Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030785.1

Orthogroup ID

OG0008423

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 590

Gene Structure 590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030785.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 590 bp

aatccacggcatcatcacggccaacccgtcaaacgtggagcacatgctgaaaaccaacttcgagaactacccgaaaggcgagcggttcatcgatctcctccgagactttctcggcggcggaatcttcaacgccgacggcgagctctggaaggtccagagaaagacggccagctatgccttcaacaccaaatcactcaggaacttcgtcatggataacgtcagcttcgagattcagaccaggttggttccacttttggcgcgagcagccgaaacgggatgtcgtttggacctccaagacgtcttggagcggtttgcgttcgacaatatttgcaagatggctttcaacgtcgacccaggttgtctcggcggcgatgggaaatccgccgccgagtttatgcgggcgtttgatgacgccaccacactttgctctggaaggttcctctatgcctttcgattcatccttatcttaaaaaaattcttcaatattggatccgagaggaggttgaaggattcaattgcaaccgttcataacttcgctgatgacataataaggtctcgaatggagaacaatagctacgaacagcaggatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

196

Amino Acids

22.34

Weight (kDa)

6.37

Isoelectric Point (pI)

36.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34540 AT3G56630
fragaria_vesca	FvH4_5g12550 FvH4_5g12570 FvH4_5g12580
malus_domestica	MD06G1212400.v1.1 MD14G1222800.v1.1 MD14G1223200.v1.1
prunus_persica	Prupe.5G218500_v2.0.a1
pyrus_communis	pycom06g18960 pycom14g18450
rosa_chinensis	RchiOBHm_Chr7g0184751
rosa_laevigata	RLG00000004953
rosa_multiflora	Rmu_co8018686.1_g000001 Rmu_sc0030785.1_g000001 Rmu_ssc0000289.1_g000016
rosa_roxburghii	Rroxscaffold_3G00269370
rosa_rugosa	Rorug06G0465000
rosa_samantha	Rh7AG077900 Rh7BG069400 Rh7CG070200 Rh7DG069600
rosa_wichuraiana	Rw7G005750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	301
AccBSI	CCGCTC	2 cut(s)	83, 308
AccI	GTMKAC	1 cut(s)	349
AccII	CGCG	1 cut(s)	260
AciI	CCGC	8 cut(s)	83, 115, 118, 308, 367, 382, 385, 398
AclWI	GGATC	2 cut(s)	484, 497
AcoI	YGGCCR	2 cut(s)	19, 166
AcsI	RAATTY	1 cut(s)	474
AcyI	GRCGYC	2 cut(s)	298, 412
AfiI	CCNNNNNNNGG	1 cut(s)	499
AgsI	TTSAA	6 cut(s)	128, 182, 344, 482, 506, 514
AjnI	CCWGG	2 cut(s)	237, 353
AluBI	AGCT	4 cut(s)	143, 172, 223, 574
AluI	AGCT	4 cut(s)	143, 172, 223, 574
Alw21I	GWGCWC	2 cut(s)	43, 145
Alw26I	GTCTC	3 cut(s)	97, 366, 559
AlwI	GGATC	2 cut(s)	484, 497
AoxI	GGCC	2 cut(s)	19, 166
ApeKI	GCWGC	1 cut(s)	264
ApoI	RAATTY	1 cut(s)	474
AspLEI	GCGC	1 cut(s)	260
AspS9I	GGNCC	2 cut(s)	152, 287
AvaII	GGWCC	2 cut(s)	152, 287
BamHI	GGATCC	1 cut(s)	489
BanII	GRGCYC	1 cut(s)	145
Bbv12I	GWGCWC	2 cut(s)	43, 145
BbvI	GCAGC	1 cut(s)	276
BccI	CCATC	2 cut(s)	329, 366
BceAI	ACGGC	4 cut(s)	23, 34, 152, 181
BciT130I	CCWGG	2 cut(s)	239, 355
BcoDI	GTCTC	3 cut(s)	97, 366, 559
BisI	GCNGC	4 cut(s)	116, 265, 368, 385
BlsI	GCNGC	4 cut(s)	117, 266, 369, 386
Bme1390I	CCNGG	2 cut(s)	239, 355
Bme18I	GGWCC	2 cut(s)	152, 287
BmgT120I	GGNCC	2 cut(s)	152, 287
BmiI	GGNNCC	3 cut(s)	247, 438, 491
BmrFI	CCNGG	2 cut(s)	239, 355
BmsI	GCATC	1 cut(s)	19
BplI	GAGNNNNNCTC	2 cut(s)	94, 126
Bsa29I	ATCGAT	1 cut(s)	91
BsaHI	GRCGYC	2 cut(s)	298, 412
BsaI	GGTCTC	1 cut(s)	559
BsaJI	CCNNGG	2 cut(s)	5, 353
Bsc4I	CCNNNNNNNGG	1 cut(s)	499
BseBI	CCWGG	2 cut(s)	239, 355
BseCI	ATCGAT	1 cut(s)	91
BseDI	CCNNGG	2 cut(s)	5, 353
BseGI	GGATG	2 cut(s)	282, 457
BseLI	CCNNNNNNNGG	1 cut(s)	499
BseMII	CTCAG	1 cut(s)	209
BseRI	GAGGAG	2 cut(s)	87, 512
BseXI	GCAGC	1 cut(s)	276
Bsh1236I	CGCG	1 cut(s)	260
BshFI	GGCC	2 cut(s)	21, 168
BshVI	ATCGAT	1 cut(s)	91
BsiHKAI	GWGCWC	2 cut(s)	43, 145
BslI	CCNNNNNNNGG	1 cut(s)	499
BsmAI	GTCTC	3 cut(s)	97, 366, 559
BsnI	GGCC	2 cut(s)	21, 168
Bso31I	GGTCTC	1 cut(s)	559
Bsp1286I	GDGCHC	2 cut(s)	43, 145
Bsp143I	GATC	2 cut(s)	92, 489
BspACI	CCGC	8 cut(s)	83, 115, 118, 308, 367, 382, 385, 398
BspANI	GGCC	2 cut(s)	21, 168
BspCNI	CTCAG	1 cut(s)	208
BspDI	ATCGAT	1 cut(s)	91
BspFNI	CGCG	1 cut(s)	260
BspLI	GGNNCC	3 cut(s)	247, 438, 491
BspPI	GGATC	2 cut(s)	484, 497
BspTNI	GGTCTC	1 cut(s)	559
BsrBI	CCGCTC	2 cut(s)	83, 308
BssECI	CCNNGG	2 cut(s)	5, 353
BssMI	GATC	2 cut(s)	92, 489
BssNI	GRCGYC	2 cut(s)	298, 412
Bst2UI	CCWGG	2 cut(s)	239, 355
Bst4CI	ACNGT	1 cut(s)	524
BstACI	GRCGYC	2 cut(s)	298, 412
BstC8I	GCNNGC	5 cut(s)	81, 141, 170, 262, 400
BstDEI	CTNAG	1 cut(s)	195
BstDSI	CCRYGG	1 cut(s)	5
BstF5I	GGATG	2 cut(s)	282, 457
BstFNI	CGCG	1 cut(s)	260
BstHHI	GCGC	1 cut(s)	260
BstKTI	GATC	2 cut(s)	95, 492
BstMAI	GTCTC	3 cut(s)	97, 366, 559
BstMBI	GATC	2 cut(s)	92, 489
BstMWI	GCNNNNNNNGC	2 cut(s)	174, 264
BstNI	CCWGG	2 cut(s)	239, 355
BstNSI	RCATGY	1 cut(s)	47
BstSCI	CCNGG	2 cut(s)	237, 353
BstUI	CGCG	1 cut(s)	260
BstV1I	GCAGC	1 cut(s)	276
BstX2I	RGATCY	1 cut(s)	489
BstYI	RGATCY	1 cut(s)	489
Bsu15I	ATCGAT	1 cut(s)	91
BsuRI	GGCC	2 cut(s)	21, 168
BsuTUI	ATCGAT	1 cut(s)	91
BtgI	CCRYGG	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	385
BtsCI	GGATG	2 cut(s)	282, 457
Cac8I	GCNNGC	5 cut(s)	81, 141, 170, 262, 400
CfoI	GCGC	1 cut(s)	260
Cfr13I	GGNCC	2 cut(s)	152, 287
ClaI	ATCGAT	1 cut(s)	91
CseI	GACGC	1 cut(s)	420
CsiI	ACCWGGT	1 cut(s)	237
CviAII	CATG	2 cut(s)	44, 209
CviJI	RGCY	8 cut(s)	21, 143, 168, 172, 223, 267, 339, 574
CviKI_1	RGCY	8 cut(s)	21, 143, 168, 172, 223, 267, 339, 574
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	2 cut(s)	94, 491
DpnII	GATC	2 cut(s)	92, 489
EaeI	YGGCCR	2 cut(s)	19, 166
EciI	GGCGGA	2 cut(s)	133, 371
Ecl136II	GAGCTC	1 cut(s)	143
Eco24I	GRGCYC	1 cut(s)	145
Eco31I	GGTCTC	1 cut(s)	559
Eco47I	GGWCC	2 cut(s)	152, 287
Eco53kI	GAGCTC	1 cut(s)	143
EcoICRI	GAGCTC	1 cut(s)	143
EcoRII	CCWGG	2 cut(s)	237, 353
EcoT38I	GRGCYC	1 cut(s)	145
FaeI	CATG	2 cut(s)	47, 212
FaiI	YATR	7 cut(s)	45, 175, 210, 396, 445, 529, 546
FatI	CATG	2 cut(s)	43, 208
FauI	CCCGC	1 cut(s)	391
FblI	GTMKAC	1 cut(s)	349
Fnu4HI	GCNGC	4 cut(s)	116, 265, 368, 385
FokI	GGATG	2 cut(s)	289, 444
FriOI	GRGCYC	1 cut(s)	145
Fsp4HI	GCNGC	4 cut(s)	116, 265, 368, 385
GlaI	GCGC	1 cut(s)	259
GluI	GCNGC	4 cut(s)	116, 265, 368, 385
HaeIII	GGCC	2 cut(s)	21, 168
HgaI	GACGC	1 cut(s)	420
HhaI	GCGC	1 cut(s)	260
Hin1I	GRCGYC	2 cut(s)	298, 412
Hin1II	CATG	2 cut(s)	47, 212
Hin6I	GCGC	1 cut(s)	258
HinP1I	GCGC	1 cut(s)	258
HincII	GTYRAC	1 cut(s)	350
HindII	GTYRAC	1 cut(s)	350
HinfI	GANTC	4 cut(s)	121, 230, 454, 510
Hpy166II	GTNNAC	1 cut(s)	350
Hpy188I	TCNGA	3 cut(s)	102, 235, 494
Hpy188III	TCNNGA	7 cut(s)	62, 146, 155, 197, 227, 430, 556
Hpy8I	GTNNAC	1 cut(s)	350
Hpy99I	CGWCG	2 cut(s)	138, 351
HpyAV	CCTTC	4 cut(s)	143, 188, 427, 500
HpyCH4III	ACNGT	1 cut(s)	524
HpyCH4IV	ACGT	4 cut(s)	34, 217, 298, 346
HpyCH4V	TGCA	2 cut(s)	331, 519
HpyF10VI	GCNNNNNNNGC	2 cut(s)	174, 264
HpyF3I	CTNAG	1 cut(s)	195
HpySE526I	ACGT	4 cut(s)	34, 217, 298, 346
Hsp92I	GRCGYC	2 cut(s)	298, 412
Hsp92II	CATG	2 cut(s)	47, 212
HspAI	GCGC	1 cut(s)	258
Kzo9I	GATC	2 cut(s)	92, 489
LmnI	GCTCC	2 cut(s)	38, 305
Lsp1109I	GCAGC	1 cut(s)	276
LweI	GCATC	1 cut(s)	19
MabI	ACCWGGT	1 cut(s)	237
MaeII	ACGT	4 cut(s)	34, 217, 298, 346
MalI	GATC	2 cut(s)	94, 491
MbiI	CCGCTC	2 cut(s)	83, 308
MboI	GATC	2 cut(s)	92, 489
MboII	GAAGA	2 cut(s)	116, 470
MfeI	CAATTG	1 cut(s)	514
MflI	RGATCY	1 cut(s)	489
MhlI	GDGCHC	2 cut(s)	43, 145
MluCI	AATT	2 cut(s)	474, 514
MnlI	CCTC	5 cut(s)	108, 300, 450, 490, 493
MseI	TTAA	1 cut(s)	468
MspR9I	CCNGG	2 cut(s)	239, 355
MunI	CAATTG	1 cut(s)	514
MvaI	CCWGG	2 cut(s)	239, 355
MvnI	CGCG	1 cut(s)	260
MwoI	GCNNNNNNNGC	2 cut(s)	174, 264
NdeII	GATC	2 cut(s)	92, 489
NlaIII	CATG	2 cut(s)	47, 212
NlaIV	GGNNCC	3 cut(s)	247, 438, 491
NmeAIII	GCCGAG	3 cut(s)	91, 343, 413
NspI	RCATGY	1 cut(s)	47
PcsI	WCGNNNNNNNCGW	3 cut(s)	24, 136, 223
PfeI	GAWTC	4 cut(s)	121, 230, 454, 510
PkrI	GCNGC	4 cut(s)	117, 266, 369, 386
Psp124BI	GAGCTC	1 cut(s)	145
Psp6I	CCWGG	2 cut(s)	237, 353
PspGI	CCWGG	2 cut(s)	237, 353
PspN4I	GGNNCC	3 cut(s)	247, 438, 491
PspPI	GGNCC	2 cut(s)	152, 287
PsrI	GAACNNNNNNTAC	2 cut(s)	558, 590
PsuI	RGATCY	1 cut(s)	489
SacI	GAGCTC	1 cut(s)	145
SalI	GTCGAC	1 cut(s)	348
SaqAI	TTAA	1 cut(s)	468
SatI	GCNGC	4 cut(s)	116, 265, 368, 385
Sau3AI	GATC	2 cut(s)	92, 489
Sau96I	GGNCC	2 cut(s)	152, 287
ScrFI	CCNGG	2 cut(s)	239, 355
SduI	GDGCHC	2 cut(s)	43, 145
SexAI	ACCWGGT	1 cut(s)	237
SfaNI	GCATC	1 cut(s)	19
SinI	GGWCC	2 cut(s)	152, 287
Sse9I	AATT	2 cut(s)	474, 514
SsiI	CCGC	8 cut(s)	83, 115, 118, 308, 367, 382, 385, 398
SspI	AATATT	2 cut(s)	326, 485
SstI	GAGCTC	1 cut(s)	145
StyD4I	CCNGG	2 cut(s)	237, 353
TaaI	ACNGT	1 cut(s)	524
TaiI	ACGT	4 cut(s)	37, 220, 301, 349
TaqI	TCGA	7 cut(s)	61, 91, 226, 319, 349, 452, 557
TasI	AATT	2 cut(s)	474, 514
TauI	GCSGC	3 cut(s)	118, 370, 387
TfiI	GAWTC	4 cut(s)	121, 230, 454, 510
Tru1I	TTAA	1 cut(s)	468
Tru9I	TTAA	1 cut(s)	468
TseI	GCWGC	1 cut(s)	264
TspDTI	ATGAA	3 cut(s)	77, 446, 516
VpaK11BI	GGWCC	2 cut(s)	152, 287
XapI	RAATTY	1 cut(s)	474
XceI	RCATGY	1 cut(s)	47
XmiI	GTMKAC	1 cut(s)	349
ZraI	GACGTC	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.