Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0007095

Physical Location & Seq

Genomic Coordinates Forward (+)

2347482 .. 2350455

Gene Structure 2974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G023800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGACTGTCAAAATGCAAAACAAGCCTTGTTTACTTCTTTTCTTAGTTCTCATTCTTTCTTGCTTCATAGCTCAAATCCTTGGGAACAAGCAATCACAAGCACTTGCTCAACTTTTCAAGTCCAAGTTGAAGGAAGGCTCAGGCATCGACACGAGCCAATTCGAGGCAATTCTTCACGCCAATGGAACCAAAATTCATCCTCAGGAGGGGTTGAAGGAGAAGGACAGGATTGATATCTTGCCTGGACAACCCCATGTGAATTTCTCTCAGTATGGTGGGTATGTTACAGTGGATAAAGAAGCAGGTCGTGCATTCTTTTACTATTTTGCTGAAGCAGAGAAGGCTAAGGATTCCTCACCTCTTCTTCTATGGCTCAATGGAGGACCTGGATGTTCTTCTCTTGCCTACGGAGCAATGCTAGAGCTTGGACCGTTCCGAATCCACAGCGATGGAAAAACACTTTACCAAAACAAATTTTCATGGAACTATGCCGCTAATGTTTTGTTCCTTGAGTCCCCTGCCGGGGTGGGATTTTCGTACTCGAATAAAACATCTGATTATGATGCCAACGGGGATAGAAGAACAGCTGCAGATAATTATGTGTTTTTGGTGAATTGGTTGGAGAGATTTCCAGAACACAAGGACAGAGAGTTCTATATTTCTGGTGAAAGCTATGCAGGGCATTATGTACCTCAACTTGCACACACTATTCTTTACCATAATAAGAGGGCTAACAAGACAATTATCAACCTCAAGGGCATAATGGTAATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATTGTGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

273

Amino Acids

30.39

Weight (kDa)

8.77

Isoelectric Point (pI)

43.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52020 AT3G56540 AT3G63470
fragaria_vesca	FvH4_7g01760 FvH4_7g01760 FvH4_7g01760 FvH4_7g01760
malus_domestica	MD02G1300900.v1.1 MD07G1023100.v1.1
prunus_persica	Prupe.2G023700_v2.0.a1 Prupe.2G023700_v2.0.a1 Prupe.2G023800_v2.0.a1 Prupe.2G023900_v2.0.a1
pyrus_communis	pycom02g25260 pycom07g01750
rosa_chinensis	RchiOBHm_Chr1g0318331
rosa_laevigata	RLG00000030544
rosa_multiflora	Rmu_sc0003936.1_g000012
rosa_roxburghii	Rroxscaffold_4G00329330
rosa_rugosa	Rorug01G0020400
rosa_samantha	Rh1AG032500 Rh1BG028100 Rh1CG031000 Rh1DG038600
rosa_wichuraiana	Rw1G002600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	293
AciI	CCGC	1 cut(s)	492
AcsI	RAATTY	3 cut(s)	192, 259, 473
AcuI	CTGAAG	1 cut(s)	351
AfaI	GTAC	2 cut(s)	539, 690
AfiI	CCNNNNNNNGG	4 cut(s)	163, 206, 522, 523
AgsI	TTSAA	3 cut(s)	118, 130, 214
AjnI	CCWGG	2 cut(s)	241, 385
AloI	GAACNNNNNNTCC	2 cut(s)	635, 667
AluBI	AGCT	4 cut(s)	71, 424, 587, 672
AluI	AGCT	4 cut(s)	71, 424, 587, 672
ApeKI	GCWGC	1 cut(s)	587
ApoI	RAATTY	3 cut(s)	192, 259, 473
AspS9I	GGNCC	2 cut(s)	383, 428
AsuC2I	CCSGG	1 cut(s)	523
AsuHPI	GGTGA	3 cut(s)	348, 622, 677
AvaII	GGWCC	2 cut(s)	383, 428
AxyI	CCTNAGG	1 cut(s)	201
BauI	CACGAG	1 cut(s)	151
BbvI	GCAGC	1 cut(s)	574
BccI	CCATC	1 cut(s)	443
BciT130I	CCWGG	2 cut(s)	243, 387
BcnI	CCSGG	1 cut(s)	523
BfaI	CTAG	1 cut(s)	419
BfmI	CTRYAG	1 cut(s)	588
BfuAI	ACCTGC	1 cut(s)	293
BisI	GCNGC	2 cut(s)	492, 588
BlsI	GCNGC	2 cut(s)	493, 589
Bme1390I	CCNGG	3 cut(s)	243, 387, 523
Bme18I	GGWCC	2 cut(s)	383, 428
BmgT120I	GGNCC	2 cut(s)	383, 428
BmiI	GGNNCC	1 cut(s)	187
BmrFI	CCNGG	3 cut(s)	243, 387, 523
BmsI	GCATC	2 cut(s)	153, 553
Bpu10I	CCTNAGC	2 cut(s)	139, 345
BpuEI	CTTGAG	2 cut(s)	530, 737
BpuMI	CCSGG	1 cut(s)	523
BsaBI	GATNNNNATC	1 cut(s)	233
BsaJI	CCNNGG	2 cut(s)	79, 522
Bsc4I	CCNNNNNNNGG	4 cut(s)	163, 206, 522, 523
Bse21I	CCTNAGG	1 cut(s)	201
Bse3DI	GCAATG	1 cut(s)	420
Bse8I	GATNNNNATC	1 cut(s)	233
BseBI	CCWGG	2 cut(s)	243, 387
BseDI	CCNNGG	2 cut(s)	79, 522
BseGI	GGATG	2 cut(s)	196, 395
BseJI	GATNNNNATC	1 cut(s)	233
BseLI	CCNNNNNNNGG	4 cut(s)	163, 206, 522, 523
BseMI	GCAATG	1 cut(s)	420
BseMII	CTCAG	3 cut(s)	153, 215, 281
BseXI	GCAGC	1 cut(s)	574
BsiSI	CCGG	1 cut(s)	522
BslFI	GGGAC	1 cut(s)	499
BslI	CCNNNNNNNGG	4 cut(s)	163, 206, 522, 523
BsmFI	GGGAC	1 cut(s)	499
BsmI	GAATGC	1 cut(s)	311
BspACI	CCGC	1 cut(s)	492
BspCNI	CTCAG	3 cut(s)	152, 214, 280
BspLI	GGNNCC	1 cut(s)	187
BspMAI	CTGCAG	1 cut(s)	592
BspMI	ACCTGC	1 cut(s)	293
BsrDI	GCAATG	1 cut(s)	420
BssECI	CCNNGG	2 cut(s)	79, 522
BssSI	CACGAG	1 cut(s)	151
BssT1I	CCWWGG	1 cut(s)	79
Bst2BI	CACGAG	1 cut(s)	151
Bst2UI	CCWGG	2 cut(s)	243, 387
Bst4CI	ACNGT	3 cut(s)	7, 289, 432
Bst6I	CTCTTC	1 cut(s)	366
BstAPI	GCANNNNNTGC	1 cut(s)	308
BstDEI	CTNAG	5 cut(s)	43, 139, 201, 267, 345
BstF5I	GGATG	2 cut(s)	196, 395
BstMWI	GCNNNNNNNGC	4 cut(s)	22, 308, 341, 410
BstNI	CCWGG	2 cut(s)	243, 387
BstSCI	CCNGG	3 cut(s)	241, 385, 521
BstSFI	CTRYAG	1 cut(s)	588
BstV1I	GCAGC	1 cut(s)	574
BstXI	CCANNNNNNTGG	1 cut(s)	449
Bsu36I	CCTNAGG	1 cut(s)	201
BtgZI	GCGATG	1 cut(s)	462
BtsCI	GGATG	2 cut(s)	196, 395
BtsIMutI	CAGTG	1 cut(s)	294
BveI	ACCTGC	1 cut(s)	293
Cfr13I	GGNCC	2 cut(s)	383, 428
Csp6I	GTAC	2 cut(s)	538, 689
CviAII	CATG	2 cut(s)	254, 480
CviQI	GTAC	2 cut(s)	538, 689
DdeI	CTNAG	5 cut(s)	43, 139, 201, 267, 345
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
Eco130I	CCWWGG	1 cut(s)	79
Eco32I	GATATC	1 cut(s)	235
Eco47I	GGWCC	2 cut(s)	383, 428
Eco57I	CTGAAG	1 cut(s)	351
Eco81I	CCTNAGG	1 cut(s)	201
EcoO109I	RGGNCCY	1 cut(s)	383
EcoRII	CCWGG	2 cut(s)	241, 385
EcoRV	GATATC	1 cut(s)	235
EcoT14I	CCWWGG	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	79
FaeI	CATG	2 cut(s)	257, 483
FaqI	GGGAC	1 cut(s)	499
FatI	CATG	2 cut(s)	253, 479
Fnu4HI	GCNGC	2 cut(s)	492, 588
FokI	GGATG	2 cut(s)	183, 402
Fsp4HI	GCNGC	2 cut(s)	492, 588
FspBI	CTAG	1 cut(s)	419
GluI	GCNGC	2 cut(s)	492, 588
HapII	CCGG	1 cut(s)	522
Hin1II	CATG	2 cut(s)	257, 483
HinfI	GANTC	3 cut(s)	350, 438, 512
HpaII	CCGG	1 cut(s)	522
HphI	GGTGA	3 cut(s)	348, 622, 677
Hpy166II	GTNNAC	1 cut(s)	32
Hpy188I	TCNGA	2 cut(s)	437, 556
Hpy188III	TCNNGA	2 cut(s)	203, 632
Hpy8I	GTNNAC	1 cut(s)	32
HpyAV	CCTTC	5 cut(s)	124, 128, 208, 214, 334
HpyCH4III	ACNGT	3 cut(s)	7, 289, 432
HpyCH4V	TGCA	5 cut(s)	16, 311, 590, 677, 701
HpyF10VI	GCNNNNNNNGC	4 cut(s)	22, 308, 341, 410
HpyF3I	CTNAG	5 cut(s)	43, 139, 201, 267, 345
Hsp92II	CATG	2 cut(s)	257, 483
LmnI	GCTCC	1 cut(s)	410
Lsp1109I	GCAGC	1 cut(s)	574
LweI	GCATC	2 cut(s)	153, 553
MaeI	CTAG	1 cut(s)	419
MaeIII	GTNAC	1 cut(s)	283
MboII	GAAGA	5 cut(s)	164, 353, 356, 387, 591
MluCI	AATT	9 cut(s)	158, 168, 192, 259, 473, 595, 613, 741, 768
MlyI	GAGTC	1 cut(s)	521
MmeI	TCCRAC	1 cut(s)	600
MnlI	CCTC	9 cut(s)	157, 199, 210, 364, 369, 374, 702, 720, 761
MslI	CAYNNNNRTG	2 cut(s)	180, 447
MspA1I	CMGCKG	1 cut(s)	587
MspI	CCGG	1 cut(s)	522
MspR9I	CCNGG	3 cut(s)	243, 387, 523
Mva1269I	GAATGC	1 cut(s)	311
MvaI	CCWGG	2 cut(s)	243, 387
MwoI	GCNNNNNNNGC	4 cut(s)	22, 308, 341, 410
NciI	CCSGG	1 cut(s)	523
NlaIII	CATG	2 cut(s)	257, 483
NlaIV	GGNNCC	1 cut(s)	187
PctI	GAATGC	1 cut(s)	311
PfeI	GAWTC	2 cut(s)	350, 438
PkrI	GCNGC	2 cut(s)	493, 589
PleI	GAGTC	1 cut(s)	520
PpsI	GAGTC	1 cut(s)	520
PpuMI	RGGWCCY	1 cut(s)	383
Psp5II	RGGWCCY	1 cut(s)	383
Psp6I	CCWGG	2 cut(s)	241, 385
PspGI	CCWGG	2 cut(s)	241, 385
PspN4I	GGNNCC	1 cut(s)	187
PspPI	GGNCC	2 cut(s)	383, 428
PspPPI	RGGWCCY	1 cut(s)	383
PstI	CTGCAG	1 cut(s)	592
PvuII	CAGCTG	1 cut(s)	587
RsaI	GTAC	2 cut(s)	539, 690
RsaNI	GTAC	2 cut(s)	538, 689
RseI	CAYNNNNRTG	2 cut(s)	180, 447
SatI	GCNGC	2 cut(s)	492, 588
Sau96I	GGNCC	2 cut(s)	383, 428
SchI	GAGTC	1 cut(s)	521
ScrFI	CCNGG	3 cut(s)	243, 387, 523
SetI	ASST	9 cut(s)	73, 307, 361, 388, 426, 589, 674, 694, 753
SfaNI	GCATC	2 cut(s)	153, 553
SfcI	CTRYAG	1 cut(s)	588
SinI	GGWCC	2 cut(s)	383, 428
SmiMI	CAYNNNNRTG	2 cut(s)	180, 447
SmlI	CTYRAG	2 cut(s)	509, 752
SmoI	CTYRAG	2 cut(s)	509, 752
Sse9I	AATT	9 cut(s)	158, 168, 192, 259, 473, 595, 613, 741, 768
SsiI	CCGC	1 cut(s)	492
SspMI	CTAG	1 cut(s)	419
StyD4I	CCNGG	3 cut(s)	241, 385, 521
StyI	CCWWGG	1 cut(s)	79
TaaI	ACNGT	3 cut(s)	7, 289, 432
TaqI	TCGA	3 cut(s)	147, 162, 542
TasI	AATT	9 cut(s)	158, 168, 192, 259, 473, 595, 613, 741, 768
TauI	GCSGC	1 cut(s)	494
TfiI	GAWTC	2 cut(s)	350, 438
TscAI	CASTG	1 cut(s)	294
TseI	GCWGC	1 cut(s)	587
TspDTI	ATGAA	3 cut(s)	55, 185, 468
TspGWI	ACGGA	1 cut(s)	423
TspRI	CASTG	1 cut(s)	294
VpaK11BI	GGWCC	2 cut(s)	383, 428
XapI	RAATTY	3 cut(s)	192, 259, 473
XspI	CTAG	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.