Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007095

Physical Location & Seq

Genomic Coordinates Forward (+)

3332152 .. 3334114

Gene Structure 1963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0020400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1434 bp

ATGGCGCAACCAAACTCGGTGAAAATGGTGGAGATTTGCAGGGTGGCTCCAAAACTAGGCGCACCAGATCTGTTGTCCCTTCCTCTAACCTACTTTGACTCGCTCTTTCTAAGGTTTCCACCAGTACAACGCCTTTACTTCTATGAATTAACATCTTCTTCCTCTTCTTCTTCCACTAGTACTGATTCTGTAGTACTTGCCTATCTCAAAACCTCGCTCTCTCTCACTCTCAAACACTTTGTACCTCTCGCCGGAAACCTAACTTGGCCTCAAGACTCCCACACACCCCTTCTCAGCTATGTCCAAGGCGACGCCGTTTCACTCACAGTAGCTGAGTCCGATGCTGATAATTTCGACCACCTTTCGAGCAACAACGTCTTTCTCGAATCCAAAGCTTACCATCCACTTGTTCCCCAATTGGAGTCGTCTCATGAACGAACTGCAGCCATTGCATTGCAAATAACCCTATTTCATGGCCGTGGCTTCGCCATTGGAACAGCCATGCACCATGCAATCCTCGATGGCAAAACATCAATCTCATTCGTTAAGTCGTGGGCTCATGTATGCAGCAAACAGATTGAAAGTGGCTTGTCCATTGGATCAGATATTTCGTTACCAGAGAAGCTCAAGCCATTATATGATAGAACGGTTATCTATGATCCGACTGGGCACGGACTCGAATCCATCTACTTAAACGATTGGCAAAACTTGGATGGCCCCAACAACAGAAGCGTAAAGGTTTGGGAATTGAAAGCTCCACCAGATGACTCAGTTCGAAGCATCTTTGAGTTCACACGCGCACAGATACAAACGCTAAGGCAGATGGTACTAGAAAAGGTTTCTGATCCAGTACATCTCCATTTGTCAACGTTTTCTCTAGCTTGTGCTTACACTTGGGTTTGTTTAGTCAAGGCACAAGAAATAGAAGCCAACAAAGTTTCAGTTCAAGCCTTTAGCGTGGACTGTAGGTCTCGCTTGGACCCTCCGGTACCTGAAAACTATTTTGGAAATTGCATGATGGGTGTCATGGGGTTTGCCGAAGCAAAGGAGTTATTGGGTGAAGATGGGTTGGTTGTGGCGGTCACAGCAATTAGTGAAACTATAAAGGGTTTGGACAAGAATGGGGTTTTGAAAGGGGCCCACGAGGTTTACTTTTCGAAAATCAAGGACTTGCTTCAGGCTGAAGGGATATATTCTACTGCTGGTTCGCACCGATTTCAGATTTATGATACCAACTTTGGATGGGGTAGGCCGAAGAAAGTTGAGGTGGTTTCTATAGATAGGACCGGAGCGATTTCAGTCTCGGATTCCAAGAATGGTGGTGGAGGTATAGAGATTGGGGTGGTTTTGAAAAAAGATTTTATGGAAGCTTTTGCTTCTCTATTTGCCGAAGGATTTGGGGACTCATTTGGAAAGCACCGAGTCAGGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

477

Amino Acids

52.35

Weight (kDa)

6.02

Isoelectric Point (pI)

34.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	13 - 460	7.3e-53	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52020 AT3G56540 AT3G63470
fragaria_vesca	FvH4_7g01760 FvH4_7g01760 FvH4_7g01760 FvH4_7g01760
malus_domestica	MD02G1300900.v1.1 MD07G1023100.v1.1
prunus_persica	Prupe.2G023700_v2.0.a1 Prupe.2G023700_v2.0.a1 Prupe.2G023800_v2.0.a1 Prupe.2G023900_v2.0.a1
pyrus_communis	pycom02g25260 pycom07g01750
rosa_chinensis	RchiOBHm_Chr1g0318331
rosa_laevigata	RLG00000030544
rosa_multiflora	Rmu_sc0003936.1_g000012
rosa_roxburghii	Rroxscaffold_4G00329330
rosa_rugosa	Rorug01G0020400
rosa_samantha	Rh1AG032500 Rh1BG028100 Rh1CG031000 Rh1DG038600
rosa_wichuraiana	Rw1G002600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	988
AccB1I	GGYRCC	1 cut(s)	988
AccII	CGCG	1 cut(s)	798
AciI	CCGC	1 cut(s)	1079
AclI	AACGTT	1 cut(s)	869
AclWI	GGATC	3 cut(s)	607, 653, 839
AcoI	YGGCCR	1 cut(s)	475
AcuI	CTGAAG	2 cut(s)	1160, 1203
AcyI	GRCGYC	1 cut(s)	312
AfaI	GTAC	7 cut(s)	126, 181, 195, 243, 828, 852, 990
AfiI	CCNNNNNNNGG	3 cut(s)	56, 251, 1426
AgsI	TTSAA	5 cut(s)	581, 751, 947, 1132, 1351
AhdI	GACNNNNNGTC	1 cut(s)	967
AhlI	ACTAGT	1 cut(s)	176
AjuI	GAANNNNNNNTTGG	4 cut(s)	247, 279, 987, 1019
AluBI	AGCT	7 cut(s)	297, 332, 395, 625, 755, 881, 1370
AluI	AGCT	7 cut(s)	297, 332, 395, 625, 755, 881, 1370
Alw26I	GTCTC	3 cut(s)	432, 975, 1306
AlwI	GGATC	3 cut(s)	607, 653, 839
AlwNI	CAGNNNCTG	1 cut(s)	332
AoxI	GGCC	5 cut(s)	266, 475, 715, 1137, 1250
ApaI	GGGCCC	1 cut(s)	1141
ApeKI	GCWGC	2 cut(s)	443, 567
Asp718I	GGTACC	1 cut(s)	988
AspLEI	GCGC	3 cut(s)	7, 62, 800
AspS9I	GGNCC	5 cut(s)	716, 979, 1137, 1138, 1284
AsuHPI	GGTGA	2 cut(s)	31, 1070
AsuII	TTCGAA	2 cut(s)	775, 1157
AvaII	GGWCC	2 cut(s)	979, 1284
BaeGI	GKGCMC	2 cut(s)	672, 1141
BanI	GGYRCC	1 cut(s)	988
BanII	GRGCYC	2 cut(s)	559, 1141
BauI	CACGAG	1 cut(s)	1142
BbvI	GCAGC	2 cut(s)	455, 579
BccI	CCATC	8 cut(s)	408, 515, 692, 707, 817, 1012, 1058, 1236
BceAI	ACGGC	2 cut(s)	299, 462
BcoDI	GTCTC	3 cut(s)	432, 975, 1306
BcuI	ACTAGT	1 cut(s)	176
BfaI	CTAG	4 cut(s)	56, 177, 830, 878
BfmI	CTRYAG	4 cut(s)	189, 441, 964, 1275
BglII	AGATCT	1 cut(s)	67
BisI	GCNGC	2 cut(s)	444, 568
BlsI	GCNGC	2 cut(s)	445, 569
BmcAI	AGTACT	2 cut(s)	181, 195
Bme18I	GGWCC	2 cut(s)	979, 1284
BmeRI	GACNNNNNGTC	1 cut(s)	967
BmgT120I	GGNCC	5 cut(s)	716, 979, 1137, 1138, 1284
BmiI	GGNNCC	6 cut(s)	48, 718, 981, 990, 1138, 1139
BmrI	ACTGGG	1 cut(s)	675
BmsI	GCATC	2 cut(s)	331, 789
BmuI	ACTGGG	1 cut(s)	675
Bpu10I	CCTNAGC	1 cut(s)	815
Bpu14I	TTCGAA	2 cut(s)	775, 1157
BpuEI	CTTGAG	2 cut(s)	255, 611
BsaHI	GRCGYC	1 cut(s)	312
BsaI	GGTCTC	1 cut(s)	975
BsaJI	CCNNGG	2 cut(s)	304, 478
BsaWI	WCCGGW	2 cut(s)	985, 1286
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 251, 1426
Bse1I	ACTGG	3 cut(s)	122, 670, 848
Bse3DI	GCAATG	2 cut(s)	447, 452
BseDI	CCNNGG	2 cut(s)	304, 478
BseGI	GGATG	3 cut(s)	400, 718, 1247
BseLI	CCNNNNNNNGG	3 cut(s)	56, 251, 1426
BseMI	GCAATG	2 cut(s)	447, 452
BseMII	CTCAG	3 cut(s)	307, 324, 783
BseNI	ACTGG	3 cut(s)	122, 670, 848
BseSI	GKGCMC	2 cut(s)	672, 1141
BseXI	GCAGC	2 cut(s)	455, 579
Bsh1236I	CGCG	1 cut(s)	798
BshFI	GGCC	5 cut(s)	268, 477, 717, 1139, 1252
BshNI	GGYRCC	1 cut(s)	988
BsiSI	CCGG	3 cut(s)	252, 986, 1287
BslFI	GGGAC	2 cut(s)	61, 1415
BslI	CCNNNNNNNGG	3 cut(s)	56, 251, 1426
BsmAI	GTCTC	3 cut(s)	432, 975, 1306
BsmBI	CGTCTC	1 cut(s)	432
BsmFI	GGGAC	2 cut(s)	61, 1415
BsnI	GGCC	5 cut(s)	268, 477, 717, 1139, 1252
Bso31I	GGTCTC	1 cut(s)	975
Bsp119I	TTCGAA	2 cut(s)	775, 1157
Bsp120I	GGGCCC	1 cut(s)	1137
Bsp1286I	GDGCHC	3 cut(s)	559, 672, 1141
Bsp143I	GATC	4 cut(s)	67, 599, 658, 844
BspACI	CCGC	1 cut(s)	1079
BspANI	GGCC	5 cut(s)	268, 477, 717, 1139, 1252
BspCNI	CTCAG	3 cut(s)	306, 325, 782
BspFNI	CGCG	1 cut(s)	798
BspHI	TCATGA	1 cut(s)	430
BspLI	GGNNCC	6 cut(s)	48, 718, 981, 990, 1138, 1139
BspMAI	CTGCAG	1 cut(s)	445
BspPI	GGATC	3 cut(s)	607, 653, 839
BspT104I	TTCGAA	2 cut(s)	775, 1157
BspT107I	GGYRCC	1 cut(s)	988
BspTNI	GGTCTC	1 cut(s)	975
BsrDI	GCAATG	2 cut(s)	447, 452
BsrI	ACTGG	3 cut(s)	122, 670, 848
BssECI	CCNNGG	2 cut(s)	304, 478
BssMI	GATC	4 cut(s)	67, 599, 658, 844
BssNI	GRCGYC	1 cut(s)	312
BssSI	CACGAG	1 cut(s)	1142
BssT1I	CCWWGG	1 cut(s)	304
Bst2BI	CACGAG	1 cut(s)	1142
Bst4CI	ACNGT	3 cut(s)	328, 649, 965
Bst6I	CTCTTC	1 cut(s)	169
BstACI	GRCGYC	1 cut(s)	312
BstAPI	GCANNNNNTGC	1 cut(s)	449
BstBI	TTCGAA	2 cut(s)	775, 1157
BstDEI	CTNAG	5 cut(s)	110, 293, 333, 769, 815
BstDSI	CCRYGG	1 cut(s)	478
BstF5I	GGATG	3 cut(s)	400, 718, 1247
BstFNI	CGCG	1 cut(s)	798
BstHHI	GCGC	3 cut(s)	7, 62, 800
BstKTI	GATC	4 cut(s)	70, 602, 661, 847
BstMAI	GTCTC	3 cut(s)	432, 975, 1306
BstMBI	GATC	4 cut(s)	67, 599, 658, 844
BstMWI	GCNNNNNNNGC	2 cut(s)	449, 1085
BstSFI	CTRYAG	4 cut(s)	189, 441, 964, 1275
BstSLI	GKGCMC	2 cut(s)	672, 1141
BstUI	CGCG	1 cut(s)	798
BstV1I	GCAGC	2 cut(s)	455, 579
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
BsuRI	GGCC	5 cut(s)	268, 477, 717, 1139, 1252
BtgI	CCRYGG	1 cut(s)	478
BtsCI	GGATG	3 cut(s)	400, 718, 1247
CaiI	CAGNNNCTG	1 cut(s)	332
CciI	TCATGA	1 cut(s)	430
CfoI	GCGC	3 cut(s)	7, 62, 800
Cfr13I	GGNCC	5 cut(s)	716, 979, 1137, 1138, 1284
CseI	GACGC	1 cut(s)	320
Csp6I	GTAC	7 cut(s)	125, 180, 194, 242, 827, 851, 989
CspCI	CAANNNNNGTGG	2 cut(s)	1300, 1335
CviAII	CATG	7 cut(s)	431, 473, 502, 509, 560, 1015, 1027
CviQI	GTAC	7 cut(s)	125, 180, 194, 242, 827, 851, 989
DdeI	CTNAG	5 cut(s)	110, 293, 333, 769, 815
DpnI	GATC	4 cut(s)	69, 601, 660, 846
DpnII	GATC	4 cut(s)	67, 599, 658, 844
DriI	GACNNNNNGTC	1 cut(s)	967
EaeI	YGGCCR	1 cut(s)	475
Eam1104I	CTCTTC	1 cut(s)	169
Eam1105I	GACNNNNNGTC	1 cut(s)	967
EarI	CTCTTC	1 cut(s)	169
Eco130I	CCWWGG	1 cut(s)	304
Eco24I	GRGCYC	2 cut(s)	559, 1141
Eco31I	GGTCTC	1 cut(s)	975
Eco47I	GGWCC	2 cut(s)	979, 1284
Eco57I	CTGAAG	2 cut(s)	1160, 1203
EcoO109I	RGGNCCY	1 cut(s)	1137
EcoT14I	CCWWGG	1 cut(s)	304
EcoT38I	GRGCYC	2 cut(s)	559, 1141
ErhI	CCWWGG	1 cut(s)	304
Esp3I	CGTCTC	1 cut(s)	432
FaeI	CATG	7 cut(s)	434, 476, 505, 512, 563, 1018, 1030
FaqI	GGGAC	2 cut(s)	61, 1415
FatI	CATG	7 cut(s)	430, 472, 501, 508, 559, 1014, 1026
Fnu4HI	GCNGC	2 cut(s)	444, 568
FokI	GGATG	3 cut(s)	387, 725, 1254
FriOI	GRGCYC	2 cut(s)	559, 1141
Fsp4HI	GCNGC	2 cut(s)	444, 568
FspBI	CTAG	4 cut(s)	56, 177, 830, 878
GlaI	GCGC	3 cut(s)	6, 61, 799
GluI	GCNGC	2 cut(s)	444, 568
HaeIII	GGCC	5 cut(s)	268, 477, 717, 1139, 1252
HapII	CCGG	3 cut(s)	252, 986, 1287
HgaI	GACGC	1 cut(s)	320
HhaI	GCGC	3 cut(s)	7, 62, 800
Hin1I	GRCGYC	1 cut(s)	312
Hin1II	CATG	7 cut(s)	434, 476, 505, 512, 563, 1018, 1030
Hin6I	GCGC	3 cut(s)	5, 60, 798
HinP1I	GCGC	3 cut(s)	5, 60, 798
HincII	GTYRAC	1 cut(s)	867
HindII	GTYRAC	1 cut(s)	867
HindIII	AAGCTT	2 cut(s)	393, 1368
HpaII	CCGG	3 cut(s)	252, 986, 1287
HphI	GGTGA	2 cut(s)	31, 1070
Hpy166II	GTNNAC	4 cut(s)	792, 867, 961, 1150
Hpy188I	TCNGA	6 cut(s)	340, 604, 663, 844, 1221, 1306
Hpy188III	TCNNGA	3 cut(s)	272, 383, 431
Hpy8I	GTNNAC	4 cut(s)	792, 867, 961, 1150
Hpy99I	CGWCG	1 cut(s)	314
HpyAV	CCTTC	4 cut(s)	89, 299, 1178, 1385
HpyCH4III	ACNGT	3 cut(s)	328, 649, 965
HpyCH4IV	ACGT	2 cut(s)	375, 869
HpyCH4V	TGCA	8 cut(s)	39, 443, 452, 457, 505, 512, 567, 1014
HpyF10VI	GCNNNNNNNGC	2 cut(s)	449, 1085
HpyF3I	CTNAG	5 cut(s)	110, 293, 333, 769, 815
HpySE526I	ACGT	2 cut(s)	375, 869
Hsp92I	GRCGYC	1 cut(s)	312
Hsp92II	CATG	7 cut(s)	434, 476, 505, 512, 563, 1018, 1030
HspAI	GCGC	3 cut(s)	5, 60, 798
KpnI	GGTACC	1 cut(s)	992
Kzo9I	GATC	4 cut(s)	67, 599, 658, 844
LmnI	GCTCC	3 cut(s)	52, 760, 1289
Lsp1109I	GCAGC	2 cut(s)	455, 579
LweI	GCATC	2 cut(s)	331, 789
MaeI	CTAG	4 cut(s)	56, 177, 830, 878
MaeII	ACGT	2 cut(s)	375, 869
MaeIII	GTNAC	2 cut(s)	612, 1081
MalI	GATC	4 cut(s)	69, 601, 660, 846
MboI	GATC	4 cut(s)	67, 599, 658, 844
MboII	GAAGA	7 cut(s)	147, 150, 156, 159, 162, 1073, 1267
MfeI	CAATTG	1 cut(s)	416
MflI	RGATCY	1 cut(s)	67
MhlI	GDGCHC	3 cut(s)	559, 672, 1141
MluCI	AATT	6 cut(s)	146, 349, 416, 746, 1009, 1089
MlyI	GAGTC	8 cut(s)	92, 269, 344, 431, 669, 761, 1397, 1431
MmeI	TCCRAC	1 cut(s)	686
MseI	TTAA	3 cut(s)	149, 546, 692
MslI	CAYNNNNRTG	1 cut(s)	477
MspI	CCGG	3 cut(s)	252, 986, 1287
MunI	CAATTG	1 cut(s)	416
MvnI	CGCG	1 cut(s)	798
MwoI	GCNNNNNNNGC	2 cut(s)	449, 1085
NdeII	GATC	4 cut(s)	67, 599, 658, 844
NlaIII	CATG	7 cut(s)	434, 476, 505, 512, 563, 1018, 1030
NlaIV	GGNNCC	6 cut(s)	48, 718, 981, 990, 1138, 1139
NmuCI	GTSAC	1 cut(s)	1081
NspV	TTCGAA	2 cut(s)	775, 1157
PagI	TCATGA	1 cut(s)	430
PcsI	WCGNNNNNNNCGW	1 cut(s)	381
PfeI	GAWTC	4 cut(s)	185, 386, 680, 1307
PkrI	GCNGC	2 cut(s)	445, 569
PleI	GAGTC	8 cut(s)	92, 269, 343, 430, 669, 761, 1397, 1430
PpsI	GAGTC	8 cut(s)	92, 269, 343, 430, 669, 761, 1397, 1430
Psp1406I	AACGTT	1 cut(s)	869
PspN4I	GGNNCC	6 cut(s)	48, 718, 981, 990, 1138, 1139
PspOMI	GGGCCC	1 cut(s)	1137
PspPI	GGNCC	5 cut(s)	716, 979, 1137, 1138, 1284
PstI	CTGCAG	1 cut(s)	445
PstNI	CAGNNNCTG	1 cut(s)	332
PsuI	RGATCY	1 cut(s)	67
RsaI	GTAC	7 cut(s)	126, 181, 195, 243, 828, 852, 990
RsaNI	GTAC	7 cut(s)	125, 180, 194, 242, 827, 851, 989
RseI	CAYNNNNRTG	1 cut(s)	477
SaqAI	TTAA	3 cut(s)	149, 546, 692
SatI	GCNGC	2 cut(s)	444, 568
Sau3AI	GATC	4 cut(s)	67, 599, 658, 844
Sau96I	GGNCC	5 cut(s)	716, 979, 1137, 1138, 1284
ScaI	AGTACT	2 cut(s)	181, 195
SchI	GAGTC	8 cut(s)	92, 269, 344, 431, 669, 761, 1397, 1431
SduI	GDGCHC	3 cut(s)	559, 672, 1141
SfaNI	GCATC	2 cut(s)	331, 789
SfcI	CTRYAG	4 cut(s)	189, 441, 964, 1275
SfuI	TTCGAA	2 cut(s)	775, 1157
SinI	GGWCC	2 cut(s)	979, 1284
SmiMI	CAYNNNNRTG	1 cut(s)	477
SmlI	CTYRAG	2 cut(s)	270, 626
SmoI	CTYRAG	2 cut(s)	270, 626
SpeI	ACTAGT	1 cut(s)	176
Sse9I	AATT	6 cut(s)	146, 349, 416, 746, 1009, 1089
SsiI	CCGC	1 cut(s)	1079
SspMI	CTAG	4 cut(s)	56, 177, 830, 878
StyI	CCWWGG	1 cut(s)	304
TaaI	ACNGT	3 cut(s)	328, 649, 965
TaiI	ACGT	2 cut(s)	378, 872
TaqI	TCGA	7 cut(s)	354, 365, 384, 519, 678, 775, 1157
TasI	AATT	6 cut(s)	146, 349, 416, 746, 1009, 1089
TatI	WGTACW	4 cut(s)	124, 179, 193, 850
TfiI	GAWTC	4 cut(s)	185, 386, 680, 1307
Tru1I	TTAA	3 cut(s)	149, 546, 692
Tru9I	TTAA	3 cut(s)	149, 546, 692
TseFI	GTSAC	1 cut(s)	1081
TseI	GCWGC	2 cut(s)	443, 567
Tsp45I	GTSAC	1 cut(s)	1081
TspDTI	ATGAA	3 cut(s)	159, 447, 461
TspGWI	ACGGA	1 cut(s)	687
VpaK11BI	GGWCC	2 cut(s)	979, 1284
XspI	CTAG	4 cut(s)	56, 177, 830, 878
ZrmI	AGTACT	2 cut(s)	181, 195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.