AT3G57170

N-acetylglucosaminyl transferase component (Gpi1)

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
21159373 .. 21163322
3950 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G57170.2

Sequence Viewer

Length: 1683 bp
ATGATTCTGCAGAGCATAGAATTATGGAATTCCATTCAAGTTCTAGATTGCATCATATACACTGGAATGGGGATATTGTATCTCAATGCGATGTCCACGTATGTCATAGTCTATGACACTCCAGTGTTTGGTTCTCACCATTTCTCGTTAAGCTTTTCGAATTCTTCTCCTCAGACAAAAGCTCCTCTTAAGAAACCCAAGTGGGTTGATGATCTTCACAATAGGAAACCTCTGAATGAAATGGAAACTGTTATTCTTTCCTTAAATTGCGCCGCAGCTGCCAAGATTGCCTATAAGAAGATATCCACGCAGCTGGAGACTTCTTCCCAGAACTTTTCCATTAGTTACTTGATATCTTCTTTAACATGGCGGTTACTCGCCACAATTTTAGGCTCTTTATCAAGTCTGTATTATAGCCTTGCCCAATTCTTCTATTTACTTTCAAGTTTTCTGATTTTTTCATGGGTGCACATCGCATCGAGGAGGGTACTCAAGAATACATGGATCAACTTCAGGATACGTAGTTGTCAGATCTTATATTGGCCAATCTTCCTTGAAGAGATTGACATGATGTCCATATCCTGTGTGAAACATGCAGAGGAAGCTGCACTGCAAAGACATTCTACATGGTCGGCCATGGCTGTTGATCTTGTTTTGGGGAACTTGATTGGTCTAGGTCTACTGTTTAACACCGAATCTGTCTGCTCATTTGTATTCGACTTTGCAAAGGAGTTTACGAATGGTATTTTGCGGTCTGGTAGTGTGTGGTTGATGGGAGTTCCAGCGGGTTTTAAGTTAAATACAGAATTGGCTGGAGTTTTGGGCATGGTATCTCTTAATGTAATACAGATATGGTCTACTCTCTGGGTCTTCATGGCTTCTTTCATCTTTTGTTTGATAAGAGTAATTGCCATCCTTGGAATTACTTTTGGTGCCACAGTATCTGCCGCATTTGTCATAGATGTCATTACTTTTGCAACACTTCATATAATGGCTCTTCACTGGGCAATCACACTTGTGTATTCTCACCAAATCCAAGCCTTAGCAGCTTTGTGGAGGCTTTTCAGAGGGCGAAAATTGAATCCTCTACGTCAAAGAATGGACAGCTATGGTTACACTGTGAAGCAACATGTAGTGGGATCTCTTCTGTTCACTCCTCTTCTGCTTCTCTTGCCAACAACATCAGTTTTCTACATCTTTTTCACCATTACGAGCACTACAATAAACTCCATATGTATGTTGATTGAATTTGCCATCTCCGTCATCCATGCAACACCATATGCAGAGGTTATGATTTGGCTTGTTAGGCGTAAAAGATTCCCCTGTGGTGTTTGGTTTGAAATGGAACACTGTGGAGAGCATATCCTTAAATCCAATGATGCCTTCGAAGACTCCAAAAGTCTACTAGAAGAACACGGTACTCCTGAGAAGAATTCTCTAATGGTTTCCAATCTTCGCAGCAATTTTCTAACCTTAGGACAGATTCTTTTGCCTCACTATAAAACAATTTTTTCAGGAATATCAGCTTCTTCTCTGACAACATCAGCTCGCGGAGTCCTCAGTGGGAAGAGAATGCCATCAAAACTGGGGCTTGATCTTCCTCCTCCGAGGCCATGGCTCCACATGCCATTGAGACAGTACTGGATGCTATGCCATAATTCCATCAGCTCATGTGGCAAATGA

Protein Analysis

560

Amino Acids

63.25

Weight (kDa)

9.13

Isoelectric Point (pI)

42.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gpi1 PF05024 170 - 441 1.6e-76 N-acetylglucosaminyl transferase component (Gpi1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 932
AccB7I CCANNNNNTGG 1 cut(s) 128
AccI GTMKAC 3 cut(s) 679, 857, 1402
AccII CGCG 1 cut(s) 1551
AciI CCGC 6 cut(s) 273, 370, 751, 785, 948, 1551
AclWI GGATC 2 cut(s) 512, 1147
AcoI YGGCCR 2 cut(s) 542, 633
AcsI RAATTY 4 cut(s) 28, 160, 1247, 1432
AcuI CTGAAG 1 cut(s) 496
AfaI GTAC 3 cut(s) 489, 1420, 1640
AfiI CCNNNNNNNGG 1 cut(s) 128
AflII CTTAAG 1 cut(s) 188
AflIII ACRYGT 1 cut(s) 1129
AgsI TTSAA 6 cut(s) 38, 444, 557, 1081, 1247, 1340
AhdI GACNNNNNGTC 1 cut(s) 571
AjuI GAANNNNNNNTTGG 2 cut(s) 1367, 1399
AleI CACNNNNGTG 2 cut(s) 122, 1016
Alw21I GWGCWC 2 cut(s) 471, 1217
Alw26I GTCTC 2 cut(s) 311, 1627
Alw44I GTGCAC 1 cut(s) 467
AlwI GGATC 2 cut(s) 512, 1147
AlwNI CAGNNNCTG 1 cut(s) 944
AoxI GGCC 3 cut(s) 542, 633, 1610
ApaLI GTGCAC 1 cut(s) 467
ApeKI GCWGC 6 cut(s) 275, 278, 310, 605, 1046, 1458
ApoI RAATTY 4 cut(s) 28, 160, 1247, 1432
AspLEI GCGC 1 cut(s) 272
AsuHPI GGTGA 3 cut(s) 128, 1019, 1195
AsuII TTCGAA 2 cut(s) 158, 1386
AxyI CCTNAGG 1 cut(s) 1474
BaeGI GKGCMC 1 cut(s) 471
BalI TGGCCA 1 cut(s) 544
BanI GGYRCC 1 cut(s) 932
BbsI GAAGAC 2 cut(s) 862, 1395
Bbv12I GWGCWC 2 cut(s) 471, 1217
BbvI GCAGC 6 cut(s) 265, 287, 322, 592, 1058, 1470
BccI CCATC 5 cut(s) 766, 920, 1262, 1585, 1670
BciVI GTATCC 1 cut(s) 510
BcoDI GTCTC 2 cut(s) 311, 1627
BfaI CTAG 3 cut(s) 44, 674, 1406
BfmI CTRYAG 1 cut(s) 8
BfrI CTTAAG 1 cut(s) 188
BfuI GTATCC 1 cut(s) 510
BglII AGATCT 1 cut(s) 531
BisI GCNGC 8 cut(s) 273, 276, 279, 311, 606, 948, 1047, 1459
BlsI GCNGC 8 cut(s) 274, 277, 280, 312, 607, 949, 1048, 1460
BmcAI AGTACT 1 cut(s) 1640
BmeRI GACNNNNNGTC 1 cut(s) 571
BmiI GGNNCC 2 cut(s) 934, 1619
BmrI ACTGGG 2 cut(s) 1012, 1595
BmsI GCATC 4 cut(s) 60, 485, 1369, 1635
BmuI ACTGGG 2 cut(s) 1012, 1595
BpiI GAAGAC 2 cut(s) 862, 1395
BpmI CTGGAG 3 cut(s) 105, 335, 834
Bpu10I CCTNAGC 1 cut(s) 1042
Bpu14I TTCGAA 2 cut(s) 158, 1386
BpuEI CTTGAG 1 cut(s) 476
BsaAI YACGTR 2 cut(s) 99, 521
BsaJI CCNNGG 4 cut(s) 636, 916, 1607, 1613
BsaXI ACNNNNNCTCC 2 cut(s) 166, 196
Bsc4I CCNNNNNNNGG 1 cut(s) 128
Bse1I ACTGG 5 cut(s) 67, 122, 1007, 1590, 1646
Bse21I CCTNAGG 1 cut(s) 1474
BseDI CCNNGG 4 cut(s) 636, 916, 1607, 1613
BseGI GGATG 3 cut(s) 912, 1263, 1650
BseLI CCNNNNNNNGG 1 cut(s) 128
BseMII CTCAG 3 cut(s) 185, 1416, 1573
BseNI ACTGG 5 cut(s) 67, 122, 1007, 1590, 1646
BseRI GAGGAG 5 cut(s) 159, 174, 496, 1146, 1593
BseSI GKGCMC 1 cut(s) 471
BseXI GCAGC 6 cut(s) 265, 287, 322, 592, 1058, 1470
BsgI GTGCAG 1 cut(s) 591
Bsh1236I CGCG 1 cut(s) 1551
BshFI GGCC 3 cut(s) 544, 635, 1612
BshNI GGYRCC 1 cut(s) 932
BsiHKAI GWGCWC 2 cut(s) 471, 1217
BslI CCNNNNNNNGG 1 cut(s) 128
BsmAI GTCTC 2 cut(s) 311, 1627
BsmI GAATGC 1 cut(s) 1578
BsnI GGCC 3 cut(s) 544, 635, 1612
Bsp119I TTCGAA 2 cut(s) 158, 1386
Bsp1286I GDGCHC 2 cut(s) 471, 1217
Bsp143I GATC 6 cut(s) 211, 504, 531, 646, 1139, 1594
Bsp19I CCATGG 2 cut(s) 636, 1613
BspACI CCGC 6 cut(s) 273, 370, 751, 785, 948, 1551
BspANI GGCC 3 cut(s) 544, 635, 1612
BspCNI CTCAG 3 cut(s) 184, 1417, 1572
BspFNI CGCG 1 cut(s) 1551
BspLI GGNNCC 2 cut(s) 934, 1619
BspMAI CTGCAG 1 cut(s) 12
BspPI GGATC 2 cut(s) 512, 1147
BspQI GCTCTTC 1 cut(s) 1002
BspT104I TTCGAA 2 cut(s) 158, 1386
BspT107I GGYRCC 1 cut(s) 932
BspTI CTTAAG 1 cut(s) 188
BsrI ACTGG 5 cut(s) 67, 122, 1007, 1590, 1646
BssECI CCNNGG 4 cut(s) 636, 916, 1607, 1613
BssMI GATC 6 cut(s) 211, 504, 531, 646, 1139, 1594
BssT1I CCWWGG 3 cut(s) 636, 916, 1613
Bst4CI ACNGT 7 cut(s) 250, 684, 940, 1120, 1352, 1418, 1638
Bst6I CTCTTC 5 cut(s) 552, 1002, 1149, 1164, 1562
BstAFI CTTAAG 1 cut(s) 188
BstBAI YACGTR 2 cut(s) 99, 521
BstBI TTCGAA 2 cut(s) 158, 1386
BstC8I GCNNGC 1 cut(s) 1549
BstDEI CTNAG 5 cut(s) 171, 1042, 1425, 1474, 1559
BstDSI CCRYGG 2 cut(s) 636, 1613
BstF5I GGATG 3 cut(s) 912, 1263, 1650
BstFNI CGCG 1 cut(s) 1551
BstHHI GCGC 1 cut(s) 272
BstKTI GATC 6 cut(s) 214, 507, 534, 649, 1142, 1597
BstMAI GTCTC 2 cut(s) 311, 1627
BstMBI GATC 6 cut(s) 211, 504, 531, 646, 1139, 1594
BstMWI GCNNNNNNNGC 8 cut(s) 278, 287, 602, 1046, 1171, 1306, 1624, 1674
BstNSI RCATGY 3 cut(s) 596, 1133, 1627
BstSFI CTRYAG 1 cut(s) 8
BstSLI GKGCMC 1 cut(s) 471
BstSNI TACGTA 1 cut(s) 521
BstUI CGCG 1 cut(s) 1551
BstV1I GCAGC 6 cut(s) 265, 287, 322, 592, 1058, 1470
BstV2I GAAGAC 2 cut(s) 862, 1395
BstX2I RGATCY 2 cut(s) 531, 1139
BstXI CCANNNNNNTGG 1 cut(s) 313
BstYI RGATCY 2 cut(s) 531, 1139
Bsu36I CCTNAGG 1 cut(s) 1474
BsuI GTATCC 1 cut(s) 510
BsuRI GGCC 3 cut(s) 544, 635, 1612
BtgI CCRYGG 2 cut(s) 636, 1613
BtgZI GCGATG 2 cut(s) 104, 457
BtsCI GGATG 3 cut(s) 912, 1263, 1650
BtsI GCAGTG 1 cut(s) 608
BtsIMutI CAGTG 7 cut(s) 60, 129, 608, 1000, 1116, 1348, 1567
Cac8I GCNNGC 1 cut(s) 1549
CaiI CAGNNNCTG 1 cut(s) 944
CfoI GCGC 1 cut(s) 272
Csp6I GTAC 3 cut(s) 488, 1419, 1639
CviQI GTAC 3 cut(s) 488, 1419, 1639
DdeI CTNAG 5 cut(s) 171, 1042, 1425, 1474, 1559
DpnI GATC 6 cut(s) 213, 506, 533, 648, 1141, 1596
DpnII GATC 6 cut(s) 211, 504, 531, 646, 1139, 1594
DriI GACNNNNNGTC 1 cut(s) 571
EaeI YGGCCR 2 cut(s) 542, 633
Eam1104I CTCTTC 5 cut(s) 552, 1002, 1149, 1164, 1562
Eam1105I GACNNNNNGTC 1 cut(s) 571
EarI CTCTTC 5 cut(s) 552, 1002, 1149, 1164, 1562
Eco105I TACGTA 1 cut(s) 521
Eco130I CCWWGG 3 cut(s) 636, 916, 1613
Eco32I GATATC 2 cut(s) 303, 354
Eco57I CTGAAG 1 cut(s) 496
Eco81I CCTNAGG 1 cut(s) 1474
EcoRI GAATTC 3 cut(s) 28, 160, 1432
EcoRV GATATC 2 cut(s) 303, 354
EcoT14I CCWWGG 3 cut(s) 636, 916, 1613
ErhI CCWWGG 3 cut(s) 636, 916, 1613
FalI AAGNNNNNCTT 2 cut(s) 171, 203
FauI CCCGC 1 cut(s) 778
FauNDI CATATG 2 cut(s) 1232, 1279
FblI GTMKAC 3 cut(s) 679, 857, 1402
Fnu4HI GCNGC 8 cut(s) 273, 276, 279, 311, 606, 948, 1047, 1459
FokI GGATG 3 cut(s) 899, 1250, 1657
Fsp4HI GCNGC 8 cut(s) 273, 276, 279, 311, 606, 948, 1047, 1459
FspBI CTAG 3 cut(s) 44, 674, 1406
GlaI GCGC 1 cut(s) 271
GluI GCNGC 8 cut(s) 273, 276, 279, 311, 606, 948, 1047, 1459
GsuI CTGGAG 3 cut(s) 105, 335, 834
HaeIII GGCC 3 cut(s) 544, 635, 1612
HhaI GCGC 1 cut(s) 272
Hin6I GCGC 1 cut(s) 270
HinP1I GCGC 1 cut(s) 270
HindIII AAGCTT 1 cut(s) 151
HinfI GANTC 7 cut(s) 4, 695, 1081, 1317, 1391, 1483, 1554
HphI GGTGA 3 cut(s) 128, 1019, 1195
Hpy166II GTNNAC 7 cut(s) 96, 469, 680, 735, 858, 1152, 1403
Hpy188I TCNGA 7 cut(s) 174, 234, 453, 531, 1067, 1536, 1608
Hpy188III TCNNGA 5 cut(s) 44, 493, 514, 1424, 1515
Hpy8I GTNNAC 7 cut(s) 96, 469, 680, 735, 858, 1152, 1403
HpyAV CCTTC 1 cut(s) 1393
HpyCH4III ACNGT 7 cut(s) 250, 684, 940, 1120, 1352, 1418, 1638
HpyCH4IV ACGT 3 cut(s) 98, 520, 1090
HpyF10VI GCNNNNNNNGC 8 cut(s) 278, 287, 602, 1046, 1171, 1306, 1624, 1674
HpyF3I CTNAG 5 cut(s) 171, 1042, 1425, 1474, 1559
HpySE526I ACGT 3 cut(s) 98, 520, 1090
HspAI GCGC 1 cut(s) 270
Kzo9I GATC 6 cut(s) 211, 504, 531, 646, 1139, 1594
LguI GCTCTTC 1 cut(s) 1002
LmnI GCTCC 2 cut(s) 187, 1623
Lsp1109I GCAGC 6 cut(s) 265, 287, 322, 592, 1058, 1470
LweI GCATC 4 cut(s) 60, 485, 1369, 1635
MaeI CTAG 3 cut(s) 44, 674, 1406
MaeII ACGT 3 cut(s) 98, 520, 1090
MaeIII GTNAC 3 cut(s) 344, 372, 1112
MalI GATC 6 cut(s) 213, 506, 533, 648, 1141, 1596
MboI GATC 6 cut(s) 211, 504, 531, 646, 1139, 1594
MflI RGATCY 2 cut(s) 531, 1139
MhlI GDGCHC 2 cut(s) 471, 1217
MlsI TGGCCA 1 cut(s) 544
MluNI TGGCCA 1 cut(s) 544
MlyI GAGTC 2 cut(s) 1385, 1563
Mox20I TGGCCA 1 cut(s) 544
MscI TGGCCA 1 cut(s) 544
MseI TTAA 9 cut(s) 149, 189, 263, 362, 687, 792, 797, 837, 1368
MslI CAYNNNNRTG 4 cut(s) 65, 122, 1016, 1235
Msp20I TGGCCA 1 cut(s) 544
MspA1I CMGCKG 3 cut(s) 278, 313, 785
MspCI CTTAAG 1 cut(s) 188
Mva1269I GAATGC 1 cut(s) 1578
MvnI CGCG 1 cut(s) 1551
MwoI GCNNNNNNNGC 8 cut(s) 278, 287, 602, 1046, 1171, 1306, 1624, 1674
NcoI CCATGG 2 cut(s) 636, 1613
NdeI CATATG 2 cut(s) 1232, 1279
NdeII GATC 6 cut(s) 211, 504, 531, 646, 1139, 1594
NlaIV GGNNCC 2 cut(s) 934, 1619
NspI RCATGY 3 cut(s) 596, 1133, 1627
NspV TTCGAA 2 cut(s) 158, 1386
OliI CACNNNNGTG 2 cut(s) 122, 1016
PciI ACATGT 1 cut(s) 1129
PciSI GCTCTTC 1 cut(s) 1002
PctI GAATGC 1 cut(s) 1578
PfeI GAWTC 5 cut(s) 4, 695, 1081, 1317, 1483
PflMI CCANNNNNTGG 1 cut(s) 128
PkrI GCNGC 8 cut(s) 274, 277, 280, 312, 607, 949, 1048, 1460
PleI GAGTC 2 cut(s) 1385, 1562
PpsI GAGTC 2 cut(s) 1385, 1562
Ppu21I YACGTR 2 cut(s) 99, 521
PscI ACATGT 1 cut(s) 1129
PspN4I GGNNCC 2 cut(s) 934, 1619
PstI CTGCAG 1 cut(s) 12
PstNI CAGNNNCTG 1 cut(s) 944
PsuI RGATCY 2 cut(s) 531, 1139
PvuII CAGCTG 2 cut(s) 278, 313
RsaI GTAC 3 cut(s) 489, 1420, 1640
RsaNI GTAC 3 cut(s) 488, 1419, 1639
RseI CAYNNNNRTG 4 cut(s) 65, 122, 1016, 1235
SapI GCTCTTC 1 cut(s) 1002
SaqAI TTAA 9 cut(s) 149, 189, 263, 362, 687, 792, 797, 837, 1368
SatI GCNGC 8 cut(s) 273, 276, 279, 311, 606, 948, 1047, 1459
Sau3AI GATC 6 cut(s) 211, 504, 531, 646, 1139, 1594
ScaI AGTACT 1 cut(s) 1640
SchI GAGTC 2 cut(s) 1385, 1563
SduI GDGCHC 2 cut(s) 471, 1217
SfaNI GCATC 4 cut(s) 60, 485, 1369, 1635
SfcI CTRYAG 1 cut(s) 8
SfuI TTCGAA 2 cut(s) 158, 1386
SmiMI CAYNNNNRTG 4 cut(s) 65, 122, 1016, 1235
SmlI CTYRAG 2 cut(s) 188, 491
SmoI CTYRAG 2 cut(s) 188, 491
SnaBI TACGTA 1 cut(s) 521
SsiI CCGC 6 cut(s) 273, 370, 751, 785, 948, 1551
SspMI CTAG 3 cut(s) 44, 674, 1406
StyI CCWWGG 3 cut(s) 636, 916, 1613
TaaI ACNGT 7 cut(s) 250, 684, 940, 1120, 1352, 1418, 1638
TaiI ACGT 3 cut(s) 101, 523, 1093
TaqI TCGA 4 cut(s) 158, 479, 717, 1386
TatI WGTACW 1 cut(s) 1638
TauI GCSGC 2 cut(s) 275, 950
TfiI GAWTC 5 cut(s) 4, 695, 1081, 1317, 1483
Tru1I TTAA 9 cut(s) 149, 189, 263, 362, 687, 792, 797, 837, 1368
Tru9I TTAA 9 cut(s) 149, 189, 263, 362, 687, 792, 797, 837, 1368
TscAI CASTG 7 cut(s) 67, 129, 615, 1007, 1123, 1355, 1567
TseI GCWGC 6 cut(s) 275, 278, 310, 605, 1046, 1458
TspDTI ATGAA 5 cut(s) 252, 450, 862, 874, 974
TspGWI ACGGA 1 cut(s) 1249
TspRI CASTG 7 cut(s) 67, 129, 615, 1007, 1123, 1355, 1567
Van91I CCANNNNNTGG 1 cut(s) 128
Vha464I CTTAAG 1 cut(s) 188
VneI GTGCAC 1 cut(s) 467
XapI RAATTY 4 cut(s) 28, 160, 1247, 1432
XbaI TCTAGA 1 cut(s) 43
XceI RCATGY 3 cut(s) 596, 1133, 1627
XmiI GTMKAC 3 cut(s) 679, 857, 1402
XspI CTAG 3 cut(s) 44, 674, 1406
ZrmI AGTACT 1 cut(s) 1640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.