FvH4_6g24900

N-acetylglucosaminyl transferase component (Gpi1)

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
18862088 .. 18868506
6419 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g24900.t4

Sequence Viewer

Length: 1596 bp
ATGTCCACGTATCTGATAGTCTATGAGACTCCCACCTATGGAGCACACCATTTCTCATTACGTCTTTGGAATTCTTTGGACCAAGCAAACGCTCTGTTGAGAAAACCCAAGTGGGTTCATGAACTAAACCAAAAGCAGCCACTTCTTGATTTGGATACAGTCATTCTGGCAATTAATAGCGCCTCTGCCGCTGACAAAACTTTCGAAAGATGCTTGGGTGCCAAGAAATCTTTTGTTCGCTTTAACATTATTTACATGTTCCTTGGCTTCATATGGAAACTATTATCTGTTCTTGTAGCTTCGTTATCCACATTATTCTACGTCATTCTTCAGTTTCTGTATAAGCTTCTGAATTATGCATCAGACTCTTGGACATACATTATATTAGTAAAGGTATTCAGCAGTGCAAGGATAAATATGAGGATCCGTTTTTCTCAGATCTTGTACTGGCCAATTTTTCTTCAAGATAATGGCATGAGGTCTCAATCAAGTGTAGAATATGCAGAGAAAGCCGCATTGTTTAAGCATTCCATGTGGTCAAGTTTAGCTGTTGATGTACTTCTGGGGAACTTGATTGGTTTGGCACTGTTGTATCATGCAGAATCTGTTTGCATGTTGGTTCTCAAATTTGCCAGTGACGTTACCAATGAATTGTTGCGCTCTGGTTGTGTGTGGTTGATGGGAGTCCCTGCAGGTTTTAAGTTAAACACGGAATTAGCAGGAGTTCTTGGGATGATTTCTCTAACTGCTATCCAGATTTGGTCTACCATTTGGATCTTTTTGGGCTTTCACTTTCTTTATGTCATTAGAGGACTTGCCATTTCTGGGATCATTTTTGGGTTGACTATACCTGCTGCTTTGATCATAGACTTGATTGCACTAGTAACATTACATGTGTCTACTCTCCATTGGTTGATATCTCTTCTGTATTCAACTCAGATACAGGCATTAGCAGCTTTGTGGCGCCTTTTCAGGGGTCGAAAGTGGAATCCACTTCGTCAGAGATTAGATAGTTATGACTACACGGTCAAGCAGCACATCGTTGGATCTCTTCTGTTCACACCGCTGTTGCTTCTATTGCCCACAACTTCTGTTTTCTATATCTTCTTTACCATTGTGAACACAACCATCAGCTTAATCTGTATACTGATTGAAGTCACTATATCCGTTATTCATGCTACTCCATATATCAAAGTTTTTCTGTGGTTGGTCAGACCAAGAAGATTCCCTTCTGGGATATGGTTTGAAATCAATTCTGTTTGGAGTCAGAGCCTTGATTCTTGTGAGGATATGGATTCACCGGCAGCAAATATGCTGAGAAATAAAGACATAACTGAAGTTAAACCTTCTGTTGTGGTTTCAGTTCTTCATAGCAACTTCTTGACTGTAGGACAAATAATTTTGCCTCACTACACTAAGGTTCTTTCTGGGAAACCCCGAACCGTGCTTGCTTCTGCAGCATATGGAGTTCTCACTGGCAGAAGAATTCCATCTACAATTGGAACTGATCTCCCAACATTTCCATGGATGATAATTCCGTGCAAACAGTTTTGGCGCCTCTGCTACGAGTCGATTCTCAAATGCTACAGATCATGA

Protein Analysis

532

Amino Acids

60.4

Weight (kDa)

9.48

Isoelectric Point (pI)

37.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gpi1 PF05024 139 - 325 4.8e-42 N-acetylglucosaminyl transferase component (Gpi1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1025
Acc36I ACCTGC 2 cut(s) 683, 859
AccB1I GGYRCC 3 cut(s) 218, 963, 1554
AccI GTMKAC 3 cut(s) 764, 899, 1144
AciI CCGC 3 cut(s) 189, 513, 1064
AclWI GGATC 5 cut(s) 418, 431, 782, 836, 1054
AcoI YGGCCR 1 cut(s) 449
AcsI RAATTY 3 cut(s) 70, 626, 1485
AcuI CTGAAG 2 cut(s) 314, 1356
AcyI GRCGYC 2 cut(s) 964, 1555
AfaI GTAC 2 cut(s) 446, 558
AfiI CCNNNNNNNGG 3 cut(s) 38, 825, 973
AflIII ACRYGT 2 cut(s) 255, 892
AgsI TTSAA 4 cut(s) 464, 933, 1154, 1247
AhlI ACTAGT 1 cut(s) 880
AluBI AGCT 5 cut(s) 299, 346, 548, 956, 1134
AluI AGCT 5 cut(s) 299, 346, 548, 956, 1134
Alw21I GWGCWC 1 cut(s) 46
Alw26I GTCTC 2 cut(s) 20, 486
AlwI GGATC 5 cut(s) 418, 431, 782, 836, 1054
AlwNI CAGNNNCTG 2 cut(s) 337, 605
AoxI GGCC 1 cut(s) 449
ApeKI GCWGC 6 cut(s) 136, 854, 953, 1033, 1304, 1457
ApoI RAATTY 3 cut(s) 70, 626, 1485
ArsI GACNNNNNNTTYG 2 cut(s) 185, 217
AseI ATTAAT 1 cut(s) 174
AspLEI GCGC 4 cut(s) 182, 660, 966, 1557
AspS9I GGNCC 1 cut(s) 79
AsuHPI GGTGA 1 cut(s) 1290
AsuII TTCGAA 1 cut(s) 204
AvaII GGWCC 1 cut(s) 79
BaeI ACNNNNGTAYC 2 cut(s) 575, 608
BalI TGGCCA 1 cut(s) 451
BamHI GGATCC 1 cut(s) 423
BanI GGYRCC 3 cut(s) 218, 963, 1554
Bbv12I GWGCWC 1 cut(s) 46
BbvI GCAGC 6 cut(s) 148, 841, 965, 1045, 1316, 1469
BccI CCATC 3 cut(s) 673, 1136, 1498
BciVI GTATCC 1 cut(s) 148
BclI TGATCA 1 cut(s) 861
BcoDI GTCTC 2 cut(s) 20, 486
BcuI ACTAGT 1 cut(s) 880
BfaI CTAG 1 cut(s) 881
BfmI CTRYAG 4 cut(s) 690, 1386, 1455, 1585
BfoI RGCGCY 3 cut(s) 183, 967, 1558
BfuAI ACCTGC 2 cut(s) 683, 859
BfuI GTATCC 1 cut(s) 148
BglII AGATCT 1 cut(s) 438
BisI GCNGC 8 cut(s) 137, 189, 513, 855, 954, 1034, 1305, 1458
BlsI GCNGC 8 cut(s) 138, 190, 514, 856, 955, 1035, 1306, 1459
Bme18I GGWCC 1 cut(s) 79
BmgT120I GGNCC 1 cut(s) 79
BmiI GGNNCC 4 cut(s) 220, 425, 965, 1556
BmsI GCATC 2 cut(s) 200, 368
Bpu14I TTCGAA 1 cut(s) 204
BsaAI YACGTR 1 cut(s) 9
BsaHI GRCGYC 2 cut(s) 964, 1555
BsaI GGTCTC 1 cut(s) 486
BsaJI CCNNGG 2 cut(s) 262, 1523
Bsc4I CCNNNNNNNGG 3 cut(s) 38, 825, 973
Bse118I RCCGGY 1 cut(s) 1300
Bse1I ACTGG 3 cut(s) 452, 633, 1480
BseDI CCNNGG 2 cut(s) 262, 1523
BseGI GGATG 2 cut(s) 738, 1533
BseLI CCNNNNNNNGG 3 cut(s) 38, 825, 973
BseMII CTCAG 3 cut(s) 449, 950, 1307
BseNI ACTGG 3 cut(s) 452, 633, 1480
BseXI GCAGC 6 cut(s) 148, 841, 965, 1045, 1316, 1469
BshFI GGCC 1 cut(s) 451
BshNI GGYRCC 3 cut(s) 218, 963, 1554
BsiHKAI GWGCWC 1 cut(s) 46
BsiSI CCGG 1 cut(s) 1301
BslFI GGGAC 1 cut(s) 671
BslI CCNNNNNNNGG 3 cut(s) 38, 825, 973
BsmAI GTCTC 2 cut(s) 20, 486
BsmFI GGGAC 1 cut(s) 671
BsmI GAATGC 1 cut(s) 526
BsnI GGCC 1 cut(s) 451
Bso31I GGTCTC 1 cut(s) 486
Bsp119I TTCGAA 1 cut(s) 204
Bsp1286I GDGCHC 1 cut(s) 46
Bsp143I GATC 8 cut(s) 423, 438, 774, 828, 861, 1046, 1507, 1589
Bsp19I CCATGG 1 cut(s) 1523
BspACI CCGC 3 cut(s) 189, 513, 1064
BspANI GGCC 1 cut(s) 451
BspCNI CTCAG 3 cut(s) 448, 949, 1308
BspHI TCATGA 2 cut(s) 118, 1592
BspLI GGNNCC 4 cut(s) 220, 425, 965, 1556
BspMAI CTGCAG 2 cut(s) 694, 1459
BspMI ACCTGC 2 cut(s) 683, 859
BspPI GGATC 5 cut(s) 418, 431, 782, 836, 1054
BspT104I TTCGAA 1 cut(s) 204
BspT107I GGYRCC 3 cut(s) 218, 963, 1554
BspTNI GGTCTC 1 cut(s) 486
BsrFI RCCGGY 1 cut(s) 1300
BsrI ACTGG 3 cut(s) 452, 633, 1480
BssAI RCCGGY 1 cut(s) 1300
BssECI CCNNGG 2 cut(s) 262, 1523
BssMI GATC 8 cut(s) 423, 438, 774, 828, 861, 1046, 1507, 1589
BssNAI GTATAC 1 cut(s) 1145
BssNI GRCGYC 2 cut(s) 964, 1555
BssT1I CCWWGG 2 cut(s) 262, 1523
Bst1107I GTATAC 1 cut(s) 1145
Bst4CI ACNGT 6 cut(s) 160, 588, 1027, 1387, 1444, 1548
Bst6I CTCTTC 2 cut(s) 927, 1056
BstACI GRCGYC 2 cut(s) 964, 1555
BstBAI YACGTR 1 cut(s) 9
BstBI TTCGAA 1 cut(s) 204
BstC8I GCNNGC 1 cut(s) 1449
BstDEI CTNAG 4 cut(s) 435, 936, 1316, 1416
BstDSI CCRYGG 1 cut(s) 1523
BstF5I GGATG 2 cut(s) 738, 1533
BstH2I RGCGCY 3 cut(s) 183, 967, 1558
BstHHI GCGC 4 cut(s) 182, 660, 966, 1557
BstKTI GATC 8 cut(s) 426, 441, 777, 831, 864, 1049, 1510, 1592
BstMAI GTCTC 2 cut(s) 20, 486
BstMBI GATC 8 cut(s) 423, 438, 774, 828, 861, 1046, 1507, 1589
BstMWI GCNNNNNNNGC 5 cut(s) 188, 509, 953, 1078, 1457
BstNSI RCATGY 3 cut(s) 259, 616, 896
BstSFI CTRYAG 4 cut(s) 690, 1386, 1455, 1585
BstV1I GCAGC 6 cut(s) 148, 841, 965, 1045, 1316, 1469
BstX2I RGATCY 4 cut(s) 423, 438, 774, 1046
BstYI RGATCY 4 cut(s) 423, 438, 774, 1046
BstZ17I GTATAC 1 cut(s) 1145
BsuI GTATCC 1 cut(s) 148
BsuRI GGCC 1 cut(s) 451
BtgI CCRYGG 1 cut(s) 1523
BtsCI GGATG 2 cut(s) 738, 1533
BtsI GCAGTG 1 cut(s) 409
BtsIMutI CAGTG 4 cut(s) 409, 584, 640, 1473
BveI ACCTGC 2 cut(s) 683, 859
Cac8I GCNNGC 1 cut(s) 1449
CaiI CAGNNNCTG 2 cut(s) 337, 605
CciI TCATGA 2 cut(s) 118, 1592
CfoI GCGC 4 cut(s) 182, 660, 966, 1557
Cfr10I RCCGGY 1 cut(s) 1300
Cfr13I GGNCC 1 cut(s) 79
Csp6I GTAC 2 cut(s) 445, 557
CviQI GTAC 2 cut(s) 445, 557
DdeI CTNAG 4 cut(s) 435, 936, 1316, 1416
DinI GGCGCC 2 cut(s) 965, 1556
DpnI GATC 8 cut(s) 425, 440, 776, 830, 863, 1048, 1509, 1591
DpnII GATC 8 cut(s) 423, 438, 774, 828, 861, 1046, 1507, 1589
DrdI GACNNNNNNGTC 1 cut(s) 1025
DseDI GACNNNNNNGTC 1 cut(s) 1025
EaeI YGGCCR 1 cut(s) 449
Eam1104I CTCTTC 2 cut(s) 927, 1056
EarI CTCTTC 2 cut(s) 927, 1056
Eco130I CCWWGG 2 cut(s) 262, 1523
Eco31I GGTCTC 1 cut(s) 486
Eco32I GATATC 1 cut(s) 918
Eco47I GGWCC 1 cut(s) 79
Eco57I CTGAAG 2 cut(s) 314, 1356
EcoRI GAATTC 2 cut(s) 70, 1485
EcoRV GATATC 1 cut(s) 918
EcoT14I CCWWGG 2 cut(s) 262, 1523
EcoT22I ATGCAT 1 cut(s) 361
EgeI GGCGCC 2 cut(s) 965, 1556
EheI GGCGCC 2 cut(s) 965, 1556
ErhI CCWWGG 2 cut(s) 262, 1523
FalI AAGNNNNNCTT 2 cut(s) 1213, 1245
FaqI GGGAC 1 cut(s) 671
FauNDI CATATG 2 cut(s) 272, 1462
FbaI TGATCA 1 cut(s) 861
FblI GTMKAC 3 cut(s) 764, 899, 1144
Fnu4HI GCNGC 8 cut(s) 137, 189, 513, 855, 954, 1034, 1305, 1458
FokI GGATG 2 cut(s) 745, 1540
Fsp4HI GCNGC 8 cut(s) 137, 189, 513, 855, 954, 1034, 1305, 1458
FspBI CTAG 1 cut(s) 881
GlaI GCGC 4 cut(s) 181, 659, 965, 1556
GluI GCNGC 8 cut(s) 137, 189, 513, 855, 954, 1034, 1305, 1458
HaeII RGCGCY 3 cut(s) 183, 967, 1558
HaeIII GGCC 1 cut(s) 451
HapII CCGG 1 cut(s) 1301
HhaI GCGC 4 cut(s) 182, 660, 966, 1557
Hin1I GRCGYC 2 cut(s) 964, 1555
Hin6I GCGC 4 cut(s) 180, 658, 964, 1555
HinP1I GCGC 4 cut(s) 180, 658, 964, 1555
HincII GTYRAC 1 cut(s) 843
HindII GTYRAC 1 cut(s) 843
HindIII AAGCTT 1 cut(s) 344
HpaII CCGG 1 cut(s) 1301
HphI GGTGA 1 cut(s) 1290
Hpy166II GTNNAC 7 cut(s) 6, 765, 843, 900, 1059, 1120, 1145
Hpy188I TCNGA 8 cut(s) 15, 351, 364, 438, 939, 1002, 1214, 1269
Hpy188III TCNNGA 6 cut(s) 119, 146, 464, 754, 1381, 1593
Hpy8I GTNNAC 7 cut(s) 6, 765, 843, 900, 1059, 1120, 1145
HpyAV CCTTC 2 cut(s) 1239, 1356
HpyCH4III ACNGT 6 cut(s) 160, 588, 1027, 1387, 1444, 1548
HpyCH4IV ACGT 4 cut(s) 8, 61, 321, 639
HpyCH4V TGCA 9 cut(s) 359, 407, 503, 599, 612, 692, 878, 1457, 1542
HpyF10VI GCNNNNNNNGC 5 cut(s) 188, 509, 953, 1078, 1457
HpyF3I CTNAG 4 cut(s) 435, 936, 1316, 1416
HpySE526I ACGT 4 cut(s) 8, 61, 321, 639
Hsp92I GRCGYC 2 cut(s) 964, 1555
HspAI GCGC 4 cut(s) 180, 658, 964, 1555
KasI GGCGCC 2 cut(s) 963, 1554
Ksp22I TGATCA 1 cut(s) 861
Kzo9I GATC 8 cut(s) 423, 438, 774, 828, 861, 1046, 1507, 1589
LmnI GCTCC 1 cut(s) 41
Lsp1109I GCAGC 6 cut(s) 148, 841, 965, 1045, 1316, 1469
LweI GCATC 2 cut(s) 200, 368
MaeI CTAG 1 cut(s) 881
MaeII ACGT 4 cut(s) 8, 61, 321, 639
MaeIII GTNAC 4 cut(s) 635, 640, 883, 1156
MalI GATC 8 cut(s) 425, 440, 776, 830, 863, 1048, 1509, 1591
MboI GATC 8 cut(s) 423, 438, 774, 828, 861, 1046, 1507, 1589
MboII GAAGA 8 cut(s) 320, 452, 914, 1043, 1096, 1233, 1358, 1494
MfeI CAATTG 1 cut(s) 1497
MflI RGATCY 4 cut(s) 423, 438, 774, 1046
MhlI GDGCHC 1 cut(s) 46
MlsI TGGCCA 1 cut(s) 451
MluNI TGGCCA 1 cut(s) 451
Mly113I GGCGCC 2 cut(s) 964, 1555
MlyI GAGTC 5 cut(s) 22, 359, 693, 1273, 1577
MmeI TCCRAC 1 cut(s) 1024
MnlI CCTC 7 cut(s) 193, 414, 471, 803, 1279, 1416, 1568
Mox20I TGGCCA 1 cut(s) 451
Mph1103I ATGCAT 1 cut(s) 361
MscI TGGCCA 1 cut(s) 451
MseI TTAA 7 cut(s) 174, 243, 522, 699, 704, 1136, 1341
MslI CAYNNNNRTG 1 cut(s) 1522
Msp20I TGGCCA 1 cut(s) 451
MspA1I CMGCKG 2 cut(s) 191, 1066
MspI CCGG 1 cut(s) 1301
MunI CAATTG 1 cut(s) 1497
Mva1269I GAATGC 1 cut(s) 526
MwoI GCNNNNNNNGC 5 cut(s) 188, 509, 953, 1078, 1457
NarI GGCGCC 2 cut(s) 964, 1555
NcoI CCATGG 1 cut(s) 1523
NdeI CATATG 2 cut(s) 272, 1462
NdeII GATC 8 cut(s) 423, 438, 774, 828, 861, 1046, 1507, 1589
NlaIV GGNNCC 4 cut(s) 220, 425, 965, 1556
NmuCI GTSAC 2 cut(s) 635, 1156
NsiI ATGCAT 1 cut(s) 361
NspI RCATGY 3 cut(s) 259, 616, 896
NspV TTCGAA 1 cut(s) 204
PagI TCATGA 2 cut(s) 118, 1592
PciI ACATGT 2 cut(s) 255, 892
PctI GAATGC 1 cut(s) 526
PfeI GAWTC 6 cut(s) 602, 988, 1224, 1277, 1295, 1573
PkrI GCNGC 8 cut(s) 138, 190, 514, 856, 955, 1035, 1306, 1459
PleI GAGTC 5 cut(s) 22, 359, 692, 1272, 1576
PluTI GGCGCC 2 cut(s) 967, 1558
PpsI GAGTC 5 cut(s) 22, 359, 692, 1272, 1576
Ppu21I YACGTR 1 cut(s) 9
PscI ACATGT 2 cut(s) 255, 892
PshBI ATTAAT 1 cut(s) 174
PspN4I GGNNCC 4 cut(s) 220, 425, 965, 1556
PspPI GGNCC 1 cut(s) 79
PstI CTGCAG 2 cut(s) 694, 1459
PstNI CAGNNNCTG 2 cut(s) 337, 605
PsuI RGATCY 4 cut(s) 423, 438, 774, 1046
RsaI GTAC 2 cut(s) 446, 558
RsaNI GTAC 2 cut(s) 445, 557
RseI CAYNNNNRTG 1 cut(s) 1522
SaqAI TTAA 7 cut(s) 174, 243, 522, 699, 704, 1136, 1341
SatI GCNGC 8 cut(s) 137, 189, 513, 855, 954, 1034, 1305, 1458
Sau3AI GATC 8 cut(s) 423, 438, 774, 828, 861, 1046, 1507, 1589
Sau96I GGNCC 1 cut(s) 79
SbfI CCTGCAGG 1 cut(s) 694
SchI GAGTC 5 cut(s) 22, 359, 693, 1273, 1577
SdaI CCTGCAGG 1 cut(s) 694
SduI GDGCHC 1 cut(s) 46
SfaNI GCATC 2 cut(s) 200, 368
SfcI CTRYAG 4 cut(s) 690, 1386, 1455, 1585
SfoI GGCGCC 2 cut(s) 965, 1556
SfuI TTCGAA 1 cut(s) 204
SinI GGWCC 1 cut(s) 79
SmiMI CAYNNNNRTG 1 cut(s) 1522
SpeI ACTAGT 1 cut(s) 880
Sse8387I CCTGCAGG 1 cut(s) 694
SsiI CCGC 3 cut(s) 189, 513, 1064
SspDI GGCGCC 2 cut(s) 963, 1554
SspMI CTAG 1 cut(s) 881
StyI CCWWGG 2 cut(s) 262, 1523
TaaI ACNGT 6 cut(s) 160, 588, 1027, 1387, 1444, 1548
TaiI ACGT 4 cut(s) 11, 64, 324, 642
TaqI TCGA 3 cut(s) 204, 979, 1571
TatI WGTACW 2 cut(s) 444, 556
TauI GCSGC 2 cut(s) 191, 515
TfiI GAWTC 6 cut(s) 602, 988, 1224, 1277, 1295, 1573
Tru1I TTAA 7 cut(s) 174, 243, 522, 699, 704, 1136, 1341
Tru9I TTAA 7 cut(s) 174, 243, 522, 699, 704, 1136, 1341
TscAI CASTG 4 cut(s) 409, 591, 640, 1480
TseFI GTSAC 2 cut(s) 635, 1156
TseI GCWGC 6 cut(s) 136, 854, 953, 1033, 1304, 1457
Tsp45I GTSAC 2 cut(s) 635, 1156
TspDTI ATGAA 6 cut(s) 107, 135, 259, 663, 1163, 1358
TspGWI ACGGA 4 cut(s) 416, 725, 1156, 1527
TspRI CASTG 4 cut(s) 409, 591, 640, 1480
VpaK11BI GGWCC 1 cut(s) 79
VspI ATTAAT 1 cut(s) 174
XapI RAATTY 3 cut(s) 70, 626, 1485
XceI RCATGY 3 cut(s) 259, 616, 896
XcmI CCANNNNNNNNNTGG 1 cut(s) 1521
XmiI GTMKAC 3 cut(s) 764, 899, 1144
XspI CTAG 1 cut(s) 881
Zsp2I ATGCAT 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.