Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0005134

Physical Location & Seq

Genomic Coordinates Reverse (-)

190505 .. 192453

Gene Structure 1949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G000500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGTTATTCTATGTCATTCTTCAGTTTCTCTATCGGCTTCTGAATTACGCATCAGATTCATGGGTATACATTAGATCAGTGAAGGTATTCAGCAGTTCAAGGATAAATATCAGAATCCGTTGTTCTCAGATCTTGTATTGGCCAATCTTTCTTCAAGATAATGGCATGAGGCCACCATCAAGTGTTAAATATGCAGAGAAAGCTGCACTGTGTAAGCATTCCATGTGGTCAAGTTTAGCTGTTGATGTACTTCTGGGAAACTTGTTTGGTTTGGCACTGTTGTGTCATGCAGAATCTGCTTGCATATGGGTCCTGAAATTTGCCAATGACATTACAAACGAGTTATTGCGCTCAGGTTGTGTGTGGTTGATGGGAGTCCCTGCAGGTTTTAAGTTAAACACGGAATTGGCAGGAGTTCTTGGGATGATTTCTCTAACTGCTATCCAGATTTGGTCTACCATTTGGATCTTTTTGGGGTTTCACTTCCTTTATTTCATTAGAGGACTTGCTATATCAGGAATCATTTTTGGGGTCACTTTACCTGCTGCTTTGATAACAGACTTGATTGCACTAGCAACGTTACATGTGTCCACTCTTCATTGGTTGATATCGATTTTATATTCAACTCAGATACGAGATAAACTCTCATGTAATATACAGGCATTAGCAGCTTTGTGGCGCCTTTTCAGGAGGTCATATTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0019538 GO:0019637 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0071704 GO:0090407 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Gpi1

Protein Analysis

235

Amino Acids

26.53

Weight (kDa)

9.45

Isoelectric Point (pI)

41.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57170 AT3G57170
fragaria_vesca	FvH4_6g24900 FvH4_6g24900 FvH4_6g24900 FvH4_6g24900 FvH4_6g24900 FvH4_6g24900 FvH4_6g24900 FvH4_6g24900
malus_domestica	MD07G1151600.v1.1 MD12G1089200.v1.1 MD14G1081800.v1.1
prunus_persica	Prupe.4G274500_v2.0.a1 Prupe.5G000500_v2.0.a1
pyrus_communis	pycom07g15000 pycom12g07440 pycom14g07110
rosa_chinensis	RchiOBHm_Chr2g0124601
rosa_laevigata	RLG00000018807
rosa_multiflora	Rmu_sc0042054.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119850
rosa_rugosa	Rorug02G0251500 Rorug02G0251500
rosa_samantha	Rh2AG310200 Rh2BG318700 Rh2CG297100 Rh2CG302000 Rh2DG333900
rosa_wichuraiana	Rw2G025090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	703
Acc36I	ACCTGC	2 cut(s)	374, 550
AccB1I	GGYRCC	1 cut(s)	678
AccI	GTMKAC	2 cut(s)	66, 455
AclI	AACGTT	1 cut(s)	578
AclWI	GGATC	1 cut(s)	473
AcoI	YGGCCR	1 cut(s)	140
AcsI	RAATTY	1 cut(s)	317
AcuI	CTGAAG	1 cut(s)	5
AcyI	GRCGYC	1 cut(s)	679
AfaI	GTAC	1 cut(s)	249
AflIII	ACRYGT	1 cut(s)	583
AgsI	TTSAA	3 cut(s)	99, 155, 624
AleI	CACNNNNGTG	1 cut(s)	280
AluBI	AGCT	3 cut(s)	203, 239, 671
AluI	AGCT	3 cut(s)	203, 239, 671
AlwI	GGATC	1 cut(s)	473
AlwNI	CAGNNNCTG	1 cut(s)	296
AoxI	GGCC	2 cut(s)	140, 170
ApeKI	GCWGC	3 cut(s)	203, 545, 668
ApoI	RAATTY	1 cut(s)	317
Asp700I	GAANNNNTTC	1 cut(s)	86
AspLEI	GCGC	2 cut(s)	351, 681
AspS9I	GGNCC	1 cut(s)	310
AvaII	GGWCC	1 cut(s)	310
BalI	TGGCCA	1 cut(s)	142
BanI	GGYRCC	1 cut(s)	678
BbvI	GCAGC	3 cut(s)	190, 532, 680
BccI	CCATC	2 cut(s)	184, 364
BfaI	CTAG	1 cut(s)	572
BfmI	CTRYAG	1 cut(s)	381
BfoI	RGCGCY	1 cut(s)	682
BfuAI	ACCTGC	2 cut(s)	374, 550
BglII	AGATCT	1 cut(s)	129
BisI	GCNGC	3 cut(s)	204, 546, 669
BlsI	GCNGC	3 cut(s)	205, 547, 670
Bme18I	GGWCC	1 cut(s)	310
BmgT120I	GGNCC	1 cut(s)	310
BmiI	GGNNCC	2 cut(s)	311, 680
BmsI	GCATC	1 cut(s)	59
BplI	GAGNNNNNCTC	2 cut(s)	627, 659
Bpu10I	CCTNAGC	1 cut(s)	352
Bsa29I	ATCGAT	1 cut(s)	611
BsaBI	GATNNNNATC	1 cut(s)	107
BsaHI	GRCGYC	1 cut(s)	679
Bse8I	GATNNNNATC	1 cut(s)	107
BseCI	ATCGAT	1 cut(s)	611
BseGI	GGATG	1 cut(s)	429
BseJI	GATNNNNATC	1 cut(s)	107
BseMII	CTCAG	3 cut(s)	140, 366, 641
BseXI	GCAGC	3 cut(s)	190, 532, 680
BsgI	GTGCAG	1 cut(s)	189
BshFI	GGCC	2 cut(s)	142, 172
BshNI	GGYRCC	1 cut(s)	678
BshVI	ATCGAT	1 cut(s)	611
BslFI	GGGAC	1 cut(s)	362
BsmFI	GGGAC	1 cut(s)	362
BsmI	GAATGC	1 cut(s)	217
BsnI	GGCC	2 cut(s)	142, 172
Bsp143I	GATC	3 cut(s)	74, 129, 465
BspANI	GGCC	2 cut(s)	142, 172
BspCNI	CTCAG	3 cut(s)	139, 365, 640
BspDI	ATCGAT	1 cut(s)	611
BspLI	GGNNCC	2 cut(s)	311, 680
BspMAI	CTGCAG	1 cut(s)	385
BspMI	ACCTGC	2 cut(s)	374, 550
BspPI	GGATC	1 cut(s)	473
BspT107I	GGYRCC	1 cut(s)	678
BssMI	GATC	3 cut(s)	74, 129, 465
BssNAI	GTATAC	1 cut(s)	67
BssNI	GRCGYC	1 cut(s)	679
Bst1107I	GTATAC	1 cut(s)	67
Bst4CI	ACNGT	2 cut(s)	210, 279
Bst6I	CTCTTC	1 cut(s)	600
BstACI	GRCGYC	1 cut(s)	679
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstC8I	GCNNGC	1 cut(s)	301
BstDEI	CTNAG	3 cut(s)	126, 352, 627
BstF5I	GGATG	1 cut(s)	429
BstH2I	RGCGCY	1 cut(s)	682
BstHHI	GCGC	2 cut(s)	351, 681
BstKTI	GATC	3 cut(s)	77, 132, 468
BstMBI	GATC	3 cut(s)	74, 129, 465
BstMWI	GCNNNNNNNGC	3 cut(s)	200, 296, 668
BstNSI	RCATGY	1 cut(s)	587
BstSFI	CTRYAG	1 cut(s)	381
BstV1I	GCAGC	3 cut(s)	190, 532, 680
BstX2I	RGATCY	2 cut(s)	129, 465
BstYI	RGATCY	2 cut(s)	129, 465
BstZ17I	GTATAC	1 cut(s)	67
Bsu15I	ATCGAT	1 cut(s)	611
BsuRI	GGCC	2 cut(s)	142, 172
BsuTUI	ATCGAT	1 cut(s)	611
BtsCI	GGATG	1 cut(s)	429
BtsIMutI	CAGTG	3 cut(s)	84, 206, 275
BveI	ACCTGC	2 cut(s)	374, 550
Cac8I	GCNNGC	1 cut(s)	301
CaiI	CAGNNNCTG	1 cut(s)	296
CfoI	GCGC	2 cut(s)	351, 681
Cfr13I	GGNCC	1 cut(s)	310
ClaI	ATCGAT	1 cut(s)	611
Csp6I	GTAC	1 cut(s)	248
CviAII	CATG	6 cut(s)	60, 166, 223, 287, 584, 648
CviJI	RGCY	6 cut(s)	37, 142, 172, 203, 239, 671
CviKI_1	RGCY	6 cut(s)	37, 142, 172, 203, 239, 671
CviQI	GTAC	1 cut(s)	248
DdeI	CTNAG	3 cut(s)	126, 352, 627
DinI	GGCGCC	1 cut(s)	680
DpnI	GATC	3 cut(s)	76, 131, 467
DpnII	GATC	3 cut(s)	74, 129, 465
EaeI	YGGCCR	1 cut(s)	140
Eam1104I	CTCTTC	1 cut(s)	600
EarI	CTCTTC	1 cut(s)	600
Eco32I	GATATC	1 cut(s)	609
Eco47I	GGWCC	1 cut(s)	310
Eco57I	CTGAAG	1 cut(s)	5
EcoO109I	RGGNCCY	1 cut(s)	310
EcoRV	GATATC	1 cut(s)	609
EgeI	GGCGCC	1 cut(s)	680
EheI	GGCGCC	1 cut(s)	680
FaeI	CATG	6 cut(s)	63, 169, 226, 290, 587, 651
FaqI	GGGAC	1 cut(s)	362
FatI	CATG	6 cut(s)	59, 165, 222, 286, 583, 647
FauNDI	CATATG	1 cut(s)	305
FblI	GTMKAC	2 cut(s)	66, 455
Fnu4HI	GCNGC	3 cut(s)	204, 546, 669
FokI	GGATG	1 cut(s)	436
Fsp4HI	GCNGC	3 cut(s)	204, 546, 669
FspBI	CTAG	1 cut(s)	572
GlaI	GCGC	2 cut(s)	350, 680
GluI	GCNGC	3 cut(s)	204, 546, 669
HaeII	RGCGCY	1 cut(s)	682
HaeIII	GGCC	2 cut(s)	142, 172
HhaI	GCGC	2 cut(s)	351, 681
Hin1I	GRCGYC	1 cut(s)	679
Hin1II	CATG	6 cut(s)	63, 169, 226, 290, 587, 651
Hin6I	GCGC	2 cut(s)	349, 679
HinP1I	GCGC	2 cut(s)	349, 679
HinfI	GANTC	5 cut(s)	56, 114, 293, 375, 519
Hpy166II	GTNNAC	3 cut(s)	67, 456, 591
Hpy188I	TCNGA	5 cut(s)	42, 55, 113, 129, 630
Hpy188III	TCNNGA	5 cut(s)	155, 313, 445, 516, 688
Hpy8I	GTNNAC	3 cut(s)	67, 456, 591
HpyAV	CCTTC	1 cut(s)	76
HpyCH4III	ACNGT	2 cut(s)	210, 279
HpyCH4IV	ACGT	1 cut(s)	578
HpyCH4V	TGCA	6 cut(s)	194, 206, 290, 303, 383, 569
HpyF10VI	GCNNNNNNNGC	3 cut(s)	200, 296, 668
HpyF3I	CTNAG	3 cut(s)	126, 352, 627
HpySE526I	ACGT	1 cut(s)	578
Hsp92I	GRCGYC	1 cut(s)	679
Hsp92II	CATG	6 cut(s)	63, 169, 226, 290, 587, 651
HspAI	GCGC	2 cut(s)	349, 679
KasI	GGCGCC	1 cut(s)	678
Kzo9I	GATC	3 cut(s)	74, 129, 465
Lsp1109I	GCAGC	3 cut(s)	190, 532, 680
LweI	GCATC	1 cut(s)	59
MaeI	CTAG	1 cut(s)	572
MaeII	ACGT	1 cut(s)	578
MaeIII	GTNAC	2 cut(s)	532, 579
MalI	GATC	3 cut(s)	76, 131, 467
MboI	GATC	3 cut(s)	74, 129, 465
MboII	GAAGA	3 cut(s)	11, 143, 587
MflI	RGATCY	2 cut(s)	129, 465
MlsI	TGGCCA	1 cut(s)	142
MluCI	AATT	3 cut(s)	43, 317, 404
MluNI	TGGCCA	1 cut(s)	142
Mly113I	GGCGCC	1 cut(s)	679
MlyI	GAGTC	1 cut(s)	384
MnlI	CCTC	3 cut(s)	162, 494, 684
Mox20I	TGGCCA	1 cut(s)	142
MroXI	GAANNNNTTC	1 cut(s)	86
MscI	TGGCCA	1 cut(s)	142
MseI	TTAA	3 cut(s)	186, 390, 395
MslI	CAYNNNNRTG	1 cut(s)	280
Msp20I	TGGCCA	1 cut(s)	142
Mva1269I	GAATGC	1 cut(s)	217
MwoI	GCNNNNNNNGC	3 cut(s)	200, 296, 668
NarI	GGCGCC	1 cut(s)	679
NdeI	CATATG	1 cut(s)	305
NdeII	GATC	3 cut(s)	74, 129, 465
NlaIII	CATG	6 cut(s)	63, 169, 226, 290, 587, 651
NlaIV	GGNNCC	2 cut(s)	311, 680
NmuCI	GTSAC	1 cut(s)	532
NspI	RCATGY	1 cut(s)	587
OliI	CACNNNNGTG	1 cut(s)	280
PciI	ACATGT	1 cut(s)	583
PctI	GAATGC	1 cut(s)	217
PdmI	GAANNNNTTC	1 cut(s)	86
PfeI	GAWTC	4 cut(s)	56, 114, 293, 519
PkrI	GCNGC	3 cut(s)	205, 547, 670
PleI	GAGTC	1 cut(s)	383
PluTI	GGCGCC	1 cut(s)	682
PpsI	GAGTC	1 cut(s)	383
PpuMI	RGGWCCY	1 cut(s)	310
PscI	ACATGT	1 cut(s)	583
PsiI	TTATAA	1 cut(s)	703
Psp1406I	AACGTT	1 cut(s)	578
Psp5II	RGGWCCY	1 cut(s)	310
PspN4I	GGNNCC	2 cut(s)	311, 680
PspPI	GGNCC	1 cut(s)	310
PspPPI	RGGWCCY	1 cut(s)	310
PstI	CTGCAG	1 cut(s)	385
PstNI	CAGNNNCTG	1 cut(s)	296
PsuI	RGATCY	2 cut(s)	129, 465
RsaI	GTAC	1 cut(s)	249
RsaNI	GTAC	1 cut(s)	248
RseI	CAYNNNNRTG	1 cut(s)	280
SaqAI	TTAA	3 cut(s)	186, 390, 395
SatI	GCNGC	3 cut(s)	204, 546, 669
Sau3AI	GATC	3 cut(s)	74, 129, 465
Sau96I	GGNCC	1 cut(s)	310
SbfI	CCTGCAGG	1 cut(s)	385
SchI	GAGTC	1 cut(s)	384
SdaI	CCTGCAGG	1 cut(s)	385
SetI	ASST	9 cut(s)	87, 205, 241, 358, 388, 544, 581, 673, 695
SfaNI	GCATC	1 cut(s)	59
SfcI	CTRYAG	1 cut(s)	381
SfoI	GGCGCC	1 cut(s)	680
SinI	GGWCC	1 cut(s)	310
SmiMI	CAYNNNNRTG	1 cut(s)	280
Sse8387I	CCTGCAGG	1 cut(s)	385
Sse9I	AATT	3 cut(s)	43, 317, 404
SspDI	GGCGCC	1 cut(s)	678
SspMI	CTAG	1 cut(s)	572
TaaI	ACNGT	2 cut(s)	210, 279
TaiI	ACGT	1 cut(s)	581
TaqI	TCGA	1 cut(s)	611
TasI	AATT	3 cut(s)	43, 317, 404
TatI	WGTACW	1 cut(s)	247
TfiI	GAWTC	4 cut(s)	56, 114, 293, 519
Tru1I	TTAA	3 cut(s)	186, 390, 395
Tru9I	TTAA	3 cut(s)	186, 390, 395
TscAI	CASTG	3 cut(s)	84, 213, 282
TseFI	GTSAC	1 cut(s)	532
TseI	GCWGC	3 cut(s)	203, 545, 668
Tsp45I	GTSAC	1 cut(s)	532
TspDTI	ATGAA	3 cut(s)	48, 484, 587
TspGWI	ACGGA	2 cut(s)	107, 416
TspRI	CASTG	3 cut(s)	84, 213, 282
VpaK11BI	GGWCC	1 cut(s)	310
XapI	RAATTY	1 cut(s)	317
XceI	RCATGY	1 cut(s)	587
XmiI	GTMKAC	2 cut(s)	66, 455
XmnI	GAANNNNTTC	1 cut(s)	86
XspI	CTAG	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.