	pycom02g25260 pycom07g01750
rosa_chinensis	RchiOBHm_Chr1g0318331
rosa_laevigata	RLG00000030544
rosa_multiflora	Rmu_sc0003936.1_g000012
rosa_roxburghii	Rroxscaffold_4G00329330
rosa_rugosa	Rorug01G0020400
rosa_samantha	Rh1AG032500 Rh1BG028100 Rh1CG031000 Rh1DG038600
rosa_wichuraiana	Rw1G002600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	302
AccII	CGCG	1 cut(s)	444
AccIII	TCCGGA	1 cut(s)	637
AciI	CCGC	4 cut(s)	201, 285, 442, 714
AclWI	GGATC	1 cut(s)	312
AcuI	CTGAAG	2 cut(s)	246, 768
AfaI	GTAC	3 cut(s)	326, 447, 741
AflIII	ACRYGT	2 cut(s)	88, 504
AgsI	TTSAA	1 cut(s)	425
AluBI	AGCT	2 cut(s)	430, 596
AluI	AGCT	2 cut(s)	430, 596
Alw26I	GTCTC	2 cut(s)	41, 697
AlwI	GGATC	1 cut(s)	312
AlwNI	CAGNNNCTG	1 cut(s)	596
Ama87I	CYCGRG	1 cut(s)	575
Aor13HI	TCCGGA	1 cut(s)	637
ApeKI	GCWGC	2 cut(s)	399, 593
Asp700I	GAANNNNTTC	1 cut(s)	781
AspS9I	GGNCC	2 cut(s)	392, 434
AsuC2I	CCSGG	4 cut(s)	252, 396, 576, 577
AsuHPI	GGTGA	5 cut(s)	357, 628, 683, 728, 737
AvaI	CYCGRG	1 cut(s)	575
AvaII	GGWCC	2 cut(s)	392, 434
BbvI	GCAGC	2 cut(s)	386, 605
BceAI	ACGGC	1 cut(s)	781
BcnI	CCSGG	4 cut(s)	252, 396, 576, 577
BcoDI	GTCTC	2 cut(s)	41, 697
BfuAI	ACCTGC	1 cut(s)	302
BglII	AGATCT	1 cut(s)	232
BisI	GCNGC	2 cut(s)	400, 594
BlsI	GCNGC	2 cut(s)	401, 595
Bme1390I	CCNGG	4 cut(s)	252, 396, 576, 577
Bme18I	GGWCC	2 cut(s)	392, 434
BmeT110I	CYCGRG	1 cut(s)	575
BmgT120I	GGNCC	2 cut(s)	392, 434
BmrFI	CCNGG	4 cut(s)	252, 396, 576, 577
BmsI	GCATC	2 cut(s)	68, 701
BpmI	CTGGAG	1 cut(s)	647
BpuMI	CCSGG	4 cut(s)	252, 396, 576, 577
BsaJI	CCNNGG	3 cut(s)	575, 576, 786
BsaWI	WCCGGW	1 cut(s)	637
Bse118I	RCCGGY	1 cut(s)	683
Bse1I	ACTGG	1 cut(s)	23
Bse3DI	GCAATG	1 cut(s)	70
BseAI	TCCGGA	1 cut(s)	637
BseDI	CCNNGG	3 cut(s)	575, 576, 786
BseGI	GGATG	1 cut(s)	716
BseMI	GCAATG	1 cut(s)	70
BseNI	ACTGG	1 cut(s)	23
BseRI	GAGGAG	1 cut(s)	394
BseXI	GCAGC	2 cut(s)	386, 605
Bsh1236I	CGCG	1 cut(s)	444
BsiHKCI	CYCGRG	1 cut(s)	575
BsiSI	CCGG	6 cut(s)	252, 395, 524, 576, 638, 684
BslFI	GGGAC	1 cut(s)	593
BsmAI	GTCTC	2 cut(s)	41, 697
BsmFI	GGGAC	1 cut(s)	593
BsoBI	CYCGRG	1 cut(s)	575
Bsp13I	TCCGGA	1 cut(s)	637
Bsp143I	GATC	3 cut(s)	110, 232, 317
BspACI	CCGC	4 cut(s)	201, 285, 442, 714
BspEI	TCCGGA	1 cut(s)	637
BspFNI	CGCG	1 cut(s)	444
BspMI	ACCTGC	1 cut(s)	302
BspPI	GGATC	1 cut(s)	312
BsrDI	GCAATG	1 cut(s)	70
BsrFI	RCCGGY	1 cut(s)	683
BsrI	ACTGG	1 cut(s)	23
BssAI	RCCGGY	1 cut(s)	683
BssECI	CCNNGG	3 cut(s)	575, 576, 786
BssMI	GATC	3 cut(s)	110, 232, 317
Bst4CI	ACNGT	3 cut(s)	101, 298, 731
Bst6I	CTCTTC	2 cut(s)	44, 646
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	1 cut(s)	514
BstDSI	CCRYGG	1 cut(s)	786
BstF5I	GGATG	1 cut(s)	716
BstFNI	CGCG	1 cut(s)	444
BstKTI	GATC	3 cut(s)	113, 235, 320
BstMAI	GTCTC	2 cut(s)	41, 697
BstMBI	GATC	3 cut(s)	110, 232, 317
BstMWI	GCNNNNNNNGC	1 cut(s)	450
BstNSI	RCATGY	3 cut(s)	59, 92, 508
BstSCI	CCNGG	4 cut(s)	250, 394, 574, 575
BstUI	CGCG	1 cut(s)	444
BstV1I	GCAGC	2 cut(s)	386, 605
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
BtgI	CCRYGG	1 cut(s)	786
BtgZI	GCGATG	1 cut(s)	649
BtsCI	GGATG	1 cut(s)	716
BtsIMutI	CAGTG	2 cut(s)	704, 744
BveI	ACCTGC	1 cut(s)	302
Cac8I	GCNNGC	1 cut(s)	57
CaiI	CAGNNNCTG	1 cut(s)	596
Cfr10I	RCCGGY	1 cut(s)	683
Cfr13I	GGNCC	2 cut(s)	392, 434
Cfr9I	CCCGGG	1 cut(s)	575
Csp6I	GTAC	3 cut(s)	325, 446, 740
CviAII	CATG	5 cut(s)	56, 89, 486, 505, 583
CviQI	GTAC	3 cut(s)	325, 446, 740
DdeI	CTNAG	1 cut(s)	514
DpnI	GATC	3 cut(s)	112, 234, 319
DpnII	GATC	3 cut(s)	110, 232, 317
Eam1104I	CTCTTC	2 cut(s)	44, 646
EarI	CTCTTC	2 cut(s)	44, 646
Eco47I	GGWCC	2 cut(s)	392, 434
Eco57I	CTGAAG	2 cut(s)	246, 768
Eco88I	CYCGRG	1 cut(s)	575
EcoT22I	ATGCAT	1 cut(s)	61
FaeI	CATG	5 cut(s)	59, 92, 489, 508, 586
FalI	AAGNNNNNCTT	2 cut(s)	163, 195
FaqI	GGGAC	1 cut(s)	593
FatI	CATG	5 cut(s)	55, 88, 485, 504, 582
Fnu4HI	GCNGC	2 cut(s)	400, 594
FokI	GGATG	1 cut(s)	723
Fsp4HI	GCNGC	2 cut(s)	400, 594
GluI	GCNGC	2 cut(s)	400, 594
GsuI	CTGGAG	1 cut(s)	647
HapII	CCGG	6 cut(s)	252, 395, 524, 576, 638, 684
Hin1II	CATG	5 cut(s)	59, 92, 489, 508, 586
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HinfI	GANTC	7 cut(s)	160, 244, 305, 518, 537, 571, 758
HpaI	GTTAAC	1 cut(s)	208
HpaII	CCGG	6 cut(s)	252, 395, 524, 576, 638, 684
HphI	GGTGA	5 cut(s)	357, 628, 683, 728, 737
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188III	TCNNGA	2 cut(s)	425, 638
Hpy8I	GTNNAC	1 cut(s)	208
Hpy99I	CGWCG	1 cut(s)	168
HpyAV	CCTTC	1 cut(s)	270
HpyCH4III	ACNGT	3 cut(s)	101, 298, 731
HpyCH4IV	ACGT	2 cut(s)	495, 606
HpyCH4V	TGCA	3 cut(s)	55, 59, 75
HpyF10VI	GCNNNNNNNGC	1 cut(s)	450
HpyF3I	CTNAG	1 cut(s)	514
HpySE526I	ACGT	2 cut(s)	495, 606
Hsp92II	CATG	5 cut(s)	59, 92, 489, 508, 586
Kpn2I	TCCGGA	1 cut(s)	637
KspAI	GTTAAC	1 cut(s)	208
Kzo9I	GATC	3 cut(s)	110, 232, 317
LmnI	GCTCC	2 cut(s)	192, 407
Lsp1109I	GCAGC	2 cut(s)	386, 605
LweI	GCATC	2 cut(s)	68, 701
MaeII	ACGT	2 cut(s)	495, 606
MaeIII	GTNAC	6 cut(s)	292, 677, 686, 725, 731, 770
MalI	GATC	3 cut(s)	112, 234, 319
MboI	GATC	3 cut(s)	110, 232, 317
MboII	GAAGA	4 cut(s)	31, 239, 663, 761
MflI	RGATCY	1 cut(s)	232
MluCI	AATT	2 cut(s)	237, 268
MlyI	GAGTC	1 cut(s)	314
MnlI	CCTC	4 cut(s)	113, 383, 415, 624
Mph1103I	ATGCAT	1 cut(s)	61
MroI	TCCGGA	1 cut(s)	637
MroXI	GAANNNNTTC	1 cut(s)	781
MseI	TTAA	5 cut(s)	152, 170, 207, 267, 273
MslI	CAYNNNNRTG	1 cut(s)	153
MspA1I	CMGCKG	1 cut(s)	596
MspI	CCGG	6 cut(s)	252, 395, 524, 576, 638, 684
MspR9I	CCNGG	4 cut(s)	252, 396, 576, 577
MvnI	CGCG	1 cut(s)	444
MwoI	GCNNNNNNNGC	1 cut(s)	450
NciI	CCSGG	4 cut(s)	252, 396, 576, 577
NdeII	GATC	3 cut(s)	110, 232, 317
NlaIII	CATG	5 cut(s)	59, 92, 489, 508, 586
NmuCI	GTSAC	3 cut(s)	292, 686, 725
NsiI	ATGCAT	1 cut(s)	61
NspI	RCATGY	3 cut(s)	59, 92, 508
PaeI	GCATGC	1 cut(s)	59
PciI	ACATGT	2 cut(s)	88, 504
PdmI	GAANNNNTTC	1 cut(s)	781
PfeI	GAWTC	6 cut(s)	160, 244, 518, 537, 571, 758
PfoI	TCCNGGA	1 cut(s)	250
PkrI	GCNGC	2 cut(s)	401, 595
PleI	GAGTC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	313
PscI	ACATGT	2 cut(s)	88, 504
PspPI	GGNCC	2 cut(s)	392, 434
PstNI	CAGNNNCTG	1 cut(s)	596
PsuI	RGATCY	1 cut(s)	232
PvuII	CAGCTG	1 cut(s)	596
RsaI	GTAC	3 cut(s)	326, 447, 741
RsaNI	GTAC	3 cut(s)	325, 446, 740
RseI	CAYNNNNRTG	1 cut(s)	153
SaqAI	TTAA	5 cut(s)	152, 170, 207, 267, 273
SatI	GCNGC	2 cut(s)	400, 594
Sau3AI	GATC	3 cut(s)	110, 232, 317
Sau96I	GGNCC	2 cut(s)	392, 434
SchI	GAGTC	1 cut(s)	314
ScrFI	CCNGG	4 cut(s)	252, 396, 576, 577
SetI	ASST	6 cut(s)	316, 432, 498, 598, 609, 635
SfaNI	GCATC	2 cut(s)	68, 701
SinI	GGWCC	2 cut(s)	392, 434
SmaI	CCCGGG	1 cut(s)	577
SmiMI	CAYNNNNRTG	1 cut(s)	153
SphI	GCATGC	1 cut(s)	59
Sse9I	AATT	2 cut(s)	237, 268
SsiI	CCGC	4 cut(s)	201, 285, 442, 714
StyD4I	CCNGG	4 cut(s)	250, 394, 574, 575
TaaI	ACNGT	3 cut(s)	101, 298, 731
TaiI	ACGT	2 cut(s)	498, 609
TaqI	TCGA	1 cut(s)	316
TasI	AATT	2 cut(s)	237, 268
TatI	WGTACW	1 cut(s)	324
TfiI	GAWTC	6 cut(s)	160, 244, 518, 537, 571, 758
Tru1I	TTAA	5 cut(s)	152, 170, 207, 267, 273
Tru9I	TTAA	5 cut(s)	152, 170, 207, 267, 273
TscAI	CASTG	2 cut(s)	704, 751
TseFI	GTSAC	3 cut(s)	292, 686, 725
TseI	GCWGC	2 cut(s)	399, 593
Tsp45I	GTSAC	3 cut(s)	292, 686, 725
TspDTI	ATGAA	3 cut(s)	474, 599, 771
TspGWI	ACGGA	5 cut(s)	402, 575, 723, 775, 789
TspMI	CCCGGG	1 cut(s)	575
TspRI	CASTG	2 cut(s)	704, 751
VpaK11BI	GGWCC	2 cut(s)	392, 434
XceI	RCATGY	3 cut(s)	59, 92, 508
XmaI	CCCGGG	1 cut(s)	575
XmnI	GAANNNNTTC	1 cut(s)	781
Zsp2I	ATGCAT	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.