Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0007095

Physical Location & Seq

Genomic Coordinates Forward (+)

2363173 .. 2364569

Gene Structure 1397 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G023900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGTTTGGTTTGTGTAGTATTAAGAATAAAATAATGTTCTGTTTTCCCTTCTTCTTTTTTTCCACTTCAAATTGTCACCCTTCTTGGGTAAGTAAAAAATTTATTTGGCGCATGATGCAGATTGGAAATGCAGTGATTAACGATGAAACTGATTTAAGAGGAATGTACGACTACTTAGCAAGCCACGCCCTCATTTCGGATCAAACTGCAAACAAAATCAACAAATATTGTGATTTTTCACCCAATGCCACAAAGCAGCCTAAGGAGTGCACTGATGCCGCTGAGGCTGCAGCTAAGGATACCTATTACATTGACATTTTCAACATCTATGCCTCCTCATGCGTTTCCTCCAACCTCACTGCAAAACCCAAAAAGGCTTCAATATTCAAATTCGACCCGTGCAGCGAGTACTATGCTTATGCTTATTTGAACCGGCCAGACGTTCAACAAGCTCTCCATGCCAATGTCACTAAACTCACACATGACTGGGAACCATGCAGTGATGTTATCACAAACTGGGCCGATAGAGCATCGACCGTACTGCCCCTTTTAAAAGAGTTCCTGGCTAATGATGTTCGAGTGTGGATTTTTAGTGGAGACATAGATGCAAGGGTACCAGTCACTTCAACAAAATATTCTATTGAAAAGCTGAATCTTCCAGTAAAGACTGAATGGCATGCTTGGTTTCTTGGTGGAGAGGTTGGTGGTTACACACAAGTGTATGAAGGAGAGCTAACATTTGCTACAGTGAGAGGGGCAGGGCATCAAGTGCCAAGCTATCAGCCTGCAAGAGGACTTTCCCTCATCAAGCACTTCCTTGATGGCACACCACTCCCTAATACTACAAGACATACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

286

Amino Acids

32.23

Weight (kDa)

7.06

Isoelectric Point (pI)

32.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52020 AT3G56540 AT3G63470
fragaria_vesca	FvH4_7g01760 FvH4_7g01760 FvH4_7g01760 FvH4_7g01760
malus_domestica	MD02G1300900.v1.1 MD07G1023100.v1.1
prunus_persica	Prupe.2G023700_v2.0.a1 Prupe.2G023700_v2.0.a1 Prupe.2G023800_v2.0.a1 Prupe.2G023900_v2.0.a1
pyrus_communis	pycom02g25260 pycom07g01750
rosa_chinensis	RchiOBHm_Chr1g0318331
rosa_laevigata	RLG00000030544
rosa_multiflora	Rmu_sc0003936.1_g000012
rosa_roxburghii	Rroxscaffold_4G00329330
rosa_rugosa	Rorug01G0020400
rosa_samantha	Rh1AG032500 Rh1BG028100 Rh1CG031000 Rh1DG038600
rosa_wichuraiana	Rw1G002600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	613
AccB1I	GGYRCC	1 cut(s)	613
AciI	CCGC	1 cut(s)	279
AclWI	GGATC	1 cut(s)	207
AcoI	YGGCCR	1 cut(s)	434
AcsI	RAATTY	2 cut(s)	98, 389
AfaI	GTAC	4 cut(s)	167, 410, 540, 615
AfiI	CCNNNNNNNGG	3 cut(s)	85, 196, 791
AgsI	TTSAA	8 cut(s)	69, 322, 381, 388, 430, 446, 627, 644
AjnI	CCWGG	1 cut(s)	561
AleI	CACNNNNGTG	1 cut(s)	716
AluBI	AGCT	5 cut(s)	293, 452, 649, 733, 777
AluI	AGCT	5 cut(s)	293, 452, 649, 733, 777
Alw21I	GWGCWC	1 cut(s)	272
Alw26I	GTCTC	1 cut(s)	591
Alw44I	GTGCAC	1 cut(s)	268
AlwI	GGATC	1 cut(s)	207
AoxI	GGCC	2 cut(s)	434, 519
ApaLI	GTGCAC	1 cut(s)	268
ApeKI	GCWGC	4 cut(s)	256, 287, 290, 402
ApoI	RAATTY	2 cut(s)	98, 389
Asp718I	GGTACC	1 cut(s)	613
AspLEI	GCGC	1 cut(s)	111
AspS9I	GGNCC	1 cut(s)	519
AsuHPI	GGTGA	2 cut(s)	68, 231
AxyI	CCTNAGG	1 cut(s)	261
BaeGI	GKGCMC	1 cut(s)	272
BanI	GGYRCC	1 cut(s)	613
Bbv12I	GWGCWC	1 cut(s)	272
BbvCI	CCTCAGC	1 cut(s)	282
BbvI	GCAGC	4 cut(s)	268, 274, 302, 414
BccI	CCATC	1 cut(s)	815
BcgI	CGANNNNNNTGC	4 cut(s)	395, 429, 523, 557
BciT130I	CCWGG	1 cut(s)	563
BciVI	GTATCC	1 cut(s)	292
BcoDI	GTCTC	1 cut(s)	591
BfmI	CTRYAG	2 cut(s)	288, 744
BfuI	GTATCC	1 cut(s)	292
BglI	GCCNNNNNGGC	1 cut(s)	284
BisI	GCNGC	5 cut(s)	257, 279, 288, 291, 403
BlsI	GCNGC	5 cut(s)	258, 280, 289, 292, 404
BmcAI	AGTACT	1 cut(s)	410
Bme1390I	CCNGG	1 cut(s)	563
BmgT120I	GGNCC	1 cut(s)	519
BmiI	GGNNCC	2 cut(s)	492, 615
BmrFI	CCNGG	1 cut(s)	563
BmrI	ACTGGG	2 cut(s)	496, 526
BmsI	GCATC	5 cut(s)	105, 265, 539, 595, 772
BmuI	ACTGGG	2 cut(s)	496, 526
Bpu10I	CCTNAGC	2 cut(s)	282, 294
BsaXI	ACNNNNNCTCC	2 cut(s)	438, 468
Bsc4I	CCNNNNNNNGG	3 cut(s)	85, 196, 791
Bse118I	RCCGGY	1 cut(s)	432
Bse1I	ACTGG	4 cut(s)	491, 521, 617, 659
Bse21I	CCTNAGG	1 cut(s)	261
BseBI	CCWGG	1 cut(s)	563
BseLI	CCNNNNNNNGG	3 cut(s)	85, 196, 791
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	4 cut(s)	491, 521, 617, 659
BseRI	GAGGAG	1 cut(s)	325
BseSI	GKGCMC	1 cut(s)	272
BseXI	GCAGC	4 cut(s)	268, 274, 302, 414
BsgI	GTGCAG	1 cut(s)	421
Bsh1285I	CGRYCG	1 cut(s)	537
BshFI	GGCC	2 cut(s)	436, 521
BshNI	GGYRCC	1 cut(s)	613
BsiEI	CGRYCG	1 cut(s)	537
BsiHKAI	GWGCWC	1 cut(s)	272
BsiSI	CCGG	1 cut(s)	433
BslI	CCNNNNNNNGG	3 cut(s)	85, 196, 791
BsmAI	GTCTC	1 cut(s)	591
BsnI	GGCC	2 cut(s)	436, 521
Bsp1286I	GDGCHC	1 cut(s)	272
Bsp143I	GATC	1 cut(s)	199
BspACI	CCGC	1 cut(s)	279
BspANI	GGCC	2 cut(s)	436, 521
BspCNI	CTCAG	1 cut(s)	274
BspLI	GGNNCC	2 cut(s)	492, 615
BspMAI	CTGCAG	1 cut(s)	292
BspPI	GGATC	1 cut(s)	207
BspT107I	GGYRCC	1 cut(s)	613
BsrFI	RCCGGY	1 cut(s)	432
BsrI	ACTGG	4 cut(s)	491, 521, 617, 659
BssAI	RCCGGY	1 cut(s)	432
BssMI	GATC	1 cut(s)	199
Bst2UI	CCWGG	1 cut(s)	563
Bst4CI	ACNGT	2 cut(s)	538, 748
BstAPI	GCANNNNNTGC	1 cut(s)	769
BstC8I	GCNNGC	3 cut(s)	181, 678, 786
BstDEI	CTNAG	4 cut(s)	175, 261, 282, 294
BstENI	CCTNNNNNAGG	1 cut(s)	789
BstHHI	GCGC	1 cut(s)	111
BstKTI	GATC	1 cut(s)	202
BstMAI	GTCTC	1 cut(s)	591
BstMBI	GATC	1 cut(s)	199
BstMCI	CGRYCG	1 cut(s)	537
BstMWI	GCNNNNNNNGC	7 cut(s)	115, 185, 284, 287, 458, 527, 769
BstNI	CCWGG	1 cut(s)	563
BstNSI	RCATGY	1 cut(s)	680
BstSCI	CCNGG	1 cut(s)	561
BstSFI	CTRYAG	2 cut(s)	288, 744
BstSLI	GKGCMC	1 cut(s)	272
BstV1I	GCAGC	4 cut(s)	268, 274, 302, 414
Bsu36I	CCTNAGG	1 cut(s)	261
BsuI	GTATCC	1 cut(s)	292
BsuRI	GGCC	2 cut(s)	436, 521
BtsI	GCAGTG	3 cut(s)	138, 357, 505
BtsIMutI	CAGTG	5 cut(s)	138, 270, 357, 505, 753
Cac8I	GCNNGC	3 cut(s)	181, 678, 786
CfoI	GCGC	1 cut(s)	111
Cfr10I	RCCGGY	1 cut(s)	432
Cfr13I	GGNCC	1 cut(s)	519
Csp6I	GTAC	4 cut(s)	166, 409, 539, 614
CviAII	CATG	6 cut(s)	112, 339, 458, 482, 495, 677
CviQI	GTAC	4 cut(s)	166, 409, 539, 614
DdeI	CTNAG	4 cut(s)	175, 261, 282, 294
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
DraI	TTTAAA	1 cut(s)	552
EaeI	YGGCCR	1 cut(s)	434
Eco81I	CCTNAGG	1 cut(s)	261
EcoNI	CCTNNNNNAGG	1 cut(s)	789
EcoRII	CCWGG	1 cut(s)	561
FaeI	CATG	6 cut(s)	115, 342, 461, 485, 498, 680
FatI	CATG	6 cut(s)	111, 338, 457, 481, 494, 676
Fnu4HI	GCNGC	5 cut(s)	257, 279, 288, 291, 403
Fsp4HI	GCNGC	5 cut(s)	257, 279, 288, 291, 403
GlaI	GCGC	1 cut(s)	110
GluI	GCNGC	5 cut(s)	257, 279, 288, 291, 403
HaeIII	GGCC	2 cut(s)	436, 521
HapII	CCGG	1 cut(s)	433
HhaI	GCGC	1 cut(s)	111
Hin1II	CATG	6 cut(s)	115, 342, 461, 485, 498, 680
Hin6I	GCGC	1 cut(s)	109
HinP1I	GCGC	1 cut(s)	109
HinfI	GANTC	1 cut(s)	652
HpaII	CCGG	1 cut(s)	433
HphI	GGTGA	2 cut(s)	68, 231
Hpy166II	GTNNAC	1 cut(s)	270
Hpy188I	TCNGA	1 cut(s)	199
Hpy8I	GTNNAC	1 cut(s)	270
HpyAV	CCTTC	3 cut(s)	58, 90, 719
HpyCH4III	ACNGT	2 cut(s)	538, 748
HpyCH4IV	ACGT	1 cut(s)	441
HpyF10VI	GCNNNNNNNGC	7 cut(s)	115, 185, 284, 287, 458, 527, 769
HpyF3I	CTNAG	4 cut(s)	175, 261, 282, 294
HpySE526I	ACGT	1 cut(s)	441
Hsp92II	CATG	6 cut(s)	115, 342, 461, 485, 498, 680
HspAI	GCGC	1 cut(s)	109
KpnI	GGTACC	1 cut(s)	617
Kzo9I	GATC	1 cut(s)	199
Lsp1109I	GCAGC	4 cut(s)	268, 274, 302, 414
LweI	GCATC	5 cut(s)	105, 265, 539, 595, 772
MaeII	ACGT	1 cut(s)	441
MaeIII	GTNAC	4 cut(s)	74, 466, 619, 707
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MboII	GAAGA	2 cut(s)	43, 647
MhlI	GDGCHC	1 cut(s)	272
MluCI	AATT	3 cut(s)	70, 98, 389
MmeI	TCCRAC	1 cut(s)	375
MseI	TTAA	4 cut(s)	21, 138, 155, 551
MslI	CAYNNNNRTG	2 cut(s)	462, 716
MspA1I	CMGCKG	1 cut(s)	281
MspI	CCGG	1 cut(s)	433
MspR9I	CCNGG	1 cut(s)	563
MvaI	CCWGG	1 cut(s)	563
MwoI	GCNNNNNNNGC	7 cut(s)	115, 185, 284, 287, 458, 527, 769
NdeII	GATC	1 cut(s)	199
NlaIII	CATG	6 cut(s)	115, 342, 461, 485, 498, 680
NlaIV	GGNNCC	2 cut(s)	492, 615
NmuCI	GTSAC	3 cut(s)	74, 466, 619
NspI	RCATGY	1 cut(s)	680
OliI	CACNNNNGTG	1 cut(s)	716
PaeI	GCATGC	1 cut(s)	680
PfeI	GAWTC	1 cut(s)	652
PkrI	GCNGC	5 cut(s)	258, 280, 289, 292, 404
Psp6I	CCWGG	1 cut(s)	561
PspGI	CCWGG	1 cut(s)	561
PspN4I	GGNNCC	2 cut(s)	492, 615
PspPI	GGNCC	1 cut(s)	519
PstI	CTGCAG	1 cut(s)	292
RsaI	GTAC	4 cut(s)	167, 410, 540, 615
RsaNI	GTAC	4 cut(s)	166, 409, 539, 614
RseI	CAYNNNNRTG	2 cut(s)	462, 716
SaqAI	TTAA	4 cut(s)	21, 138, 155, 551
SatI	GCNGC	5 cut(s)	257, 279, 288, 291, 403
Sau3AI	GATC	1 cut(s)	199
Sau96I	GGNCC	1 cut(s)	519
ScaI	AGTACT	1 cut(s)	410
ScrFI	CCNGG	1 cut(s)	563
SduI	GDGCHC	1 cut(s)	272
SfaNI	GCATC	5 cut(s)	105, 265, 539, 595, 772
SfcI	CTRYAG	2 cut(s)	288, 744
SmiMI	CAYNNNNRTG	2 cut(s)	462, 716
SphI	GCATGC	1 cut(s)	680
Sse9I	AATT	3 cut(s)	70, 98, 389
SsiI	CCGC	1 cut(s)	279
SspI	AATATT	3 cut(s)	227, 384, 635
StyD4I	CCNGG	1 cut(s)	561
TaaI	ACNGT	2 cut(s)	538, 748
TaiI	ACGT	1 cut(s)	444
TaqI	TCGA	3 cut(s)	393, 533, 577
TasI	AATT	3 cut(s)	70, 98, 389
TatI	WGTACW	1 cut(s)	408
TauI	GCSGC	1 cut(s)	281
TfiI	GAWTC	1 cut(s)	652
Tru1I	TTAA	4 cut(s)	21, 138, 155, 551
Tru9I	TTAA	4 cut(s)	21, 138, 155, 551
TscAI	CASTG	5 cut(s)	138, 277, 364, 505, 753
TseFI	GTSAC	3 cut(s)	74, 466, 619
TseI	GCWGC	4 cut(s)	256, 287, 290, 402
Tsp45I	GTSAC	3 cut(s)	74, 466, 619
TspDTI	ATGAA	2 cut(s)	159, 738
TspRI	CASTG	5 cut(s)	138, 277, 364, 505, 753
VneI	GTGCAC	1 cut(s)	268
XagI	CCTNNNNNAGG	1 cut(s)	789
XapI	RAATTY	2 cut(s)	98, 389
XceI	RCATGY	1 cut(s)	680
ZrmI	AGTACT	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.