MD02G1300900.v1.1

Belongs to the peptidase S10 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Reverse (-)
35558207 .. 35564746
6540 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1300900.v1.1.491

Sequence Viewer

Length: 1509 bp
ATGAATACAATCAAAATGCAAACAATTAGGCCTTGTTTGGCACTTTTCTCTCTTCTCGTTCTTTCTTGCTTCGTAGCTCAAATCCATGGAAGCAAGCAATCAGAAGCACTTTCACGGCTCTACAAGTCCAAATTGAAGAACGCCGCCCCCATCGACAAGAGCCCTTTCGTGGCGATTTTTCACGCAAACACAACAAAAACTCATACTCAGGAGGGATTGAAGGAGAAGGATAGGATCGATAAGTTGCCTGGACAACCCAAAGTGAAATTCTCTCAGTATGGCGGGTACGTTACGGTGGATAAAAAAGCCGGTCGTGCACTATTTTACTACTTAGTTGAAGCTGAGAAAGCTAAGGATTCTTCACCTCTTCTTCTATGGCTCAATGGAGGACCTGGTTGTTCTTCTCTTGCCTATGGAGCAATGCTCGAGCTTGGACCGTTCCGAATCCACAGCGATGGAAAAACACTTTACAGAAACAGATTTTCATGGAATTATGCTGCCAATGTGTTGTTCCTTGAGTCTCCTGCTGGGGTGGGGTTTTCTTACTCAAATAGAACATCTGATTACGATGCAAGCGGGGATAGAAACACAGCTGCAGATAATTATGTATTTTTGGTGAACTGGTTGGAGAGGTTTCCTGAATACAAGGGCAGGGAGTTTTATATTTCTGGGGAAAGCTATGCAGGGCATTATGTACCTCAACTTGCACATACCATTCTCAACCATAATAAAAGGGCAAACAAGACCATTATCAACCTCAAGGGCATTATAATTGGGAATGCAGTGATCAATGATGAAACTGATTCAAAAGGAATGTACGACTACCTTGCGAGCCATGCTCTGATTTCAGATAAAACTGCCAACAATATAAACAAGTACTGTAACTTTGCAGCTAATGCCACCACTCAACCTAAGGAGTGCAATGATGCCACTGATGCTGCAAATAAAGATACCTACTACGTCGATATTTATAACATCTATGCCCCTTTATGCTTGTCTACGAACCTCACTGCAAAACCCAAAAGGACTTCAATTTTCGAATTTGATCCGTGTAGTGAGTACTATGCATATGGTTATTTGAATCGTCCTGACGTCCAACAAGCTCTCCATGCCAATGTCACCAAACTGTCACACGACTGGGAACCATGTAGTGATATAATCACACACTGGGGCGATAGCGCATCAACCGTACTACCTCTTTTACATGAGTTCCTGGATAATGGACTTCGAGTGTGGATTTTCAGTGGCGACATTGATGGGAGGGTACCAGTGACTTCAACAAAGTATTCTATTGACAAGATGAATCTTGCAGTAAAGACTGAGTGGCATGCTTGGTTCCTTAGTGGAGAGGTTGGTGGGTACACACAAGTGTACGAGGGAGGCCTAACATTTGCTACAGTGAGAGAGGCAGGGCATCAAGTTCCAAGCTATCAGCCTGCAAGAGGACTTTCTCTCATCAAGCACTTCCTTGATGGCACACCTCTTCCTGATACTACAAGATATAACTAA

Protein Analysis

503

Amino Acids

56.17

Weight (kDa)

7.96

Isoelectric Point (pI)

34.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 83 - 492 2.6e-144 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 770, 972
AatII GACGTC 1 cut(s) 1095
Acc65I GGTACC 1 cut(s) 1264
AccB1I GGYRCC 1 cut(s) 1264
AccI GTMKAC 1 cut(s) 998
AciI CCGC 3 cut(s) 144, 282, 576
AclWI GGATC 2 cut(s) 242, 1040
AcsI RAATTY 2 cut(s) 266, 1040
AcyI GRCGYC 1 cut(s) 1092
AfaI GTAC 9 cut(s) 287, 696, 818, 878, 1061, 1191, 1266, 1361, 1373
AfiI CCNNNNNNNGG 2 cut(s) 169, 1442
AgsI TTSAA 7 cut(s) 136, 220, 338, 807, 1032, 1081, 1278
AjnI CCWGG 3 cut(s) 247, 391, 1212
AjuI GAANNNNNNNTTGG 4 cut(s) 251, 283, 494, 526
AleI CACNNNNGTG 1 cut(s) 1367
AluBI AGCT 9 cut(s) 77, 341, 350, 430, 593, 678, 893, 1103, 1428
AluI AGCT 9 cut(s) 77, 341, 350, 430, 593, 678, 893, 1103, 1428
Alw21I GWGCWC 1 cut(s) 319
Alw26I GTCTC 1 cut(s) 525
Alw44I GTGCAC 1 cut(s) 315
AlwI GGATC 2 cut(s) 242, 1040
Ama87I CYCGRG 1 cut(s) 425
AoxI GGCC 2 cut(s) 29, 1381
ApaLI GTGCAC 1 cut(s) 315
ApeKI GCWGC 4 cut(s) 497, 593, 890, 938
ApoI RAATTY 2 cut(s) 266, 1040
Asp718I GGTACC 1 cut(s) 1264
AspLEI GCGC 1 cut(s) 1181
AspS9I GGNCC 2 cut(s) 389, 434
AsuHPI GGTGA 3 cut(s) 354, 628, 1111
AsuII TTCGAA 1 cut(s) 1038
AvaI CYCGRG 1 cut(s) 425
AvaII GGWCC 2 cut(s) 389, 434
AxyI CCTNAGG 1 cut(s) 912
BaeGI GKGCMC 1 cut(s) 319
BanI GGYRCC 1 cut(s) 1264
BanII GRGCYC 1 cut(s) 164
Bbv12I GWGCWC 1 cut(s) 319
BbvI GCAGC 4 cut(s) 484, 580, 902, 925
BccI CCATC 4 cut(s) 158, 449, 1250, 1466
BceAI ACGGC 1 cut(s) 131
BcgI CGANNNNNNTGC 2 cut(s) 809, 843
BciT130I CCWGG 3 cut(s) 249, 393, 1214
BclI TGATCA 1 cut(s) 786
BcoDI GTCTC 1 cut(s) 525
BfmI CTRYAG 2 cut(s) 594, 1395
BisI GCNGC 5 cut(s) 144, 498, 594, 891, 939
BlsI GCNGC 5 cut(s) 145, 499, 595, 892, 940
BmcAI AGTACT 2 cut(s) 878, 1061
Bme1390I CCNGG 3 cut(s) 249, 393, 1214
Bme18I GGWCC 2 cut(s) 389, 434
BmeT110I CYCGRG 1 cut(s) 425
BmgT120I GGNCC 2 cut(s) 389, 434
BmiI GGNNCC 3 cut(s) 1143, 1266, 1337
BmrFI CCNGG 3 cut(s) 249, 393, 1214
BmrI ACTGGG 2 cut(s) 1147, 1177
BmsI GCATC 5 cut(s) 559, 916, 925, 1190, 1423
BmuI ACTGGG 2 cut(s) 1147, 1177
BplI GAGNNNNNCTC 4 cut(s) 408, 440, 823, 855
Bpu10I CCTNAGC 1 cut(s) 351
Bpu14I TTCGAA 1 cut(s) 1038
BpuEI CTTGAG 2 cut(s) 536, 743
Bsa29I ATCGAT 1 cut(s) 237
BsaHI GRCGYC 1 cut(s) 1092
BsaJI CCNNGG 1 cut(s) 85
BsaXI ACNNNNNCTCC 2 cut(s) 1089, 1119
Bsc4I CCNNNNNNNGG 2 cut(s) 169, 1442
Bse118I RCCGGY 1 cut(s) 308
Bse1I ACTGG 4 cut(s) 626, 1142, 1172, 1268
Bse21I CCTNAGG 1 cut(s) 912
Bse3DI GCAATG 2 cut(s) 426, 928
BseBI CCWGG 3 cut(s) 249, 393, 1214
BseCI ATCGAT 1 cut(s) 237
BseDI CCNNGG 1 cut(s) 85
BseLI CCNNNNNNNGG 2 cut(s) 169, 1442
BseMI GCAATG 2 cut(s) 426, 928
BseMII CTCAG 4 cut(s) 221, 287, 333, 1311
BseNI ACTGG 4 cut(s) 626, 1142, 1172, 1268
BseSI GKGCMC 1 cut(s) 319
BseXI GCAGC 4 cut(s) 484, 580, 902, 925
BseYI CCCAGC 1 cut(s) 527
Bsh1285I CGRYCG 1 cut(s) 313
BshFI GGCC 2 cut(s) 31, 1383
BshNI GGYRCC 1 cut(s) 1264
BshVI ATCGAT 1 cut(s) 237
BsiEI CGRYCG 1 cut(s) 313
BsiHKAI GWGCWC 1 cut(s) 319
BsiHKCI CYCGRG 1 cut(s) 425
BsiSI CCGG 1 cut(s) 309
BslI CCNNNNNNNGG 2 cut(s) 169, 1442
BsmAI GTCTC 1 cut(s) 525
BsmI GAATGC 1 cut(s) 784
BsnI GGCC 2 cut(s) 31, 1383
BsoBI CYCGRG 1 cut(s) 425
Bsp119I TTCGAA 1 cut(s) 1038
Bsp1286I GDGCHC 2 cut(s) 164, 319
Bsp143I GATC 3 cut(s) 234, 786, 1045
Bsp19I CCATGG 1 cut(s) 85
BspACI CCGC 3 cut(s) 144, 282, 576
BspANI GGCC 2 cut(s) 31, 1383
BspCNI CTCAG 4 cut(s) 220, 286, 334, 1312
BspDI ATCGAT 1 cut(s) 237
BspLI GGNNCC 3 cut(s) 1143, 1266, 1337
BspMAI CTGCAG 1 cut(s) 598
BspPI GGATC 2 cut(s) 242, 1040
BspT104I TTCGAA 1 cut(s) 1038
BspT107I GGYRCC 1 cut(s) 1264
BsrDI GCAATG 2 cut(s) 426, 928
BsrFI RCCGGY 1 cut(s) 308
BsrI ACTGG 4 cut(s) 626, 1142, 1172, 1268
BssAI RCCGGY 1 cut(s) 308
BssECI CCNNGG 1 cut(s) 85
BssMI GATC 3 cut(s) 234, 786, 1045
BssNI GRCGYC 1 cut(s) 1092
BssT1I CCWWGG 1 cut(s) 85
Bst2UI CCWGG 3 cut(s) 249, 393, 1214
Bst4CI ACNGT 6 cut(s) 295, 438, 881, 1128, 1189, 1399
Bst6I CTCTTC 3 cut(s) 57, 372, 1488
BstACI GRCGYC 1 cut(s) 1092
BstAPI GCANNNNNTGC 1 cut(s) 896
BstBI TTCGAA 1 cut(s) 1038
BstC8I GCNNGC 5 cut(s) 95, 574, 832, 1329, 1437
BstDEI CTNAG 8 cut(s) 207, 273, 331, 342, 351, 912, 1320, 1340
BstDSI CCRYGG 1 cut(s) 85
BstENI CCTNNNNNAGG 1 cut(s) 1440
BstHHI GCGC 1 cut(s) 1181
BstKTI GATC 3 cut(s) 237, 789, 1048
BstMAI GTCTC 1 cut(s) 525
BstMBI GATC 3 cut(s) 234, 786, 1045
BstMCI CGRYCG 1 cut(s) 313
BstMWI GCNNNNNNNGC 7 cut(s) 314, 347, 416, 836, 896, 935, 1109
BstNI CCWGG 3 cut(s) 249, 393, 1214
BstNSI RCATGY 1 cut(s) 1331
BstSCI CCNGG 3 cut(s) 247, 391, 1212
BstSFI CTRYAG 2 cut(s) 594, 1395
BstSLI GKGCMC 1 cut(s) 319
BstV1I GCAGC 4 cut(s) 484, 580, 902, 925
BstXI CCANNNNNNTGG 1 cut(s) 455
Bsu15I ATCGAT 1 cut(s) 237
Bsu36I CCTNAGG 1 cut(s) 912
BsuRI GGCC 2 cut(s) 31, 1383
BsuTUI ATCGAT 1 cut(s) 237
BtgI CCRYGG 1 cut(s) 85
BtgZI GCGATG 1 cut(s) 468
BtsI GCAGTG 2 cut(s) 789, 1008
BtsIMutI CAGTG 7 cut(s) 789, 930, 1008, 1165, 1249, 1275, 1404
Cac8I GCNNGC 5 cut(s) 95, 574, 832, 1329, 1437
CfoI GCGC 1 cut(s) 1181
Cfr10I RCCGGY 1 cut(s) 308
Cfr13I GGNCC 2 cut(s) 389, 434
ClaI ATCGAT 1 cut(s) 237
CsiI ACCWGGT 1 cut(s) 391
Csp6I GTAC 9 cut(s) 286, 695, 817, 877, 1060, 1190, 1265, 1360, 1372
CviAII CATG 7 cut(s) 86, 486, 836, 1109, 1146, 1205, 1328
CviQI GTAC 9 cut(s) 286, 695, 817, 877, 1060, 1190, 1265, 1360, 1372
DdeI CTNAG 8 cut(s) 207, 273, 331, 342, 351, 912, 1320, 1340
DpnI GATC 3 cut(s) 236, 788, 1047
DpnII GATC 3 cut(s) 234, 786, 1045
Eam1104I CTCTTC 3 cut(s) 57, 372, 1488
EarI CTCTTC 3 cut(s) 57, 372, 1488
Eco130I CCWWGG 1 cut(s) 85
Eco147I AGGCCT 2 cut(s) 31, 1383
Eco24I GRGCYC 1 cut(s) 164
Eco47I GGWCC 2 cut(s) 389, 434
Eco81I CCTNAGG 1 cut(s) 912
Eco88I CYCGRG 1 cut(s) 425
EcoNI CCTNNNNNAGG 1 cut(s) 1440
EcoO109I RGGNCCY 1 cut(s) 389
EcoRII CCWGG 3 cut(s) 247, 391, 1212
EcoT14I CCWWGG 1 cut(s) 85
EcoT22I ATGCAT 1 cut(s) 1069
EcoT38I GRGCYC 1 cut(s) 164
ErhI CCWWGG 1 cut(s) 85
FaeI CATG 7 cut(s) 89, 489, 839, 1112, 1149, 1208, 1331
FatI CATG 7 cut(s) 85, 485, 835, 1108, 1145, 1204, 1327
FauI CCCGC 2 cut(s) 275, 569
FauNDI CATATG 1 cut(s) 1069
FbaI TGATCA 1 cut(s) 786
FblI GTMKAC 1 cut(s) 998
Fnu4HI GCNGC 5 cut(s) 144, 498, 594, 891, 939
FriOI GRGCYC 1 cut(s) 164
Fsp4HI GCNGC 5 cut(s) 144, 498, 594, 891, 939
GlaI GCGC 1 cut(s) 1180
GluI GCNGC 5 cut(s) 144, 498, 594, 891, 939
GsaI CCCAGC 1 cut(s) 531
HaeIII GGCC 2 cut(s) 31, 1383
HapII CCGG 1 cut(s) 309
HhaI GCGC 1 cut(s) 1181
Hin1I GRCGYC 1 cut(s) 1092
Hin1II CATG 7 cut(s) 89, 489, 839, 1112, 1149, 1208, 1331
Hin6I GCGC 1 cut(s) 1179
HinP1I GCGC 1 cut(s) 1179
HinfI GANTC 6 cut(s) 356, 444, 518, 803, 1081, 1303
HpaII CCGG 1 cut(s) 309
HphI GGTGA 3 cut(s) 354, 628, 1111
Hpy166II GTNNAC 5 cut(s) 317, 619, 999, 1362, 1372
Hpy188I TCNGA 5 cut(s) 103, 443, 562, 843, 850
Hpy188III TCNNGA 4 cut(s) 209, 638, 1088, 1487
Hpy8I GTNNAC 5 cut(s) 317, 619, 999, 1362, 1372
Hpy99I CGWCG 1 cut(s) 965
HpyAV CCTTC 2 cut(s) 214, 220
HpyCH4III ACNGT 6 cut(s) 295, 438, 881, 1128, 1189, 1399
HpyCH4IV ACGT 3 cut(s) 288, 960, 1092
HpyF10VI GCNNNNNNNGC 7 cut(s) 314, 347, 416, 836, 896, 935, 1109
HpyF3I CTNAG 8 cut(s) 207, 273, 331, 342, 351, 912, 1320, 1340
HpySE526I ACGT 3 cut(s) 288, 960, 1092
Hsp92I GRCGYC 1 cut(s) 1092
Hsp92II CATG 7 cut(s) 89, 489, 839, 1112, 1149, 1208, 1331
HspAI GCGC 1 cut(s) 1179
KpnI GGTACC 1 cut(s) 1268
Ksp22I TGATCA 1 cut(s) 786
Kzo9I GATC 3 cut(s) 234, 786, 1045
LmnI GCTCC 1 cut(s) 416
Lsp1109I GCAGC 4 cut(s) 484, 580, 902, 925
LweI GCATC 5 cut(s) 559, 916, 925, 1190, 1423
MabI ACCWGGT 1 cut(s) 391
MaeII ACGT 3 cut(s) 288, 960, 1092
MaeIII GTNAC 5 cut(s) 289, 881, 1117, 1128, 1270
MalI GATC 3 cut(s) 236, 788, 1047
MboI GATC 3 cut(s) 234, 786, 1045
MboII GAAGA 7 cut(s) 44, 148, 351, 359, 362, 393, 1475
MhlI GDGCHC 2 cut(s) 164, 319
MluCI AATT 8 cut(s) 24, 131, 266, 490, 601, 771, 1032, 1040
MlyI GAGTC 1 cut(s) 527
MmeI TCCRAC 2 cut(s) 606, 1120
Mph1103I ATGCAT 1 cut(s) 1069
MslI CAYNNNNRTG 3 cut(s) 453, 1113, 1367
MspA1I CMGCKG 1 cut(s) 593
MspI CCGG 1 cut(s) 309
MspR9I CCNGG 3 cut(s) 249, 393, 1214
Mva1269I GAATGC 1 cut(s) 784
MvaI CCWGG 3 cut(s) 249, 393, 1214
MwoI GCNNNNNNNGC 7 cut(s) 314, 347, 416, 836, 896, 935, 1109
NcoI CCATGG 1 cut(s) 85
NdeI CATATG 1 cut(s) 1069
NdeII GATC 3 cut(s) 234, 786, 1045
NlaIII CATG 7 cut(s) 89, 489, 839, 1112, 1149, 1208, 1331
NlaIV GGNNCC 3 cut(s) 1143, 1266, 1337
NmuCI GTSAC 3 cut(s) 1117, 1128, 1270
NsiI ATGCAT 1 cut(s) 1069
NspI RCATGY 1 cut(s) 1331
NspV TTCGAA 1 cut(s) 1038
OliI CACNNNNGTG 1 cut(s) 1367
PaeI GCATGC 1 cut(s) 1331
PaeR7I CTCGAG 1 cut(s) 425
PceI AGGCCT 2 cut(s) 31, 1383
PctI GAATGC 1 cut(s) 784
PfeI GAWTC 5 cut(s) 356, 444, 803, 1081, 1303
PfoI TCCNGGA 1 cut(s) 1212
PkrI GCNGC 5 cut(s) 145, 499, 595, 892, 940
PleI GAGTC 1 cut(s) 526
PpsI GAGTC 1 cut(s) 526
PpuMI RGGWCCY 1 cut(s) 389
PsiI TTATAA 2 cut(s) 770, 972
Psp5II RGGWCCY 1 cut(s) 389
Psp6I CCWGG 3 cut(s) 247, 391, 1212
PspFI CCCAGC 1 cut(s) 527
PspGI CCWGG 3 cut(s) 247, 391, 1212
PspN4I GGNNCC 3 cut(s) 1143, 1266, 1337
PspPI GGNCC 2 cut(s) 389, 434
PspPPI RGGWCCY 1 cut(s) 389
PspXI VCTCGAGB 1 cut(s) 425
PstI CTGCAG 1 cut(s) 598
PvuII CAGCTG 1 cut(s) 593
RsaI GTAC 9 cut(s) 287, 696, 818, 878, 1061, 1191, 1266, 1361, 1373
RsaNI GTAC 9 cut(s) 286, 695, 817, 877, 1060, 1190, 1265, 1360, 1372
RseI CAYNNNNRTG 3 cut(s) 453, 1113, 1367
SatI GCNGC 5 cut(s) 144, 498, 594, 891, 939
Sau3AI GATC 3 cut(s) 234, 786, 1045
Sau96I GGNCC 2 cut(s) 389, 434
ScaI AGTACT 2 cut(s) 878, 1061
SchI GAGTC 1 cut(s) 527
ScrFI CCNGG 3 cut(s) 249, 393, 1214
SduI GDGCHC 2 cut(s) 164, 319
SexAI ACCWGGT 1 cut(s) 391
SfaNI GCATC 5 cut(s) 559, 916, 925, 1190, 1423
SfcI CTRYAG 2 cut(s) 594, 1395
Sfr274I CTCGAG 1 cut(s) 425
SfuI TTCGAA 1 cut(s) 1038
SinI GGWCC 2 cut(s) 389, 434
SlaI CTCGAG 1 cut(s) 425
SmiMI CAYNNNNRTG 3 cut(s) 453, 1113, 1367
SmlI CTYRAG 3 cut(s) 425, 515, 758
SmoI CTYRAG 3 cut(s) 425, 515, 758
SphI GCATGC 1 cut(s) 1331
Sse9I AATT 8 cut(s) 24, 131, 266, 490, 601, 771, 1032, 1040
SseBI AGGCCT 2 cut(s) 31, 1383
SsiI CCGC 3 cut(s) 144, 282, 576
StuI AGGCCT 2 cut(s) 31, 1383
StyD4I CCNGG 3 cut(s) 247, 391, 1212
StyI CCWWGG 1 cut(s) 85
TaaI ACNGT 6 cut(s) 295, 438, 881, 1128, 1189, 1399
TaiI ACGT 3 cut(s) 291, 963, 1095
TaqI TCGA 6 cut(s) 153, 237, 426, 963, 1038, 1228
TasI AATT 8 cut(s) 24, 131, 266, 490, 601, 771, 1032, 1040
TatI WGTACW 2 cut(s) 876, 1059
TauI GCSGC 1 cut(s) 146
TfiI GAWTC 5 cut(s) 356, 444, 803, 1081, 1303
TscAI CASTG 7 cut(s) 789, 937, 1015, 1172, 1249, 1275, 1404
TseFI GTSAC 3 cut(s) 1117, 1128, 1270
TseI GCWGC 4 cut(s) 497, 593, 890, 938
Tsp45I GTSAC 3 cut(s) 1117, 1128, 1270
TspDTI ATGAA 4 cut(s) 17, 474, 810, 1316
TspGWI ACGGA 1 cut(s) 1038
TspRI CASTG 7 cut(s) 789, 937, 1015, 1172, 1249, 1275, 1404
VneI GTGCAC 1 cut(s) 315
VpaK11BI GGWCC 2 cut(s) 389, 434
XagI CCTNNNNNAGG 1 cut(s) 1440
XapI RAATTY 2 cut(s) 266, 1040
XceI RCATGY 1 cut(s) 1331
XhoI CTCGAG 1 cut(s) 425
XmiI GTMKAC 1 cut(s) 998
ZraI GACGTC 1 cut(s) 1093
ZrmI AGTACT 2 cut(s) 878, 1061
Zsp2I ATGCAT 1 cut(s) 1069
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.