Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008423

Physical Location & Seq

Genomic Coordinates Reverse (-)

58969035 .. 58972097

Gene Structure 3063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0465000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGCCTCTATCCTTCTGTCATCACCATCAAAGCTCCATGCTCAACAAACCAACCGTGGCCCTATTGACTCTTCCTTTTTGCAGCGGCAAACCCGTGTTCCCAGTGGTTTCATTTGGCCAGAAGCCGACTTAGTGGCGGCTCACGAAGAGCTCGATGAACCACTGATTGATCTCAAGGGCTTCTTCAAGGGTGACGGTGTGGCAATCGAGAATGTTGCCAAGCTAATTAGGGCTTCTTGCTTAAGCCATGGCTTTTTCCAAGTCACTAACCACGGTGTGGACACCAGCCTCATCAAACTCGCTGACGACCATTTGGATCAGTTCTTTCACCTCCCCGTTAGCGAGAAGTTGAGGGTCAAGAGAGTCCCCGGTAGCCCTTGGGGTTATTCCGGCTCCCATGCTGACCGATTCTCCACCAAACTTCCCTGGAAGGAGACATTGTCTTTCGGCTTCCATGACAATGGCTCGGAGAAAGTTGTGGCGGATTTCTTTAAGTCCAGATTAGGGGATAGTTTTGAAGAGACTGGGAAGGTGTATCAAAAATACTGTGAAGCAATGAAGAGTTTGGCTCTTTCAATAATGGAGTTACTGGCAATCACCTTAGGAGTGAAGCGGTTGCACTACAGGGAATTCTTTGAGGATGCTCACTCTATCATGAGGTGCAACTACTATCCGACTTGCCAAGAGCCAAGCCTTTCTCTTGGGACTGGTCCTCATTGTGATCCAACATCCCTAACCATTCTTCACCAAGACCAAGTTGGGGGGCTTGAAGTGTTTGTCAACAACAAATGGCAATCTGTGAGACCTATTCAAGGTGCTCTGGTCATCAACATTGGTGACACCTTCACGGCACTATCGAATGGATTGTACAAGAGCTGCCTGCATCGGGCGAGTGTGAACGCAGTAAAGGAGAGGAGATCTTTGGCATTCTTTTTGTGCCCCAAGGATGACAAGGTGGTGAAACCTCCAGAGGAACTTGTTACTGAAGTAGGGACAAGGAAATACCCGGATTTCACTTGGGCCAAGCTACTCGGATTCACTCAGAACCACTACAGGGCTGATGAGTCTACCCTCCAGCAATTCTCCAAGTTTACCCAGTCCGAATCCAAATCAGTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

373

Amino Acids

41.88

Weight (kDa)

6.92

Isoelectric Point (pI)

35.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	54 - 154	2.4e-22	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	216 - 314	9.1e-34	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34540 AT3G56630
fragaria_vesca	FvH4_5g12550 FvH4_5g12570 FvH4_5g12580
malus_domestica	MD06G1212400.v1.1 MD14G1222800.v1.1 MD14G1223200.v1.1
prunus_persica	Prupe.5G218500_v2.0.a1
pyrus_communis	pycom06g18960 pycom14g18450
rosa_chinensis	RchiOBHm_Chr7g0184751
rosa_laevigata	RLG00000004953
rosa_multiflora	Rmu_co8018686.1_g000001 Rmu_sc0030785.1_g000001 Rmu_ssc0000289.1_g000016
rosa_roxburghii	Rroxscaffold_3G00269370
rosa_rugosa	Rorug06G0465000
rosa_samantha	Rh7AG077900 Rh7BG069400 Rh7CG070200 Rh7DG069600
rosa_wichuraiana	Rw7G005750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	277
AccI	GTMKAC	1 cut(s)	1067
AciI	CCGC	4 cut(s)	85, 137, 482, 613
AclWI	GGATC	2 cut(s)	324, 716
AcoI	YGGCCR	1 cut(s)	116
AcsI	RAATTY	1 cut(s)	629
AcuI	CTGAAG	1 cut(s)	1005
AdeI	CACNNNGTG	1 cut(s)	277
AfaI	GTAC	1 cut(s)	869
AfiI	CCNNNNNNNGG	6 cut(s)	277, 504, 760, 812, 886, 1054
AflII	CTTAAG	1 cut(s)	241
AgsI	TTSAA	5 cut(s)	187, 518, 576, 770, 812
AjnI	CCWGG	1 cut(s)	425
AluBI	AGCT	5 cut(s)	34, 151, 223, 876, 1027
AluI	AGCT	5 cut(s)	34, 151, 223, 876, 1027
Alw21I	GWGCWC	2 cut(s)	153, 820
Alw26I	GTCTC	3 cut(s)	428, 515, 796
AlwI	GGATC	2 cut(s)	324, 716
AoxI	GGCC	4 cut(s)	3, 58, 116, 1020
ApeKI	GCWGC	2 cut(s)	82, 876
ApoI	RAATTY	1 cut(s)	629
AspS9I	GGNCC	3 cut(s)	59, 710, 1020
AsuC2I	CCSGG	2 cut(s)	369, 1007
AsuHPI	GGTGA	7 cut(s)	15, 203, 320, 589, 737, 848, 970
AvaII	GGWCC	1 cut(s)	710
AxyI	CCTNAGG	1 cut(s)	601
BaeGI	GKGCMC	1 cut(s)	941
BalI	TGGCCA	1 cut(s)	118
BanII	GRGCYC	1 cut(s)	153
Bbv12I	GWGCWC	2 cut(s)	153, 820
BbvI	GCAGC	2 cut(s)	94, 863
BccI	CCATC	1 cut(s)	34
BceAI	ACGGC	1 cut(s)	864
BcgI	CGANNNNNNTGC	2 cut(s)	197, 231
BciT130I	CCWGG	1 cut(s)	427
BcnI	CCSGG	2 cut(s)	369, 1007
BcoDI	GTCTC	3 cut(s)	428, 515, 796
BfmI	CTRYAG	2 cut(s)	622, 1051
BfrI	CTTAAG	1 cut(s)	241
BglII	AGATCT	1 cut(s)	917
BisI	GCNGC	4 cut(s)	83, 86, 138, 877
BlsI	GCNGC	4 cut(s)	84, 87, 139, 878
Bme1390I	CCNGG	3 cut(s)	369, 427, 1007
Bme18I	GGWCC	1 cut(s)	710
BmgT120I	GGNCC	3 cut(s)	59, 710, 1020
BmiI	GGNNCC	1 cut(s)	394
BmrFI	CCNGG	3 cut(s)	369, 427, 1007
BmrI	ACTGGG	3 cut(s)	96, 534, 1090
BmsI	GCATC	2 cut(s)	631, 892
BmuI	ACTGGG	3 cut(s)	96, 534, 1090
BplI	GAGNNNNNCTC	2 cut(s)	553, 585
BpmI	CTGGAG	2 cut(s)	951, 1058
BpuEI	CTTGAG	1 cut(s)	158
BpuMI	CCSGG	2 cut(s)	369, 1007
BsaI	GGTCTC	1 cut(s)	796
BsaJI	CCNNGG	7 cut(s)	55, 247, 271, 367, 377, 425, 942
BsaXI	ACNNNNNCTCC	4 cut(s)	395, 425, 425, 455
Bsc4I	CCNNNNNNNGG	6 cut(s)	277, 504, 760, 812, 886, 1054
Bse1I	ACTGG	5 cut(s)	102, 529, 594, 712, 1096
Bse21I	CCTNAGG	1 cut(s)	601
Bse3DI	GCAATG	1 cut(s)	561
BseBI	CCWGG	1 cut(s)	427
BseDI	CCNNGG	7 cut(s)	55, 247, 271, 367, 377, 425, 942
BseGI	GGATG	3 cut(s)	646, 728, 952
BseLI	CCNNNNNNNGG	6 cut(s)	277, 504, 760, 812, 886, 1054
BseMI	GCAATG	1 cut(s)	561
BseMII	CTCAG	1 cut(s)	1055
BseNI	ACTGG	5 cut(s)	102, 529, 594, 712, 1096
BseRI	GAGGAG	1 cut(s)	928
BseSI	GKGCMC	1 cut(s)	941
BseXI	GCAGC	2 cut(s)	94, 863
BshFI	GGCC	4 cut(s)	5, 60, 118, 1022
BsiHKAI	GWGCWC	2 cut(s)	153, 820
BsiSI	CCGG	3 cut(s)	369, 390, 1007
BslFI	GGGAC	3 cut(s)	350, 718, 1006
BslI	CCNNNNNNNGG	6 cut(s)	277, 504, 760, 812, 886, 1054
BsmAI	GTCTC	3 cut(s)	428, 515, 796
BsmFI	GGGAC	3 cut(s)	350, 718, 1006
BsmI	GAATGC	1 cut(s)	926
BsnI	GGCC	4 cut(s)	5, 60, 118, 1022
Bso31I	GGTCTC	1 cut(s)	796
Bsp1286I	GDGCHC	3 cut(s)	153, 820, 941
Bsp1407I	TGTACA	1 cut(s)	867
Bsp143I	GATC	4 cut(s)	169, 316, 721, 917
Bsp19I	CCATGG	1 cut(s)	247
BspACI	CCGC	4 cut(s)	85, 137, 482, 613
BspANI	GGCC	4 cut(s)	5, 60, 118, 1022
BspCNI	CTCAG	1 cut(s)	1054
BspHI	TCATGA	1 cut(s)	654
BspLI	GGNNCC	1 cut(s)	394
BspPI	GGATC	2 cut(s)	324, 716
BspQI	GCTCTTC	1 cut(s)	141
BspTI	CTTAAG	1 cut(s)	241
BspTNI	GGTCTC	1 cut(s)	796
BsrDI	GCAATG	1 cut(s)	561
BsrGI	TGTACA	1 cut(s)	867
BsrI	ACTGG	5 cut(s)	102, 529, 594, 712, 1096
BssECI	CCNNGG	7 cut(s)	55, 247, 271, 367, 377, 425, 942
BssMI	GATC	4 cut(s)	169, 316, 721, 917
BssT1I	CCWWGG	3 cut(s)	247, 377, 942
Bst2UI	CCWGG	1 cut(s)	427
Bst4CI	ACNGT	4 cut(s)	56, 197, 275, 548
Bst6I	CTCTTC	4 cut(s)	76, 141, 513, 554
BstAFI	CTTAAG	1 cut(s)	241
BstAUI	TGTACA	1 cut(s)	867
BstC8I	GCNNGC	1 cut(s)	881
BstDEI	CTNAG	3 cut(s)	130, 601, 1041
BstDSI	CCRYGG	3 cut(s)	55, 247, 271
BstENI	CCTNNNNNAGG	1 cut(s)	810
BstF5I	GGATG	3 cut(s)	646, 728, 952
BstKTI	GATC	4 cut(s)	172, 319, 724, 920
BstMAI	GTCTC	3 cut(s)	428, 515, 796
BstMBI	GATC	4 cut(s)	169, 316, 721, 917
BstNI	CCWGG	1 cut(s)	427
BstSCI	CCNGG	3 cut(s)	367, 425, 1005
BstSFI	CTRYAG	2 cut(s)	622, 1051
BstSLI	GKGCMC	1 cut(s)	941
BstV1I	GCAGC	2 cut(s)	94, 863
BstX2I	RGATCY	1 cut(s)	917
BstXI	CCANNNNNNTGG	1 cut(s)	461
BstYI	RGATCY	1 cut(s)	917
Bsu36I	CCTNAGG	1 cut(s)	601
BsuRI	GGCC	4 cut(s)	5, 60, 118, 1022
BtgI	CCRYGG	3 cut(s)	55, 247, 271
BtsCI	GGATG	3 cut(s)	646, 728, 952
BtsIMutI	CAGTG	2 cut(s)	109, 161
Cac8I	GCNNGC	1 cut(s)	881
CciI	TCATGA	1 cut(s)	654
Cfr13I	GGNCC	3 cut(s)	59, 710, 1020
Csp6I	GTAC	1 cut(s)	868
CviAII	CATG	5 cut(s)	38, 248, 398, 455, 655
CviQI	GTAC	1 cut(s)	868
DdeI	CTNAG	3 cut(s)	130, 601, 1041
DpnI	GATC	4 cut(s)	171, 318, 723, 919
DpnII	GATC	4 cut(s)	169, 316, 721, 917
DraIII	CACNNNGTG	1 cut(s)	277
EaeI	YGGCCR	1 cut(s)	116
Eam1104I	CTCTTC	4 cut(s)	76, 141, 513, 554
EarI	CTCTTC	4 cut(s)	76, 141, 513, 554
EciI	GGCGGA	1 cut(s)	497
Ecl136II	GAGCTC	1 cut(s)	151
Eco130I	CCWWGG	3 cut(s)	247, 377, 942
Eco24I	GRGCYC	1 cut(s)	153
Eco31I	GGTCTC	1 cut(s)	796
Eco47I	GGWCC	1 cut(s)	710
Eco53kI	GAGCTC	1 cut(s)	151
Eco57I	CTGAAG	1 cut(s)	1005
Eco81I	CCTNAGG	1 cut(s)	601
EcoICRI	GAGCTC	1 cut(s)	151
EcoNI	CCTNNNNNAGG	1 cut(s)	810
EcoRI	GAATTC	1 cut(s)	629
EcoRII	CCWGG	1 cut(s)	425
EcoT14I	CCWWGG	3 cut(s)	247, 377, 942
EcoT38I	GRGCYC	1 cut(s)	153
ErhI	CCWWGG	3 cut(s)	247, 377, 942
FaeI	CATG	5 cut(s)	41, 251, 401, 458, 658
FaiI	YATR	5 cut(s)	39, 249, 399, 456, 656
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FaqI	GGGAC	3 cut(s)	350, 718, 1006
FatI	CATG	5 cut(s)	37, 247, 397, 454, 654
FblI	GTMKAC	1 cut(s)	1067
Fnu4HI	GCNGC	4 cut(s)	83, 86, 138, 877
FokI	GGATG	3 cut(s)	653, 715, 959
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	4 cut(s)	83, 86, 138, 877
GluI	GCNGC	4 cut(s)	83, 86, 138, 877
GsuI	CTGGAG	2 cut(s)	951, 1058
HaeIII	GGCC	4 cut(s)	5, 60, 118, 1022
HapII	CCGG	3 cut(s)	369, 390, 1007
Hin1II	CATG	5 cut(s)	41, 251, 401, 458, 658
HincII	GTYRAC	1 cut(s)	781
HindII	GTYRAC	1 cut(s)	781
HinfI	GANTC	6 cut(s)	68, 363, 408, 1035, 1064, 1103
HpaII	CCGG	3 cut(s)	369, 390, 1007
HphI	GGTGA	7 cut(s)	15, 203, 320, 589, 737, 848, 970
Hpy166II	GTNNAC	5 cut(s)	280, 781, 898, 1068, 1092
Hpy188I	TCNGA	5 cut(s)	469, 675, 1034, 1044, 1102
Hpy188III	TCNNGA	6 cut(s)	143, 208, 358, 498, 655, 968
Hpy8I	GTNNAC	5 cut(s)	280, 781, 898, 1068, 1092
HpyAV	CCTTC	4 cut(s)	23, 424, 523, 853
HpyCH4III	ACNGT	4 cut(s)	56, 197, 275, 548
HpyCH4V	TGCA	4 cut(s)	82, 619, 663, 883
HpyF3I	CTNAG	3 cut(s)	130, 601, 1041
Hsp92II	CATG	5 cut(s)	41, 251, 401, 458, 658
Kzo9I	GATC	4 cut(s)	169, 316, 721, 917
LguI	GCTCTTC	1 cut(s)	141
LmnI	GCTCC	2 cut(s)	39, 398
Lsp1109I	GCAGC	2 cut(s)	94, 863
LweI	GCATC	2 cut(s)	631, 892
MaeIII	GTNAC	5 cut(s)	191, 262, 585, 836, 979
MalI	GATC	4 cut(s)	171, 318, 723, 919
MboI	GATC	4 cut(s)	169, 316, 721, 917
MboII	GAAGA	6 cut(s)	63, 158, 175, 530, 571, 734
MflI	RGATCY	1 cut(s)	917
MhlI	GDGCHC	3 cut(s)	153, 820, 941
MlsI	TGGCCA	1 cut(s)	118
MluCI	AATT	4 cut(s)	225, 629, 1079, 1117
MluNI	TGGCCA	1 cut(s)	118
MlyI	GAGTC	3 cut(s)	62, 372, 1073
MmeI	TCCRAC	2 cut(s)	698, 749
Mox20I	TGGCCA	1 cut(s)	118
MscI	TGGCCA	1 cut(s)	118
MseI	TTAA	4 cut(s)	242, 492, 1116, 1120
MslI	CAYNNNNRTG	1 cut(s)	459
Msp20I	TGGCCA	1 cut(s)	118
MspA1I	CMGCKG	1 cut(s)	85
MspCI	CTTAAG	1 cut(s)	241
MspI	CCGG	3 cut(s)	369, 390, 1007
MspR9I	CCNGG	3 cut(s)	369, 427, 1007
Mva1269I	GAATGC	1 cut(s)	926
MvaI	CCWGG	1 cut(s)	427
NciI	CCSGG	2 cut(s)	369, 1007
NcoI	CCATGG	1 cut(s)	247
NdeII	GATC	4 cut(s)	169, 316, 721, 917
NlaIII	CATG	5 cut(s)	41, 251, 401, 458, 658
NlaIV	GGNNCC	1 cut(s)	394
NmuCI	GTSAC	3 cut(s)	191, 262, 836
PacI	TTAATTAA	1 cut(s)	1120
PagI	TCATGA	1 cut(s)	654
PciSI	GCTCTTC	1 cut(s)	141
PcsI	WCGNNNNNNNCGW	2 cut(s)	150, 854
PctI	GAATGC	1 cut(s)	926
PfeI	GAWTC	3 cut(s)	408, 1035, 1103
PflFI	GACNNNGTC	1 cut(s)	439
PflMI	CCANNNNNTGG	1 cut(s)	277
PkrI	GCNGC	4 cut(s)	84, 87, 139, 878
PleI	GAGTC	3 cut(s)	62, 371, 1072
PpsI	GAGTC	3 cut(s)	62, 371, 1072
Psp124BI	GAGCTC	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	425
PspGI	CCWGG	1 cut(s)	425
PspN4I	GGNNCC	1 cut(s)	394
PspPI	GGNCC	3 cut(s)	59, 710, 1020
PsuI	RGATCY	1 cut(s)	917
PsyI	GACNNNGTC	1 cut(s)	439
RsaI	GTAC	1 cut(s)	869
RsaNI	GTAC	1 cut(s)	868
RseI	CAYNNNNRTG	1 cut(s)	459
SacI	GAGCTC	1 cut(s)	153
SapI	GCTCTTC	1 cut(s)	141
SaqAI	TTAA	4 cut(s)	242, 492, 1116, 1120
SatI	GCNGC	4 cut(s)	83, 86, 138, 877
Sau3AI	GATC	4 cut(s)	169, 316, 721, 917
Sau96I	GGNCC	3 cut(s)	59, 710, 1020
SchI	GAGTC	3 cut(s)	62, 372, 1073
ScrFI	CCNGG	3 cut(s)	369, 427, 1007
SduI	GDGCHC	3 cut(s)	153, 820, 941
SfaNI	GCATC	2 cut(s)	631, 892
SfcI	CTRYAG	2 cut(s)	622, 1051
SinI	GGWCC	1 cut(s)	710
SmiMI	CAYNNNNRTG	1 cut(s)	459
SmlI	CTYRAG	2 cut(s)	173, 241
SmoI	CTYRAG	2 cut(s)	173, 241
Sse9I	AATT	4 cut(s)	225, 629, 1079, 1117
SsiI	CCGC	4 cut(s)	85, 137, 482, 613
SstI	GAGCTC	1 cut(s)	153
StyD4I	CCNGG	3 cut(s)	367, 425, 1005
StyI	CCWWGG	3 cut(s)	247, 377, 942
TaaI	ACNGT	4 cut(s)	56, 197, 275, 548
TaqI	TCGA	3 cut(s)	153, 207, 857
TaqII	GACCGA	1 cut(s)	420
TasI	AATT	4 cut(s)	225, 629, 1079, 1117
TatI	WGTACW	1 cut(s)	867
TauI	GCSGC	2 cut(s)	88, 140
TfiI	GAWTC	3 cut(s)	408, 1035, 1103
Tru1I	TTAA	4 cut(s)	242, 492, 1116, 1120
Tru9I	TTAA	4 cut(s)	242, 492, 1116, 1120
TscAI	CASTG	2 cut(s)	109, 168
TseFI	GTSAC	3 cut(s)	191, 262, 836
TseI	GCWGC	2 cut(s)	82, 876
Tsp45I	GTSAC	3 cut(s)	191, 262, 836
TspDTI	ATGAA	3 cut(s)	100, 171, 572
TspRI	CASTG	2 cut(s)	109, 168
Tth111I	GACNNNGTC	1 cut(s)	439
Van91I	CCANNNNNTGG	1 cut(s)	277
Vha464I	CTTAAG	1 cut(s)	241
VpaK11BI	GGWCC	1 cut(s)	710
XagI	CCTNNNNNAGG	1 cut(s)	810
XapI	RAATTY	1 cut(s)	629
XcmI	CCANNNNNNNNNTGG	1 cut(s)	755
XmiI	GTMKAC	1 cut(s)	1067

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.