AT3G56630

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0008423
Physical Location & Seq
Forward (+)
20978901 .. 20980772
1872 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G56630.1

Sequence Viewer

Length: 1500 bp
ATGGAGCATTTCATCCTCATCTCCCTCCTCTGTTTCCCTATCGTCATCTTCTTCATCTTCTTCCCCAAGAATTCTTCTTCAGAATTTGGTTTCAAGTCGTATCCGATCGTTGGAAGCTTACCTGGTCTAGTGAATAACCGTCACCGATTCCTCGACTGGACGGTGGAAACTCTGTCTCGATGCCCAACCCAAACGGCGATTTTTCGGCGACCAGGGAAGCTGCAGTTCGTCATGACGGCGAATCCAGCTAACGTCGAGTATATGCTCAAGACGAAATTCGAAAGTTTCCCTAAAGGCGAACGGTTCATCTCGATTCTCGAGGATTTTCTCGGCCGCGGGATTTTTAACTCCGACGGTGAGATGTGGTGGAAACAGAGGAAGACGGCCAGTTATGAATTCAGTACTAAATCTCTCCGTGACTTCGTTATGAGCAACGTCACCGTCGAAATCAACACTAGGCTTGTTCCAGTGTTAGCAGAAGCTGCAACCAACGGAAAATTGATAGATCTTCAAGACATATTGGAGCGGTTCGCGTTCGATAACATCTGTAAATTAGCTTTCAACGTTGATTCAGCTTGTCTCGGCGACGACGGAGCAGCCGGTGTAAACTTCATGCAGGCCTTTGAAACGGCGGCGACGATCATCTCGCAACGGTTTCAGTCTGTGATTTCGTATTCATGGAAGATTAAAAAGAAACTCAACATTGGATCAGAGAGAGTTCTGAGAGAATCAATCATGATCGTCCATAAATTCGCAGACGAGATCGTGCGTAACAGGATTGAACAAGGAAAGGTAAGTGATCACAAGGAAGATTTGCTTTCTCGGTTTATCAGCAAGGAGGAGATGAATTCTCCGGAGATACTTCGTGATATTGTCATAAGTTTCATACTTGCAGGACGAGACACTACTTCCTCTGCTTTGAGCTGGTTCTTTTGGTTGCTCTCTATGCATCCAGAAGTGAAAGATAAGATTCTACAAGAGCTAAACTCGATTCGAGAACGAACAGGGAAGCGAATCGGGGAAGTTTACGGGTTTGAAGATCTTAAACTGATGAATTATCTTCACGCAGCGATAACTGAATCTCTACGATTGTATCCGCCAGTGCCAGTGGATACAATGAGTTGTGCTGAGGACAATGTGTTGCCTGATGGGACATTTATAGGGAAAGATTGGGGGATAAGCTATAACGCGTATGCGATGGGGAGGATGGAGAGTATTTGGGGGAAAGATTGCGATCGGTTTGATCCTGAGAGGTGGATTGATGAAACAAATGGTGGTTTTAGAGGTGAGAATCCTTATAAGTTTCCTGCGTTTCATGCGGGACCAAGGATGTGTTTAGGGAAGGAGATGGCTTATATTCAGATGAAATCGATAGTCGCTGCGGTTTTAGAGAGGTTTGTGGTTGAGGTTCCAGGGAAGAAGGAGCGTCCTGAGATTCTAATGTCGGTGACACTTAGAATCAGAGGAGGTTTGAATGTGAGAGTACAAGAAAGATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

499

Amino Acids

57.13

Weight (kDa)

7.58

Isoelectric Point (pI)

42.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 32 - 481 8.5e-70 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1299
AccBSI CCGCTC 1 cut(s) 526
AccII CGCG 3 cut(s) 336, 533, 1190
AccIII TCCGGA 1 cut(s) 853
AciI CCGC 7 cut(s) 334, 336, 526, 632, 1097, 1319, 1382
AclI AACGTT 1 cut(s) 564
AclWI GGATC 2 cut(s) 715, 1238
AcoI YGGCCR 2 cut(s) 331, 384
AcsI RAATTY 6 cut(s) 70, 83, 275, 395, 749, 847
AcuI CTGAAG 1 cut(s) 63
AfaI GTAC 2 cut(s) 403, 1485
AfiI CCNNNNNNNGG 1 cut(s) 110
AflIII ACRYGT 1 cut(s) 1188
AgsI TTSAA 7 cut(s) 94, 512, 562, 626, 782, 1037, 1474
AjnI CCWGG 3 cut(s) 121, 211, 1411
AluBI AGCT 9 cut(s) 117, 220, 248, 482, 557, 575, 924, 982, 1182
AluI AGCT 9 cut(s) 117, 220, 248, 482, 557, 575, 924, 982, 1182
Alw26I GTCTC 3 cut(s) 180, 584, 894
AlwI GGATC 2 cut(s) 715, 1238
AlwNI CAGNNNCTG 1 cut(s) 482
Ama87I CYCGRG 1 cut(s) 317
Aor13HI TCCGGA 1 cut(s) 853
AoxI GGCC 3 cut(s) 331, 384, 618
ApeKI GCWGC 5 cut(s) 220, 482, 596, 1067, 1379
ApoI RAATTY 6 cut(s) 70, 83, 275, 395, 749, 847
AspS9I GGNCC 1 cut(s) 1322
AsuHPI GGTGA 5 cut(s) 134, 368, 430, 1298, 1459
AsuII TTCGAA 1 cut(s) 279
AvaI CYCGRG 1 cut(s) 317
AvaII GGWCC 1 cut(s) 1322
BaeI ACNNNNGTAYC 2 cut(s) 1076, 1109
BbsI GAAGAC 1 cut(s) 386
BbvCI CCTCAGC 1 cut(s) 1128
BbvI GCAGC 5 cut(s) 207, 469, 608, 1079, 1366
BccI CCATC 4 cut(s) 1142, 1192, 1201, 1342
BceAI ACGGC 4 cut(s) 210, 252, 399, 645
BciT130I CCWGG 3 cut(s) 123, 213, 1413
BciVI GTATCC 3 cut(s) 111, 1104, 1105
BclI TGATCA 1 cut(s) 799
BcoDI GTCTC 3 cut(s) 180, 584, 894
BfaI CTAG 2 cut(s) 128, 456
BfmI CTRYAG 1 cut(s) 221
BfuI GTATCC 3 cut(s) 111, 1104, 1105
BglII AGATCT 3 cut(s) 505, 1039, 1493
BisI GCNGC 7 cut(s) 221, 334, 483, 597, 633, 1068, 1380
BlsI GCNGC 7 cut(s) 222, 335, 484, 598, 634, 1069, 1381
BmcAI AGTACT 1 cut(s) 403
Bme1390I CCNGG 3 cut(s) 123, 213, 1413
Bme18I GGWCC 1 cut(s) 1322
BmeT110I CYCGRG 1 cut(s) 317
BmgT120I GGNCC 1 cut(s) 1322
BmiI GGNNCC 2 cut(s) 1323, 1410
BmrFI CCNGG 3 cut(s) 123, 213, 1413
BmsI GCATC 2 cut(s) 170, 958
BpiI GAAGAC 1 cut(s) 386
BplI GAGNNNNNCTC 2 cut(s) 971, 1003
Bpu10I CCTNAGC 1 cut(s) 1128
Bpu14I TTCGAA 1 cut(s) 279
BpuEI CTTGAG 1 cut(s) 251
Bsa29I ATCGAT 1 cut(s) 1370
BsaBI GATNNNNATC 1 cut(s) 1233
BsaJI CCNNGG 4 cut(s) 212, 334, 1325, 1412
BsaWI WCCGGW 1 cut(s) 853
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse118I RCCGGY 1 cut(s) 599
Bse1I ACTGG 5 cut(s) 161, 387, 467, 1100, 1106
Bse8I GATNNNNATC 1 cut(s) 1233
BseAI TCCGGA 1 cut(s) 853
BseBI CCWGG 3 cut(s) 123, 213, 1413
BseCI ATCGAT 1 cut(s) 1370
BseDI CCNNGG 4 cut(s) 212, 334, 1325, 1412
BseGI GGATG 4 cut(s) 12, 949, 1212, 1335
BseJI GATNNNNATC 1 cut(s) 1233
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMII CTCAG 4 cut(s) 713, 1119, 1239, 1422
BseNI ACTGG 5 cut(s) 161, 387, 467, 1100, 1106
BseRI GAGGAG 3 cut(s) 17, 854, 1479
BseX3I CGGCCG 1 cut(s) 331
BseXI GCAGC 5 cut(s) 207, 469, 608, 1079, 1366
Bsh1236I CGCG 3 cut(s) 336, 533, 1190
Bsh1285I CGRYCG 3 cut(s) 108, 334, 1237
BshFI GGCC 3 cut(s) 333, 386, 620
BshVI ATCGAT 1 cut(s) 1370
BsiEI CGRYCG 3 cut(s) 108, 334, 1237
BsiHKCI CYCGRG 1 cut(s) 317
BsiSI CCGG 2 cut(s) 600, 854
BslFI GGGAC 2 cut(s) 1165, 1335
BslI CCNNNNNNNGG 1 cut(s) 110
BsmAI GTCTC 3 cut(s) 180, 584, 894
BsmFI GGGAC 2 cut(s) 1165, 1335
BsnI GGCC 3 cut(s) 333, 386, 620
BsoBI CYCGRG 1 cut(s) 317
Bsp119I TTCGAA 1 cut(s) 279
Bsp13I TCCGGA 1 cut(s) 853
BspACI CCGC 7 cut(s) 334, 336, 526, 632, 1097, 1319, 1382
BspANI GGCC 3 cut(s) 333, 386, 620
BspCNI CTCAG 4 cut(s) 714, 1120, 1240, 1423
BspDI ATCGAT 1 cut(s) 1370
BspEI TCCGGA 1 cut(s) 853
BspFNI CGCG 3 cut(s) 336, 533, 1190
BspHI TCATGA 2 cut(s) 231, 735
BspLI GGNNCC 2 cut(s) 1323, 1410
BspMAI CTGCAG 1 cut(s) 225
BspPI GGATC 2 cut(s) 715, 1238
BspT104I TTCGAA 1 cut(s) 279
BsrBI CCGCTC 1 cut(s) 526
BsrFI RCCGGY 1 cut(s) 599
BsrI ACTGG 5 cut(s) 161, 387, 467, 1100, 1106
BssAI RCCGGY 1 cut(s) 599
BssECI CCNNGG 4 cut(s) 212, 334, 1325, 1412
BssT1I CCWWGG 1 cut(s) 1325
Bst2UI CCWGG 3 cut(s) 123, 213, 1413
Bst4CI ACNGT 6 cut(s) 140, 163, 303, 356, 442, 654
BstAPI GCANNNNNTGC 1 cut(s) 482
BstBI TTCGAA 1 cut(s) 279
BstC8I GCNNGC 1 cut(s) 618
BstDEI CTNAG 5 cut(s) 722, 1128, 1248, 1431, 1454
BstDSI CCRYGG 1 cut(s) 334
BstF5I GGATG 4 cut(s) 12, 949, 1212, 1335
BstFNI CGCG 3 cut(s) 336, 533, 1190
BstMAI GTCTC 3 cut(s) 180, 584, 894
BstMCI CGRYCG 3 cut(s) 108, 334, 1237
BstMWI GCNNNNNNNGC 4 cut(s) 245, 482, 946, 1316
BstNI CCWGG 3 cut(s) 123, 213, 1413
BstSCI CCNGG 3 cut(s) 121, 211, 1411
BstSFI CTRYAG 1 cut(s) 221
BstUI CGCG 3 cut(s) 336, 533, 1190
BstV1I GCAGC 5 cut(s) 207, 469, 608, 1079, 1366
BstV2I GAAGAC 1 cut(s) 386
BstX2I RGATCY 3 cut(s) 505, 1039, 1493
BstYI RGATCY 3 cut(s) 505, 1039, 1493
BstZI CGGCCG 1 cut(s) 331
Bsu15I ATCGAT 1 cut(s) 1370
BsuI GTATCC 3 cut(s) 111, 1104, 1105
BsuRI GGCC 3 cut(s) 333, 386, 620
BsuTUI ATCGAT 1 cut(s) 1370
BtgI CCRYGG 1 cut(s) 334
BtgZI GCGATG 1 cut(s) 1211
BtsCI GGATG 4 cut(s) 12, 949, 1212, 1335
BtsIMutI CAGTG 3 cut(s) 474, 1107, 1113
Cac8I GCNNGC 1 cut(s) 618
CaiI CAGNNNCTG 1 cut(s) 482
CciI TCATGA 2 cut(s) 231, 735
Cfr10I RCCGGY 1 cut(s) 599
Cfr13I GGNCC 1 cut(s) 1322
Cfr42I CCGCGG 1 cut(s) 337
ClaI ATCGAT 1 cut(s) 1370
CseI GACGC 1 cut(s) 1415
CsiI ACCWGGT 1 cut(s) 121
Csp6I GTAC 2 cut(s) 402, 1484
CviAII CATG 5 cut(s) 232, 613, 678, 736, 1316
CviQI GTAC 2 cut(s) 402, 1484
DdeI CTNAG 5 cut(s) 722, 1128, 1248, 1431, 1454
EaeI YGGCCR 2 cut(s) 331, 384
EagI CGGCCG 1 cut(s) 331
EciI GGCGGA 1 cut(s) 1086
EclXI CGGCCG 1 cut(s) 331
Eco130I CCWWGG 1 cut(s) 1325
Eco147I AGGCCT 1 cut(s) 620
Eco47I GGWCC 1 cut(s) 1322
Eco52I CGGCCG 1 cut(s) 331
Eco57I CTGAAG 1 cut(s) 63
Eco88I CYCGRG 1 cut(s) 317
EcoRI GAATTC 3 cut(s) 70, 395, 847
EcoRII CCWGG 3 cut(s) 121, 211, 1411
EcoT14I CCWWGG 1 cut(s) 1325
EcoT22I ATGCAT 1 cut(s) 951
ErhI CCWWGG 1 cut(s) 1325
FaeI CATG 5 cut(s) 235, 616, 681, 739, 1319
FalI AAGNNNNNCTT 2 cut(s) 801, 833
FaqI GGGAC 2 cut(s) 1165, 1335
FatI CATG 5 cut(s) 231, 612, 677, 735, 1315
FauI CCCGC 2 cut(s) 329, 1312
FbaI TGATCA 1 cut(s) 799
Fnu4HI GCNGC 7 cut(s) 221, 334, 483, 597, 633, 1068, 1380
FokI GGATG 3 cut(s) 936, 1219, 1342
Fsp4HI GCNGC 7 cut(s) 221, 334, 483, 597, 633, 1068, 1380
FspBI CTAG 2 cut(s) 128, 456
GluI GCNGC 7 cut(s) 221, 334, 483, 597, 633, 1068, 1380
HaeIII GGCC 3 cut(s) 333, 386, 620
HapII CCGG 2 cut(s) 600, 854
HgaI GACGC 1 cut(s) 1415
Hin1II CATG 5 cut(s) 235, 616, 681, 739, 1319
HindIII AAGCTT 1 cut(s) 115
HpaII CCGG 2 cut(s) 600, 854
HphI GGTGA 5 cut(s) 134, 368, 430, 1298, 1459
Hpy166II GTNNAC 2 cut(s) 607, 1027
Hpy188I TCNGA 7 cut(s) 82, 105, 352, 712, 723, 1362, 1463
Hpy8I GTNNAC 2 cut(s) 607, 1027
Hpy99I CGWCG 6 cut(s) 257, 356, 446, 590, 593, 640
HpyAV CCTTC 2 cut(s) 1336, 1414
HpyCH4III ACNGT 6 cut(s) 140, 163, 303, 356, 442, 654
HpyCH4IV ACGT 3 cut(s) 252, 435, 564
HpyCH4V TGCA 5 cut(s) 223, 485, 616, 893, 949
HpyF10VI GCNNNNNNNGC 4 cut(s) 245, 482, 946, 1316
HpyF3I CTNAG 5 cut(s) 722, 1128, 1248, 1431, 1454
HpySE526I ACGT 3 cut(s) 252, 435, 564
Hsp92II CATG 5 cut(s) 235, 616, 681, 739, 1319
Kpn2I TCCGGA 1 cut(s) 853
Ksp22I TGATCA 1 cut(s) 799
KspI CCGCGG 1 cut(s) 337
LmnI GCTCC 4 cut(s) 4, 523, 593, 1423
Lsp1109I GCAGC 5 cut(s) 207, 469, 608, 1079, 1366
LweI GCATC 2 cut(s) 170, 958
MabI ACCWGGT 1 cut(s) 121
MaeI CTAG 2 cut(s) 128, 456
MaeII ACGT 3 cut(s) 252, 435, 564
MaeIII GTNAC 5 cut(s) 140, 416, 436, 770, 1447
MbiI CCGCTC 1 cut(s) 526
MflI RGATCY 3 cut(s) 505, 1039, 1493
MluCI AATT 9 cut(s) 70, 83, 275, 395, 497, 551, 749, 847, 1054
MluI ACGCGT 1 cut(s) 1188
MmeI TCCRAC 2 cut(s) 91, 375
Mph1103I ATGCAT 1 cut(s) 951
MroI TCCGGA 1 cut(s) 853
MseI TTAA 3 cut(s) 345, 687, 1044
MspA1I CMGCKG 1 cut(s) 336
MspI CCGG 2 cut(s) 600, 854
MspR9I CCNGG 3 cut(s) 123, 213, 1413
MvaI CCWGG 3 cut(s) 123, 213, 1413
MvnI CGCG 3 cut(s) 336, 533, 1190
MwoI GCNNNNNNNGC 4 cut(s) 245, 482, 946, 1316
NlaIII CATG 5 cut(s) 235, 616, 681, 739, 1319
NlaIV GGNNCC 2 cut(s) 1323, 1410
NmeAIII GCCGAG 2 cut(s) 309, 561
NmuCI GTSAC 4 cut(s) 140, 416, 436, 1447
NsiI ATGCAT 1 cut(s) 951
NspV TTCGAA 1 cut(s) 279
PaeR7I CTCGAG 1 cut(s) 317
PagI TCATGA 2 cut(s) 231, 735
PceI AGGCCT 1 cut(s) 620
PcsI WCGNNNNNNNCGW 2 cut(s) 441, 635
PkrI GCNGC 7 cut(s) 222, 335, 484, 598, 634, 1069, 1381
Ple19I CGATCG 2 cut(s) 108, 1237
PsiI TTATAA 1 cut(s) 1299
Psp1406I AACGTT 1 cut(s) 564
Psp6I CCWGG 3 cut(s) 121, 211, 1411
PspGI CCWGG 3 cut(s) 121, 211, 1411
PspN4I GGNNCC 2 cut(s) 1323, 1410
PspPI GGNCC 1 cut(s) 1322
PstI CTGCAG 1 cut(s) 225
PstNI CAGNNNCTG 1 cut(s) 482
PsuI RGATCY 3 cut(s) 505, 1039, 1493
PvuI CGATCG 2 cut(s) 108, 1237
RsaI GTAC 2 cut(s) 403, 1485
RsaNI GTAC 2 cut(s) 402, 1484
SacII CCGCGG 1 cut(s) 337
SaqAI TTAA 3 cut(s) 345, 687, 1044
SatI GCNGC 7 cut(s) 221, 334, 483, 597, 633, 1068, 1380
Sau96I GGNCC 1 cut(s) 1322
ScaI AGTACT 1 cut(s) 403
ScrFI CCNGG 3 cut(s) 123, 213, 1413
SexAI ACCWGGT 1 cut(s) 121
SfaNI GCATC 2 cut(s) 170, 958
SfcI CTRYAG 1 cut(s) 221
Sfr274I CTCGAG 1 cut(s) 317
Sfr303I CCGCGG 1 cut(s) 337
SfuI TTCGAA 1 cut(s) 279
SgrBI CCGCGG 1 cut(s) 337
SinI GGWCC 1 cut(s) 1322
SlaI CTCGAG 1 cut(s) 317
SmlI CTYRAG 2 cut(s) 266, 317
SmoI CTYRAG 2 cut(s) 266, 317
Sse9I AATT 9 cut(s) 70, 83, 275, 395, 497, 551, 749, 847, 1054
SseBI AGGCCT 1 cut(s) 620
SsiI CCGC 7 cut(s) 334, 336, 526, 632, 1097, 1319, 1382
SspMI CTAG 2 cut(s) 128, 456
StuI AGGCCT 1 cut(s) 620
StyD4I CCNGG 3 cut(s) 121, 211, 1411
StyI CCWWGG 1 cut(s) 1325
TaaI ACNGT 6 cut(s) 140, 163, 303, 356, 442, 654
TaiI ACGT 3 cut(s) 255, 438, 567
TasI AATT 9 cut(s) 70, 83, 275, 395, 497, 551, 749, 847, 1054
TatI WGTACW 2 cut(s) 401, 1483
TauI GCSGC 2 cut(s) 336, 635
Tru1I TTAA 3 cut(s) 345, 687, 1044
Tru9I TTAA 3 cut(s) 345, 687, 1044
TscAI CASTG 3 cut(s) 474, 1107, 1113
TseFI GTSAC 4 cut(s) 140, 416, 436, 1447
TseI GCWGC 5 cut(s) 220, 482, 596, 1067, 1379
Tsp45I GTSAC 4 cut(s) 140, 416, 436, 1447
TspGWI ACGGA 3 cut(s) 404, 507, 606
TspRI CASTG 3 cut(s) 474, 1107, 1113
VpaK11BI GGWCC 1 cut(s) 1322
XapI RAATTY 6 cut(s) 70, 83, 275, 395, 749, 847
XhoI CTCGAG 1 cut(s) 317
XspI CTAG 2 cut(s) 128, 456
ZrmI AGTACT 1 cut(s) 403
Zsp2I ATGCAT 1 cut(s) 951
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.